ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21g24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191995.1| Oryza sativa (japonica cultivar-group), predic... 206 4e-50
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
3dbj|AP003374.3| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
4dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
5ref|NM_114509.1| Arabidopsis thaliana ATP binding / kinase/ prot... 52 0.002
6emb|AL133298.1|ATF18L15 Arabidopsis thaliana DNA chromosome 3, B... 52 0.002
7emb|CT009540.10| M.truncatula DNA sequence from clone MTH2-39B3 ... 44 0.37
8emb|CR700492.2|CNS0G3G8 Tetraodon nigroviridis full-length cDNA 42 1.5
9emb|CR677509.2|CNS0FLQ9 Tetraodon nigroviridis full-length cDNA 42 1.5
10emb|CR671323.2|CNS0FGYP Tetraodon nigroviridis full-length cDNA 42 1.5
11emb|CR666186.2|CNS0FD00 Tetraodon nigroviridis full-length cDNA 42 1.5
12emb|AL512490.13| Human DNA sequence from clone RP11-522A1 on chr... 42 1.5
13ref|NM_146493.1| Mus musculus olfactory receptor 730 (Olfr730), ... 40 5.8
14gb|AY317855.1| Mus musculus olfactory receptor Olfr730 (Olfr730)... 40 5.8
15gb|AC140463.2| Mus musculus BAC clone RP24-348D8 from chromosome... 40 5.8
16ref|NM_001000093.1| Rattus norvegicus olfactory receptor 1608 (p... 40 5.8
17gb|AY073604.1| Mus musculus olfactory receptor MOR247-1 gene, co... 40 5.8
18gb|AC087633.5| Homo sapiens chromosome 15, clone RP11-255M2, com... 40 5.8
19gb|AF148597.1|AF148597 Oryza granulata alcohol dehydrogenase I (... 40 5.8
20gb|AF148596.1|AF148596 Oryza meyeriana alcohol dehydrogenase I (... 40 5.8
21emb|AL831757.5| Mouse DNA sequence from clone RP23-279A21 on chr... 40 5.8 
>ref|NM_191995.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2007

 Score =  206 bits (104), Expect = 4e-50
 Identities = 251/300 (83%)
 Strand = Plus / Minus

                                                                       
Query: 33  atcatagatgtcgaaatcagtttcctgatcaaagttaccatgggaattttggaccacggg 92
           |||||||| ||| |||||| ||||||||||||| || |  | |||||||||||  |  ||
Sbjct: 597 atcatagacgtcaaaatcaatttcctgatcaaaattcctgtaggaattttggatgagagg 538

                                                                       
Query: 93  ccattgaaatctgttgttcgaaagcaataaattcttaagtgatgccatttctgctatctt 152
           |||||||||  | ||||| |||||||| || | ||||| ||||  |||||||||||||| 
Sbjct: 537 ccattgaaagttattgttggaaagcaacaagtgcttaattgattgcatttctgctatctc 478

                                                                       
Query: 153 ctgtggaacttccccagtcaagttgttattgcttaggtccaatatctccaacgttgcaag 212
           ||| |||||||| |||||||| |||||||||||||  |||| ||| |||| | |||||||
Sbjct: 477 ctgcggaacttcaccagtcaaattgttattgcttaaatccagtatttccagcattgcaag 418

                                                                       
Query: 213 accaccaatttccttaggtatcagtccactaaacaagttgttggataatacaagagcctg 272
           | |||  |||||||| |||||  |||||   |||||||||||||| | ||||||||||  
Sbjct: 417 atcactcatttccttcggtattggtccatcgaacaagttgttggagagtacaagagccct 358

                                                                       
Query: 273 cagatgactaagacttcctagttctggacccaggttacctcttaatgagagatcttttag 332
           |||||||||||||||||||||||||||||||| | ||||||||| ||||||||| |||||
Sbjct: 357 cagatgactaagacttcctagttctggacccaaggtacctcttagtgagagatcctttag 298



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                       
Query: 340 atcacaaccctgtcatcggcgcagcggactccgttccaaccgcaggggtcggcgtccagc 399
           ||||| |||||| ||||  |||||||||| |||||||||| ||| || ||| | ||| ||
Sbjct: 227 atcaccaccctgccatccacgcagcggacgccgttccaactgcaaggatcgccatcccgc 168

