No.
Definition
Score (bits)
E Value
1 dbj|AK071147.1| Oryza sativa (japonica cultivar-group) cDNA clon...
280
5e-72
2 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
155
2e-34
3 gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...
155
2e-34
4 emb|AL844876.4|CNS08CAZ Oryza sativa chromosome 12, . BAC OSJNBa...
155
2e-34
5 emb|AL713938.2|CNS07YPK Oryza sativa chromosome 12, . BAC OJ1372...
155
2e-34
6 emb|AL713910.2|CNS07YQB Oryza sativa chromosome 12, . BAC OSJNBa...
107
4e-20
7 emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G...
107
4e-20
8 gb|AY104345.1| Zea mays PCO090029 mRNA sequence
68
4e-08
9 ref|XM_783255.1| PREDICTED: Strongylocentrotus purpuratus simila...
42
2.2
10 gb|AF248863.1|AF248863 Strongylocentrotus purpuratus myosin V, c...
42
2.2
11 ref|NM_214490.1| Strongylocentrotus purpuratus myosin V (LOC3732...
42
2.2
12 gb|AC145927.3| Gallus gallus BAC clone CH261-29M22 from chromoso...
42
2.2
13 gb|AC139037.10| Mus musculus chromosome 5, clone RP23-310J14, co...
40
8.6
14 gb|AC161571.11| Mus musculus chromosome 7, clone RP23-403M22, co...
40
8.6
15 gb|AC132134.2| Mus musculus BAC clone RP23-267P6 from chromosome...
40
8.6
16 gb|AC007607.6| Homo sapiens chromosome 16 clone RP11-369H7, comp...
40
8.6
17 emb|AL031769.1|HS194O8 Human DNA sequence from clone RP1-194O8 o...
40
8.6
18 dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...
40
8.6
19 dbj|AP005603.3| Oryza sativa (japonica cultivar-group) genomic D...
40
8.6
20 gb|AF113301.1|AF113301 Conus planorbis calmodulin gene, partial cds
40
8.6
21 gb|AF113266.1|AF113266 Conus connectens calmodulin gene, partial...
40
8.6
22 gb|AC099692.4| Mus musculus chromosome 13, clone RP23-198N22, co...
40
8.6
23 gb|AC141892.4| Mus musculus BAC clone RP23-388J12 from 13, compl...
40
8.6
>dbj|AP008218.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 155 bits (78), Expect = 2e-34
Identities = 135/154 (87%)
Strand = Plus / Plus
Query: 400 cacctggggaccaaaatctcgtgattgaatattctgtcagagattggaggaatatggtct 459
|||||||||| | | ||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 15172322 cacctggggatcgagatctcgtgattgaatatcctatcggagattggaggaatatggtct 15172381
Query: 460 tttttctcattggcatagttaatgatctggaacaggacttcttggatcagcaagctcagc 519
|||||||||||||| |||| ||||||||||| |||||||| ||||||||||| | ||||
Sbjct: 15172382 tttttctcattggcgaagttgatgatctggaaaaggacttcctggatcagcaaccccagc 15172441
Query: 520 gcatcacgtcttgagctggtctcttccaatgctt 553
||| |||| | ||||||| ||||||||| ||||
Sbjct: 15172442 gcagcacgcttggagctggcctcttccaacgctt 15172475
Score = 107 bits (54), Expect = 4e-20
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 415 atctcgtgattgaatattctgtcagagattggaggaatatggtcttttttctcattggca 474
||||| |||||||||||||| |||| |||||||||||||||||| |||||||||||||||
Sbjct: 13719663 atctcatgattgaatattctatcagggattggaggaatatggtcctttttctcattggca 13719604
Query: 475 tagttaatgatctggaacaggacttc 500
|||| ||||||||||| || |||||
Sbjct: 13719603 aagtttatgatctggaatagtacttc 13719578
Score = 105 bits (53), Expect = 2e-19
Identities = 68/72 (94%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 335 acgtcggcattccacccgaatacagaatcagaagagctgtgaacacacgtccaaggaaaa 394
|||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 15172144 acgtcggcgttccacccgaatacagaatcagaagagctgtca--acacgtccaaggaaaa 15172201
Query: 395 ggtgtcacctgg 406
||||||||||||
Sbjct: 15172202 ggtgtcacctgg 15172213
Score = 58.0 bits (29), Expect = 4e-05
