ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21g04 |
|---|---|
| Clone Library Name | barley_pub |
>RPO2J_ARATH (Q38859) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.6 kDa polypeptide) Length = 116 Score = 184 bits (468), Expect = 2e-46 Identities = 88/106 (83%), Positives = 98/106 (92%) Frame = -2 Query: 604 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 425 MNAP+RYERFVVPEGTKKVS+++DTKI+NAASFT+EREDHTIGNI+RMQLHRD NV FAG Sbjct: 1 MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60 Query: 424 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE 287 Y+LPHPL+YKIIVRIHT SQSSP QAY QAINDLDKEL+ LK FE Sbjct: 61 YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFE 106
>RPO2J_HUMAN (P52435) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.3 kDa polypeptide) (RPB11) Length = 117 Score = 125 bits (315), Expect = 9e-29 Identities = 58/107 (54%), Positives = 78/107 (72%) Frame = -2 Query: 604 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 425 MNAP +E F++ EG KK++ KDTK+ NA FTI +EDHT+GNI++ QL +DP V FAG Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60 Query: 424 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFEV 284 YK+PHPL++KII+R+ T SP +A+T AI DL EL L++ F V Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRV 107
>RPO2J_MOUSE (O08740) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.3 kDa polypeptide) (RPB11) (RPB14) Length = 117 Score = 124 bits (311), Expect = 3e-28 Identities = 57/105 (54%), Positives = 77/105 (73%) Frame = -2 Query: 604 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 425 MNAP +E F++ EG KK++ KDTK+ NA FTI +EDHT+GNI++ QL +DP V FAG Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60 Query: 424 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAF 290 YK+PHPL++KII+R+ T SP +A+T AI DL EL L++ F Sbjct: 61 YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105
>RPO2J_DROME (Q9VJE4) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.3 kDa polypeptide) (RPB11) Length = 117 Score = 120 bits (301), Expect = 4e-27 Identities = 56/106 (52%), Positives = 77/106 (72%) Frame = -2 Query: 604 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 425 MNAP +E F++ EG KK+ E DTK+ NAA FTI +EDHT+GN++R QL +DPNV FAG Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAG 60 Query: 424 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE 287 YK+PHPL++K ++RI T + SP +A+ AI DL EL ++ F+ Sbjct: 61 YKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFK 106
>RPO2J_ANOGA (Q7PVQ9) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| Length = 117 Score = 119 bits (298), Expect = 8e-27 Identities = 56/105 (53%), Positives = 76/105 (72%) Frame = -2 Query: 604 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 425 MNAP +E F++ EG KK+ E D K+ NAA FT+ +EDHT+GN++R QL +DPNV FAG Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAG 60 Query: 424 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAF 290 YKLPHPL++K ++RI T S+ SP +A+ AI DL EL ++ F Sbjct: 61 YKLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLSELSLFEERF 105
>RPO2J_CAEBR (Q60SM4) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 122 Score = 110 bits (276), Expect = 3e-24 Identities = 54/106 (50%), Positives = 76/106 (71%) Frame = -2 Query: 604 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 425 MNAP +E F++ + KK+ EKDTK+ NAA FTI +EDHT+GN+L++QL +DP V FAG Sbjct: 1 MNAPAAFESFLLLDD-KKIYIEKDTKVPNAAIFTINKEDHTLGNMLKIQLLKDPEVLFAG 59 Query: 424 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE 287 YK PHPL++KI++R+ T + ++P A T AI DL EL L+ + Sbjct: 60 YKNPHPLEHKILLRVQTTNATTPADALTTAITDLVGELSLLEHRID 105