                                           
Query: 400 acgctccagcctgccatggcgccatgcggatc 431
            ||||||| |||||||||||||||||||||||
Sbjct: 167 tcgctccaacctgccatggcgccatgcggatc 136
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 101/120 (84%)
 Strand = Plus / Minus

                                                                            
Query: 138      catttctgctatcttctgtggaacttccccagtcaagttgttattgcttaggtccaatat 197
                |||||||||||||| ||| |||||||| |||||||| |||||||||||||  |||| |||
Sbjct: 27729766 catttctgctatctcctgcggaacttcaccagtcaaattgttattgcttaaatccagtat 27729707

                                                                            
Query: 198      ctccaacgttgcaagaccaccaatttccttaggtatcagtccactaaacaagttgttgga 257
                 |||| | |||||||| |||  |||||||| |||||  |||||   ||||||||||||||
Sbjct: 27729706 ttccagcattgcaagatcactcatttccttcggtattggtccatcgaacaagttgttgga 27729647



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                            
Query: 273      cagatgactaagacttcctagttctggacccaggttacctcttaatgagagatcttttag 332
                |||||||||||||||||||||||||||||||| | ||||||||| ||||||||| |||||
Sbjct: 27729132 cagatgactaagacttcctagttctggacccaaggtacctcttagtgagagatcctttag 27729073



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                            
Query: 340      atcacaaccctgtcatcggcgcagcggactccgttccaaccgcaggggtcggcgtccagc 399
                ||||| |||||| ||||  |||||||||| |||||||||| ||| || ||| | ||| ||
Sbjct: 27727444 atcaccaccctgccatccacgcagcggacgccgttccaactgcaaggatcgccatcccgc 27727385

                                                
Query: 400      acgctccagcctgccatggcgccatgcggatc 431
                 ||||||| |||||||||||||||||||||||
Sbjct: 27727384 tcgctccaacctgccatggcgccatgcggatc 27727353



 Score = 46.1 bits (23), Expect = 0.094
 Identities = 71/87 (81%)
 Strand = Plus / Minus

                                                                            
Query: 33       atcatagatgtcgaaatcagtttcctgatcaaagttaccatgggaattttggaccacggg 92
                |||||||| ||| |||||| ||||||||||||| || |  | |||||||||||  |  ||
Sbjct: 27729955 atcatagacgtcaaaatcaatttcctgatcaaaattcctgtaggaattttggatgagagg 27729896

                                           
Query: 93       ccattgaaatctgttgttcgaaagcaa 119
                |||||||||  | ||||| ||||||||
Sbjct: 27729895 ccattgaaagttattgttggaaagcaa 27729869
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>dbj|AP003374.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1117_G01
          Length = 125454

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 101/120 (84%)
 Strand = Plus / Minus

                                                                         
Query: 138   catttctgctatcttctgtggaacttccccagtcaagttgttattgcttaggtccaatat 197
             |||||||||||||| ||| |||||||| |||||||| |||||||||||||  |||| |||
Sbjct: 21821 catttctgctatctcctgcggaacttcaccagtcaaattgttattgcttaaatccagtat 21762

                                                                         
Query: 198   ctccaacgttgcaagaccaccaatttccttaggtatcagtccactaaacaagttgttgga 257
              |||| | |||||||| |||  |||||||| |||||  |||||   ||||||||||||||
Sbjct: 21761 ttccagcattgcaagatcactcatttccttcggtattggtccatcgaacaagttgttgga 21702



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                         
Query: 273   cagatgactaagacttcctagttctggacccaggttacctcttaatgagagatcttttag 332
             |||||||||||||||||||||||||||||||| | ||||||||| ||||||||| |||||
Sbjct: 21187 cagatgactaagacttcctagttctggacccaaggtacctcttagtgagagatcctttag 21128



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                         
Query: 340   atcacaaccctgtcatcggcgcagcggactccgttccaaccgcaggggtcggcgtccagc 399
             ||||| |||||| ||||  |||||||||| |||||||||| ||| || ||| | ||| ||
Sbjct: 19499 atcaccaccctgccatccacgcagcggacgccgttccaactgcaaggatcgccatcccgc 19440

                                             
Query: 400   acgctccagcctgccatggcgccatgcggatc 431
              ||||||| |||||||||||||||||||||||
Sbjct: 19439 tcgctccaacctgccatggcgccatgcggatc 19408



