ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CML1_RAT (O35786) Chemokine receptor-like 1 (G-protein coupled r... 35 0.11
2ADA20_HUMAN (O43506) ADAM 20 precursor (EC 3.4.24.-) (A disinteg... 31 2.7
3CY1_KLULA (Q00988) Cytochrome c1, heme protein, mitochondrial pr... 29 7.8

>CML1_RAT (O35786) Chemokine receptor-like 1 (G-protein coupled receptor DEZ)|
           (G-protein coupled chemoattractant-like receptor)
          Length = 371

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +1

Query: 313 IWLRQHGSLHRHYHQTWLPFSWLSWQPSPS--SGSQERASGWSACCQSLTLVSPDHLRHS 486
           +W + H S+   Y    + + WLS +  PS   G    + G   C  + +L +P+   HS
Sbjct: 143 VWSQNHRSVRLAYMTCVVVWVWLSSESPPSLVFGHVSTSHGKITCFNNFSLAAPEPFSHS 202

Query: 487 DHPQ 498
            HP+
Sbjct: 203 THPR 206



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>ADA20_HUMAN (O43506) ADAM 20 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 20)
          Length = 726

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 168 NIWKNYEVQNLCEWEMASGFYKNALGGMMPISQYK*ACHN 287
           +IWKNY + N  + ++A  F K+  G  + ++  K  C N
Sbjct: 280 SIWKNYNLNNRLQHDVAHLFIKDTQGMKLGVAYVKGICQN 319



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>CY1_KLULA (Q00988) Cytochrome c1, heme protein, mitochondrial precursor|
          Length = 292

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 323 DSMEAFIVTITKHGCHFHGYLGSHLPPLE 409
           DS+ A  +T  +HG H  GY  SH  PLE
Sbjct: 40  DSLTADAMTAAEHGLHAPGYGWSHNGPLE 68


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,614,478
Number of Sequences: 219361
Number of extensions: 1617771
Number of successful extensions: 3763
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3763
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4488201198
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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