>RPO2J_CAEEL (Q9XVH6) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 122 Score = 109 bits (272), Expect = 9e-24 Identities = 55/106 (51%), Positives = 75/106 (70%) Frame = -2 Query: 604 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 425 MNAP +E F++ + KK EKDTK+ NAA FTI +EDHT+GN+L++QL +DP V FAG Sbjct: 1 MNAPAAFESFLLLDD-KKFYIEKDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAG 59 Query: 424 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE 287 YK PHPL++KI++RI T + ++P A T AI DL EL L+ + Sbjct: 60 YKNPHPLEHKILLRIQTTNNTTPADALTTAITDLVGELSLLEHRID 105
>RPB11_SCHPO (P87123) DNA-directed RNA polymerase II 14.1 kDa polypeptide (EC| 2.7.7.6) Length = 123 Score = 92.0 bits (227), Expect = 1e-18 Identities = 48/105 (45%), Positives = 62/105 (59%) Frame = -2 Query: 604 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 425 MN P+RYE + G KV++E D+K NAA T+E+EDHT+ N+L QL D V FAG Sbjct: 1 MNQPERYE-LIELMGLPKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAG 59 Query: 424 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAF 290 YK+PHPL + I+R+ T SP Q A L LE +K F Sbjct: 60 YKVPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLITHLEEIKVNF 104
>RPB11_YEAST (P38902) DNA-directed RNA polymerase II 13.6 kDa polypeptide (EC| 2.7.7.6) (B13.6) Length = 120 Score = 91.3 bits (225), Expect = 2e-18 Identities = 46/106 (43%), Positives = 61/106 (57%) Frame = -2 Query: 604 MNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAG 425 MNAPDR+E F++ EG K+ + DTK NA T E+EDHT+GN++R +L D V FA Sbjct: 1 MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAA 60 Query: 424 YKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE 287 YK+ HP + +RI T P A A N + +L LK FE Sbjct: 61 YKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIINKLGALKTNFE 106
>RPO2J_PLACH (Q4XS21) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 126 Score = 64.3 bits (155), Expect = 3e-10 Identities = 34/104 (32%), Positives = 57/104 (54%) Frame = -2 Query: 601 NAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGY 422 N P+ + V+P G +KV + K + FTI+ EDHTIGN+++ L +DP V FA Y Sbjct: 8 NKPENVDLLVLPHGEEKVKCQISDK-GDCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAY 66 Query: 421 KLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAF 290 + PHPLQ I + I + + + ++ + ++ L++ F Sbjct: 67 RQPHPLQNAIEITIRPKGYAG-VKLLSDNVHSILNQVSTLRETF 109
>RPO2J_PLABA (Q4YZZ7) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 126 Score = 63.5 bits (153), Expect = 5e-10 Identities = 34/104 (32%), Positives = 57/104 (54%) Frame = -2 Query: 601 NAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGY 422 N P+ + V+P G +KV + K + FTI+ EDHTIGN+++ L +DP V FA Y Sbjct: 8 NKPENVDLLVLPHGEEKVKCQISDK-GDCNIFTIKLEDHTIGNLIKQSLCQDPKVTFAAY 66 Query: 421 KLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAF 290 + PHPLQ I + I + + + ++ + ++ L++ F Sbjct: 67 RQPHPLQNVIEITIRPKGYAG-VKLLSDNVHTILNQVSTLRETF 109
>RPO2J_PLAF7 (Q8IER7) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 126 Score = 63.2 bits (152), Expect = 7e-10 Identities = 36/104 (34%), Positives = 58/104 (55%) Frame = -2 Query: 601 NAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGY 422 N P+ + V+ G KKV+ K + F I+ EDHTIGN++++QL +DP V FA Y Sbjct: 8 NKPETVDLLVLAPGEKKVTCTISDK-GDCNIFVIKLEDHTIGNLIKIQLCQDPKVLFAAY 66 Query: 421 KLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENLKQAF 290 + PHPLQ I + I + + + +N++ ++ LK+ F Sbjct: 67 RQPHPLQNAIEITIKPKGYAG-VKLLSDNVNNILSQVATLKENF 109