 Score = 46.1 bits (23), Expect = 0.094
 Identities = 71/87 (81%)
 Strand = Plus / Minus

                                                                         
Query: 33    atcatagatgtcgaaatcagtttcctgatcaaagttaccatgggaattttggaccacggg 92
             |||||||| ||| |||||| ||||||||||||| || |  | |||||||||||  |  ||
Sbjct: 22010 atcatagacgtcaaaatcaatttcctgatcaaaattcctgtaggaattttggatgagagg 21951

                                        
Query: 93    ccattgaaatctgttgttcgaaagcaa 119
             |||||||||  | ||||| ||||||||
Sbjct: 21950 ccattgaaagttattgttggaaagcaa 21924
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>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0485G01
          Length = 167203

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 101/120 (84%)
 Strand = Plus / Minus

                                                                          
Query: 138    catttctgctatcttctgtggaacttccccagtcaagttgttattgcttaggtccaatat 197
              |||||||||||||| ||| |||||||| |||||||| |||||||||||||  |||| |||
Sbjct: 138332 catttctgctatctcctgcggaacttcaccagtcaaattgttattgcttaaatccagtat 138273

                                                                          
Query: 198    ctccaacgttgcaagaccaccaatttccttaggtatcagtccactaaacaagttgttgga 257
               |||| | |||||||| |||  |||||||| |||||  |||||   ||||||||||||||
Sbjct: 138272 ttccagcattgcaagatcactcatttccttcggtattggtccatcgaacaagttgttgga 138213



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                          
Query: 273    cagatgactaagacttcctagttctggacccaggttacctcttaatgagagatcttttag 332
              |||||||||||||||||||||||||||||||| | ||||||||| ||||||||| |||||
Sbjct: 137698 cagatgactaagacttcctagttctggacccaaggtacctcttagtgagagatcctttag 137639



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 79/92 (85%)
 Strand = Plus / Minus

                                                                          
Query: 340    atcacaaccctgtcatcggcgcagcggactccgttccaaccgcaggggtcggcgtccagc 399
              ||||| |||||| ||||  |||||||||| |||||||||| ||| || ||| | ||| ||
Sbjct: 136010 atcaccaccctgccatccacgcagcggacgccgttccaactgcaaggatcgccatcccgc 135951

                                              
Query: 400    acgctccagcctgccatggcgccatgcggatc 431
               ||||||| |||||||||||||||||||||||
Sbjct: 135950 tcgctccaacctgccatggcgccatgcggatc 135919



 Score = 46.1 bits (23), Expect = 0.094
 Identities = 71/87 (81%)
 Strand = Plus / Minus

                                                                          
Query: 33     atcatagatgtcgaaatcagtttcctgatcaaagttaccatgggaattttggaccacggg 92
              |||||||| ||| |||||| ||||||||||||| || |  | |||||||||||  |  ||
Sbjct: 138521 atcatagacgtcaaaatcaatttcctgatcaaaattcctgtaggaattttggatgagagg 138462

                                         
Query: 93     ccattgaaatctgttgttcgaaagcaa 119
              |||||||||  | ||||| ||||||||
Sbjct: 138461 ccattgaaagttattgttggaaagcaa 138435
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>ref|NM_114509.1| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein
            serine/threonine kinase/ protein-tyrosine kinase
            AT3G46420 mRNA, complete cds
          Length = 2517

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 157  ggaacttccccagtcaagttgttatt 182
            ||||||||||||||||||||||||||
Sbjct: 1352 ggaacttccccagtcaagttgttatt 1327
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>emb|AL133298.1|ATF18L15 Arabidopsis thaliana DNA chromosome 3, BAC clone F18L15
          Length = 100328

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 157   ggaacttccccagtcaagttgttatt 182
             ||||||||||||||||||||||||||
Sbjct: 70598 ggaacttccccagtcaagttgttatt 70573
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>emb|CT009540.10| M.truncatula DNA sequence from clone MTH2-39B3 on chromosome 3,
             complete sequence
          Length = 127327

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 156   tggaacttccccagtcaagttgttat 181
             ||||| ||||||||||||||||||||
Sbjct: 39451 tggaagttccccagtcaagttgttat 39476
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>emb|CR700492.2|CNS0G3G8 Tetraodon nigroviridis full-length cDNA
          Length = 403