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 574 gctttggagccacgtgatttgccttgtcctttaagggttgngacatgcaaattgat 629
|||||||||| ||||||||| || ||||||||| || || |||||||||||||||
Sbjct: 15172592 gctttggagctacgtgattttccatgtcctttagggcttatgacatgcaaattgat 15172647
Score = 54.0 bits (27), Expect = 6e-04
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 379 acacgtccaaggaaaaggtgtcacctgggga 409
|||||||||||||||| ||||||||||||||
Sbjct: 13719783 acacgtccaaggaaaacgtgtcacctgggga 13719753
Score = 46.1 bits (23), Expect = 0.14
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 524 cacgtcttgagctggtctcttccaatgcttg 554
||||||||||||| ||||||||||||||||
Sbjct: 13719554 cacgtcttgagctactctcttccaatgcttg 13719524
>gb|DP000011.1 | Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 155 bits (78), Expect = 2e-34
Identities = 135/154 (87%)
Strand = Plus / Plus
Query: 400 cacctggggaccaaaatctcgtgattgaatattctgtcagagattggaggaatatggtct 459
|||||||||| | | ||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 15126605 cacctggggatcgagatctcgtgattgaatatcctatcggagattggaggaatatggtct 15126664
Query: 460 tttttctcattggcatagttaatgatctggaacaggacttcttggatcagcaagctcagc 519
|||||||||||||| |||| ||||||||||| |||||||| ||||||||||| | ||||
Sbjct: 15126665 tttttctcattggcgaagttgatgatctggaaaaggacttcctggatcagcaaccccagc 15126724
Query: 520 gcatcacgtcttgagctggtctcttccaatgctt 553
||| |||| | ||||||| ||||||||| ||||
Sbjct: 15126725 gcagcacgcttggagctggcctcttccaacgctt 15126758
Score = 107 bits (54), Expect = 4e-20
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 415 atctcgtgattgaatattctgtcagagattggaggaatatggtcttttttctcattggca 474
||||| |||||||||||||| |||| |||||||||||||||||| |||||||||||||||
Sbjct: 13673937 atctcatgattgaatattctatcagggattggaggaatatggtcctttttctcattggca 13673878
Query: 475 tagttaatgatctggaacaggacttc 500
|||| ||||||||||| || |||||
Sbjct: 13673877 aagtttatgatctggaatagtacttc 13673852
Score = 105 bits (53), Expect = 2e-19
Identities = 68/72 (94%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 335 acgtcggcattccacccgaatacagaatcagaagagctgtgaacacacgtccaaggaaaa 394
|||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 15126427 acgtcggcgttccacccgaatacagaatcagaagagctgtca--acacgtccaaggaaaa 15126484
Query: 395 ggtgtcacctgg 406
||||||||||||
Sbjct: 15126485 ggtgtcacctgg 15126496
Score = 58.0 bits (29), Expect = 4e-05
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 574 gctttggagccacgtgatttgccttgtcctttaagggttgngacatgcaaattgat 629
|||||||||| ||||||||| || ||||||||| || || |||||||||||||||
Sbjct: 15126875 gctttggagctacgtgattttccatgtcctttagggcttatgacatgcaaattgat 15126930
Score = 54.0 bits (27), Expect = 6e-04
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 379 acacgtccaaggaaaaggtgtcacctgggga 409
|||||||||||||||| ||||||||||||||
Sbjct: 13674057 acacgtccaaggaaaacgtgtcacctgggga 13674027
Score = 46.1 bits (23), Expect = 0.14
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 524 cacgtcttgagctggtctcttccaatgcttg 554
||||||||||||| ||||||||||||||||
Sbjct: 13673828 cacgtcttgagctactctcttccaatgcttg 13673798
>emb|AL844876.4 |CNS08CAZ Oryza sativa chromosome 12, . BAC OSJNBa0063F10 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 153687
Score = 155 bits (78), Expect = 2e-34
Identities = 135/154 (87%)
Strand = Plus / Minus
Query: 400 cacctggggaccaaaatctcgtgattgaatattctgtcagagattggaggaatatggtct 459
|||||||||| | | ||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 83596 cacctggggatcgagatctcgtgattgaatatcctatcggagattggaggaatatggtct 83537