>RPC19_SCHPO (Q09177) DNA-directed RNA polymerases I and III 14 kDa polypeptide| (EC 2.7.7.6) Length = 125 Score = 60.8 bits (146), Expect = 4e-09 Identities = 25/67 (37%), Positives = 42/67 (62%) Frame = -2 Query: 523 MNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAY 344 + + +F I++EDHT+GN LR + ++P V F GY +PHP + K+ RI TA ++ Sbjct: 32 LTSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVL 91 Query: 343 TQAINDL 323 + ++DL Sbjct: 92 RKGLDDL 98
>RPC19_YEAST (P28000) DNA-directed RNA polymerases I and III 16 kDa polypeptide| (EC 2.7.7.6) (AC19) Length = 142 Score = 60.5 bits (145), Expect = 5e-09 Identities = 26/65 (40%), Positives = 41/65 (63%) Frame = -2 Query: 517 AASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQ 338 +ASF I EDHT+GN LR + ++P+V F GY +PHP + + +RI T +++ A + Sbjct: 60 SASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQK 119 Query: 337 AINDL 323 + DL Sbjct: 120 GLKDL 124
>RPO1D_CAEBR (Q61IX2) Probable DNA-directed RNA polymerase I subunit D (EC| 2.7.7.6) Length = 145 Score = 58.9 bits (141), Expect = 1e-08 Identities = 34/128 (26%), Positives = 60/128 (46%) Frame = -2 Query: 661 PRSAPRGISEEGGAKC*SEMNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHT 482 P P + EE ++N P + + ++ SFE+D + + + EDHT Sbjct: 20 PAVEPEAVPEEEPEVEDEDLNVPKKKKMEILDPK----SFEQDPSNL---TLILYEEDHT 72 Query: 481 IGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENL 302 IGN ++ L R V F GY +PHPL+ KI+ R+ T + + +A +++ + Sbjct: 73 IGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALEVLVKAFESVEQVFSTI 132 Query: 301 KQAFEVCF 278 + FE + Sbjct: 133 RGKFEAAY 140
>RPO1D_HUMAN (Q9Y2S0) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)| (DNA-directed RNA polymerase I 16 kDa polypeptide) (RPA16) Length = 133 Score = 57.4 bits (137), Expect = 4e-08 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 3/96 (3%) Frame = -2 Query: 565 EGTKKVSFEKDTKI---MNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYK 395 EG +K + E + +F + EDHT+GN LR + ++P V F GY HP + K Sbjct: 20 EGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESK 79 Query: 394 IIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE 287 I +RI T + + + +N+L +++ FE Sbjct: 80 INLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFE 115
>RPO1D_XENLA (Q5XK67) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)| Length = 114 Score = 57.4 bits (137), Expect = 4e-08 Identities = 25/78 (32%), Positives = 43/78 (55%) Frame = -2 Query: 520 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 341 + +F + EDHT+GN LR + ++P V F GY + HP + KI RI T + + + Sbjct: 22 SCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQTRNGIPAVEPFR 81 Query: 340 QAINDLDKELENLKQAFE 287 + +N+L +++ FE Sbjct: 82 RGLNELVDVCQHVLNTFE 99
>RPOL_SULTO (Q96YA7) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 93 Score = 56.2 bits (134), Expect = 9e-08 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 4/78 (5%) Frame = -2 Query: 520 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 341 N I+ E+HT+GN+L+ L + P V FA Y PHPL II++I T SP +A Sbjct: 11 NYLELQIDGEEHTVGNLLKGYLLKVPGVKFASYSKPHPLIDSIILKIMTDGSISPKEALV 70 Query: 340 QAI----NDLDKELENLK 299 +AI D +K +E +K Sbjct: 71 KAIELAEEDTNKFIEEVK 88