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 229 ggtatcagtccactaaacaag 249
           |||||||||||||||||||||
Sbjct: 368 ggtatcagtccactaaacaag 348
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>emb|CR677509.2|CNS0FLQ9 Tetraodon nigroviridis full-length cDNA
          Length = 623

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 229 ggtatcagtccactaaacaag 249
           |||||||||||||||||||||
Sbjct: 588 ggtatcagtccactaaacaag 568
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>emb|CR671323.2|CNS0FGYP Tetraodon nigroviridis full-length cDNA
          Length = 623

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 229 ggtatcagtccactaaacaag 249
           |||||||||||||||||||||
Sbjct: 588 ggtatcagtccactaaacaag 568
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>emb|CR666186.2|CNS0FD00 Tetraodon nigroviridis full-length cDNA
          Length = 623

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 229 ggtatcagtccactaaacaag 249
           |||||||||||||||||||||
Sbjct: 588 ggtatcagtccactaaacaag 568
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>emb|AL512490.13| Human DNA sequence from clone RP11-522A1 on chromosome 6 Contains the
             5' end of a novel gene (FLJ00197) and a CpG island,
             complete sequence
          Length = 60269

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 113   aaagcaataaattcttaagtg 133
             |||||||||||||||||||||
Sbjct: 13671 aaagcaataaattcttaagtg 13651
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>ref|NM_146493.1| Mus musculus olfactory receptor 730 (Olfr730), mRNA
          Length = 957

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 22  ctcccaagatgatcatagat 41
           ||||||||||||||||||||
Sbjct: 236 ctcccaagatgatcatagat 255
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>gb|AY317855.1| Mus musculus olfactory receptor Olfr730 (Olfr730) gene, complete
           cds
          Length = 954

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 22  ctcccaagatgatcatagat 41
           ||||||||||||||||||||
Sbjct: 233 ctcccaagatgatcatagat 252
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>gb|AC140463.2| Mus musculus BAC clone RP24-348D8 from chromosome 14, complete sequence
          Length = 159158

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    ctcccaagatgatcatagat 41
             ||||||||||||||||||||
Sbjct: 66993 ctcccaagatgatcatagat 66974
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>ref|NM_001000093.1| Rattus norvegicus olfactory receptor 1608 (predicted)
           (Olr1608_predicted), mRNA
          Length = 954

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 22  ctcccaagatgatcatagat 41
           ||||||||||||||||||||
Sbjct: 233 ctcccaagatgatcatagat 252
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>gb|AY073604.1| Mus musculus olfactory receptor MOR247-1 gene, complete cds
          Length = 957

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 22  ctcccaagatgatcatagat 41
           ||||||||||||||||||||
Sbjct: 236 ctcccaagatgatcatagat 255
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>gb|AC087633.5| Homo sapiens chromosome 15, clone RP11-255M2, complete sequence
          Length = 179163

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   aataaattcttaagtgatgc 137
             ||||||||||||||||||||
Sbjct: 49939 aataaattcttaagtgatgc 49920
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>gb|AF148597.1|AF148597 Oryza granulata alcohol dehydrogenase I (Adh1) gene, exons 3 though
            7, partial cds
          Length = 1640

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 201  caacgttgcaagaccaccaa 220
            ||||||||||||||||||||
Sbjct: 1219 caacgttgcaagaccaccaa 1238
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>gb|AF148596.1|AF148596 Oryza meyeriana alcohol dehydrogenase I (Adh1) gene, exons 3 though
            7, partial cds
          Length = 1637

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 201  caacgttgcaagaccaccaa 220
            ||||||||||||||||||||
Sbjct: 1216 caacgttgcaagaccaccaa 1235
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>emb|AL831757.5| Mouse DNA sequence from clone RP23-279A21 on chromosome X, complete
             sequence
          Length = 85948

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    ccaagatgatcatagatgtc 44
             ||||||||||||||||||||
Sbjct: 45500 ccaagatgatcatagatgtc 45519


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,468,263
Number of Sequences: 3902068
Number of extensions: 3468263
Number of successful extensions: 59572
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59521
Number of HSP's gapped (non-prelim): 51
length of query: 431
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 409
effective length of database: 17,147,199,772
effective search space: 7013204706748
effective search space used: 7013204706748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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