Query: 460 tttttctcattggcatagttaatgatctggaacaggacttcttggatcagcaagctcagc 519
|||||||||||||| |||| ||||||||||| |||||||| ||||||||||| | ||||
Sbjct: 83536 tttttctcattggcgaagttgatgatctggaaaaggacttcctggatcagcaaccccagc 83477
Query: 520 gcatcacgtcttgagctggtctcttccaatgctt 553
||| |||| | ||||||| ||||||||| ||||
Sbjct: 83476 gcagcacgcttggagctggcctcttccaacgctt 83443
Score = 105 bits (53), Expect = 2e-19
Identities = 68/72 (94%), Gaps = 2/72 (2%)
Strand = Plus / Minus
Query: 335 acgtcggcattccacccgaatacagaatcagaagagctgtgaacacacgtccaaggaaaa 394
|||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 83774 acgtcggcgttccacccgaatacagaatcagaagagctgtca--acacgtccaaggaaaa 83717
Query: 395 ggtgtcacctgg 406
||||||||||||
Sbjct: 83716 ggtgtcacctgg 83705
Score = 58.0 bits (29), Expect = 4e-05
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 574 gctttggagccacgtgatttgccttgtcctttaagggttgngacatgcaaattgat 629
|||||||||| ||||||||| || ||||||||| || || |||||||||||||||
Sbjct: 83326 gctttggagctacgtgattttccatgtcctttagggcttatgacatgcaaattgat 83271
>emb|AL713938.2 |CNS07YPK Oryza sativa chromosome 12, . BAC OJ1372_C12 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 113071
Score = 155 bits (78), Expect = 2e-34
Identities = 135/154 (87%)
Strand = Plus / Plus
Query: 400 cacctggggaccaaaatctcgtgattgaatattctgtcagagattggaggaatatggtct 459
|||||||||| | | ||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 111739 cacctggggatcgagatctcgtgattgaatatcctatcggagattggaggaatatggtct 111798
Query: 460 tttttctcattggcatagttaatgatctggaacaggacttcttggatcagcaagctcagc 519
|||||||||||||| |||| ||||||||||| |||||||| ||||||||||| | ||||
Sbjct: 111799 tttttctcattggcgaagttgatgatctggaaaaggacttcctggatcagcaaccccagc 111858
Query: 520 gcatcacgtcttgagctggtctcttccaatgctt 553
||| |||| | ||||||| ||||||||| ||||
Sbjct: 111859 gcagcacgcttggagctggcctcttccaacgctt 111892
Score = 105 bits (53), Expect = 2e-19
Identities = 68/72 (94%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 335 acgtcggcattccacccgaatacagaatcagaagagctgtgaacacacgtccaaggaaaa 394
|||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 111561 acgtcggcgttccacccgaatacagaatcagaagagctgtca--acacgtccaaggaaaa 111618
Query: 395 ggtgtcacctgg 406
||||||||||||
Sbjct: 111619 ggtgtcacctgg 111630
Score = 58.0 bits (29), Expect = 4e-05
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 574 gctttggagccacgtgatttgccttgtcctttaagggttgngacatgcaaattgat 629
|||||||||| ||||||||| || ||||||||| || || |||||||||||||||
Sbjct: 112009 gctttggagctacgtgattttccatgtcctttagggcttatgacatgcaaattgat 112064
>gb|AC141892.4 | Mus musculus BAC clone RP23-388J12 from 13, complete sequence
Length = 219862
Score = 40.1 bits (20), Expect = 8.6
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 39 cagattgtcaaagagaaatattta 62
|||||||| |||||||||||||||
Sbjct: 177382 cagattgtaaaagagaaatattta 177359
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,578,551
Number of Sequences: 3902068
Number of extensions: 5578551
Number of successful extensions: 97060
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96885
Number of HSP's gapped (non-prelim): 169
length of query: 629
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 606
effective length of database: 17,143,297,704
effective search space: 10388838408624
effective search space used: 10388838408624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)