>RPO1D_CAEEL (P34476) Probable DNA-directed RNA polymerase I subunit D (EC| 2.7.7.6) Length = 144 Score = 55.8 bits (133), Expect = 1e-07 Identities = 34/125 (27%), Positives = 59/125 (47%) Frame = -2 Query: 661 PRSAPRGISEEGGAKC*SEMNAPDRYERFVVPEGTKKVSFEKDTKIMNAASFTIEREDHT 482 P+ P+ EE ++N P + + ++ SFE+D + + EDHT Sbjct: 26 PQETPQVDDEE-------DLNVPSKKKMEILDPK----SFEQDPSNLTLIMY---EEDHT 71 Query: 481 IGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKELENL 302 IGN ++ L R V F GY +PHPL+ KI+ R+ T + + +A +++ + Sbjct: 72 IGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALEVLAKAFESVEQIFSTI 131 Query: 301 KQAFE 287 + FE Sbjct: 132 RGKFE 136
>RPOL_SULSO (Q980K0) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 92 Score = 55.5 bits (132), Expect = 1e-07 Identities = 29/66 (43%), Positives = 37/66 (56%) Frame = -2 Query: 520 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 341 N IE EDHT+GN++ L R V FA Y PHPL KIIV+I T +P A Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITPKDALL 70 Query: 340 QAINDL 323 +AI ++ Sbjct: 71 KAIENI 76
>RPO1D_MOUSE (P97304) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)| (DNA-directed RNA polymerase I 16 kDa polypeptide) (RPA16) Length = 133 Score = 55.1 bits (131), Expect = 2e-07 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 3/96 (3%) Frame = -2 Query: 565 EGTKKVSFEKDTKI---MNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYK 395 EG +K + E +F + EDHT+GN LR + ++P V F GY HP + K Sbjct: 20 EGERKTALEMVQAAGTDRQCVTFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESK 79 Query: 394 IIVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE 287 I +RI T + + + +N+L +++ FE Sbjct: 80 INLRIQTRGALPAVEPFQKGLNELLNVCQHVLVKFE 115
>RPO1D_BRARE (Q6DRI4) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)| Length = 112 Score = 54.3 bits (129), Expect = 3e-07 Identities = 25/75 (33%), Positives = 40/75 (53%) Frame = -2 Query: 511 SFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAI 332 +F + EDHT+GN LR + + +V F GY + HP + KI RI T ++ + Sbjct: 24 TFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEPLRNGL 83 Query: 331 NDLDKELENLKQAFE 287 N+L +++ Q FE Sbjct: 84 NNLTDVCKHVLQTFE 98
>RPOL_SULAC (P46217) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 90 Score = 52.8 bits (125), Expect = 1e-06 Identities = 30/73 (41%), Positives = 41/73 (56%) Frame = -2 Query: 520 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 341 N I+ E+HTIGN+L+ L + P V FA Y LPHPL I ++I T S +A Sbjct: 11 NYLELQIDGEEHTIGNLLKGMLLKVPGVKFAAYSLPHPLITSITIKILTDGSISAREALI 70 Query: 340 QAINDLDKELENL 302 +AI +L + NL Sbjct: 71 KAI-ELAENYANL 82
>RPO1D_DROME (Q9VIZ0) Probable DNA-directed RNA polymerase I subunit D (EC| 2.7.7.6) Length = 105 Score = 46.6 bits (109), Expect = 7e-05 Identities = 25/71 (35%), Positives = 38/71 (53%) Frame = -2 Query: 511 SFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAI 332 +F E HT+GN L+ + R P V F GY +PHP + K+ RI + +AI Sbjct: 19 TFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRD--------RAI 70 Query: 331 NDLDKELENLK 299 + L + LE+L+ Sbjct: 71 DILKRGLEDLE 81
>RPOL_PYRFU (Q8U4N1) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 95 Score = 45.4 bits (106), Expect = 2e-04 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Frame = -2 Query: 520 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQY--KIIVRIHTASQSSPTQA 347 N F +E EDHT N+L L +P+V F Y + HP+ K R+ T + +P +A Sbjct: 11 NLLEFYLEGEDHTFANLLVETLRENPHVKFTAYTIEHPITMARKPRFRVVTDGEITPEEA 70 Query: 346 YTQAINDLDKELENLKQAFE 287 +A + + + + +A+E Sbjct: 71 LEEAAKKIFERAKEVLEAWE 90
>RPOL_PYRKO (Q5JE88) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 94 Score = 45.1 bits (105), Expect = 2e-04 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Frame = -2 Query: 520 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQY--KIIVRIHTASQSSPTQA 347 N F +E EDHT N+L LH + +V FAGY + HP+ K ++ T + +P +A Sbjct: 11 NLLEFYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPITMARKPRFKVVTDGKITPEKA 70 Query: 346 YTQAINDLDKELENLKQAFE 287 +A + + +A++ Sbjct: 71 LEEAAQKIFDRAREVLEAWK 90
>RPOL_PYRHO (P57671) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 95 Score = 44.3 bits (103), Expect = 3e-04 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%) Frame = -2 Query: 508 FTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQY--KIIVRIHTASQSSPTQAYTQA 335 F +E EDHT N+L L DP+V F Y + HP+ K R+ T + +P +A +A Sbjct: 15 FYLEGEDHTFANLLTEVLREDPHVKFVAYTIEHPITMARKPRFRVVTDGKVTPEKALEEA 74 Query: 334 INDLDKELENLKQAFE 287 + + + A+E Sbjct: 75 ARKIFNRAKEVLDAWE 90
>RPOL_PYRAB (Q9V2M4) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 95 Score = 42.4 bits (98), Expect = 0.001 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Frame = -2 Query: 529 KIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHP--LQYKIIVRIHTASQSSP 356 K + F +E EDHT N+L L +P+V F Y + HP + K R+ T + +P Sbjct: 8 KEQDLLEFYLEGEDHTFANLLTETLRENPHVKFVAYTIEHPILMARKPRFRVVTDGKITP 67 Query: 355 TQAYTQAINDLDKELENLKQAFE 287 +A +A + + + A+E Sbjct: 68 EKALEEAAKKIFDRAKEVLDAWE 90
>RPOL_PYRAE (Q8ZW46) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 92 Score = 37.4 bits (85), Expect = 0.042 Identities = 19/68 (27%), Positives = 37/68 (54%) Frame = -2 Query: 493 EDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQAINDLDKE 314 E +T+ + L L DP+V + + + HPLQ ++ + +P +A +A+N + + Sbjct: 24 ETYTLFSPLVEYLSNDPDVEYVQFDVDHPLQENAYFKL-KVKRGNPLEAIQRAVNAILSD 82 Query: 313 LENLKQAF 290 LE L++ F Sbjct: 83 LEELERGF 90
>RPOL_METTH (O27372) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 85 Score = 37.0 bits (84), Expect = 0.055 Identities = 21/73 (28%), Positives = 30/73 (41%) Frame = -2 Query: 520 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 341 N E E HT+ N+LR L D V A Y + HP+ + + I S +A Sbjct: 9 NEMEIVFEGETHTLCNVLRSILMEDEKVKAAAYSIDHPIVGEPQLYIRAGSPKKSLKAAA 68 Query: 340 QAINDLDKELENL 302 + + D E L Sbjct: 69 ETLRDRCDEFRRL 81
>RPOL_METKA (Q8TZ81) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 112 Score = 32.7 bits (73), Expect = 1.0 Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 12/80 (15%) Frame = -2 Query: 493 EDHTIGNILRMQLHRDPNVHFAGYKLPHPL---QYKI--------IVRIHTASQSSPT-Q 350 EDHT+ N+LR L+R + A Y++ HP+ ++K+ +RI + + + Sbjct: 25 EDHTLCNLLRWALNRQDGI-IATYRIEHPILGKEHKVDEERYVPPKMRIRAVDEDADARE 83 Query: 349 AYTQAINDLDKELENLKQAF 290 A +AI +L + +E K+ F Sbjct: 84 ALERAIEELLELVEEAKEEF 103
>RPOL_NANEQ (Q74MN9) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 96 Score = 32.3 bits (72), Expect = 1.3 Identities = 22/74 (29%), Positives = 30/74 (40%) Frame = -2 Query: 520 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYT 341 N + E HT+ N L+ + V A Y + HPL+ I T A Sbjct: 16 NLIKVQFKGETHTLFNALKEIAYTINGVKKAAYFIEHPLKDNNYFIIETDGSIKARDALI 75 Query: 340 QAINDLDKELENLK 299 QA+ L +EL N K Sbjct: 76 QALKKLKEELLNFK 89
>RPOL_ARCFU (O30032) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 86 Score = 31.6 bits (70), Expect = 2.3 Identities = 21/56 (37%), Positives = 30/56 (53%) Frame = -2 Query: 502 IEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQAYTQA 335 I+ E HT N+L+ L D +V A Y +PHPL + + I T S P +A +A Sbjct: 17 IKGEGHTYLNLLQHYLVEDEDVIVARYNIPHPLIGEPEIYIKT-SGVDPLEAVKRA 71
>RPOL_THEAC (Q9HIC5) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 111 Score = 30.8 bits (68), Expect = 3.9 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 2/95 (2%) Frame = -2 Query: 565 EGTKKVSFEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPL--QYKI 392 E T + S +K N+ + + D+T+ L ++ +D V A Y + HP+ +I Sbjct: 4 ERTAESSLRVISKEKNSITVEMINYDNTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQI 63 Query: 391 IVRIHTASQSSPTQAYTQAINDLDKELENLKQAFE 287 VR+ P A +A+ L K E+L F+ Sbjct: 64 YVRV---KSGKPQSAIKRAVRKLSKLYEDLGTQFQ 95
>RPOL_METJA (Q57832) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 99 Score = 30.8 bits (68), Expect = 3.9 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 8/81 (9%) Frame = -2 Query: 520 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKII--------VRIHTASQ 365 N + EDH++ N+L+ L V A Y + HPL + + I T Sbjct: 11 NLVEIELINEDHSLPNLLKDILLTKEGVKMASYSIDHPLLHPETGRYISNPKITIITEEG 70 Query: 364 SSPTQAYTQAINDLDKELENL 302 + P + + + D+ K + L Sbjct: 71 TDPLEVLKEGLRDIIKMCDTL 91
>GRDI_EUBAC (O69406) Betaine reductase complex component B alpha subunit (EC| 1.21.4.4) (Selenoprotein PB alpha) Length = 442 Score = 30.0 bits (66), Expect = 6.7 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = +2 Query: 362 GLACSMDPNNDLVLKGVRELIAS-EMNIWVPVQLHAEDVADGVILTFNSERCS 517 G+ M P + + G +++ +MN VP +H +V DG I++ + CS Sbjct: 200 GVVFVMQPQSQMEELGYNDMVYGWDMNRMVPTYMHPNEVLDGAIISGSFMPCS 252
>TYPH_PYRKO (Q5JCX3) Putative thymidine phosphorylase (EC 2.4.2.4) (TdRPase)| Length = 503 Score = 30.0 bits (66), Expect = 6.7 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = +2 Query: 326 IIDCLGICLCWGGLACSMDPNNDLVLKGVREL 421 I++ +G CL WGG A ++ P +D+ +K R L Sbjct: 223 IVEKVGACLVWGG-ALNLAPADDITIKAERAL 253
>TSGA_SALTY (Q8ZLK7) Protein tsgA| Length = 393 Score = 29.6 bits (65), Expect = 8.7 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = +3 Query: 339 WVYACVGEDWLAVWILT 389 WVYAC+G +LA++ILT Sbjct: 164 WVYACIGLVYLAIFILT 180
>TSGA_SALTI (Q8Z1Z8) Protein tsgA| Length = 393 Score = 29.6 bits (65), Expect = 8.7 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = +3 Query: 339 WVYACVGEDWLAVWILT 389 WVYAC+G +LA++ILT Sbjct: 164 WVYACIGLVYLAIFILT 180
>TSGA_SALPA (Q5PLW2) Protein tsgA| Length = 393 Score = 29.6 bits (65), Expect = 8.7 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = +3 Query: 339 WVYACVGEDWLAVWILT 389 WVYAC+G +LA++ILT Sbjct: 164 WVYACIGLVYLAIFILT 180
>TSGA_SALCH (Q57J00) Protein tsgA| Length = 393 Score = 29.6 bits (65), Expect = 8.7 Identities = 11/17 (64%), Positives = 15/17 (88%) Frame = +3 Query: 339 WVYACVGEDWLAVWILT 389 WVYAC+G +LA++ILT Sbjct: 164 WVYACIGLVYLAIFILT 180
>EST1_SCHPO (O74804) Telomere elongation protein est1 (EC 2.7.7.-) (Ever| shorter telomeres protein 1) Length = 490 Score = 29.6 bits (65), Expect = 8.7 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +2 Query: 332 DCLGICLCWGGLA-CSMDPNNDLVLKGVRELIASEMNIWVPVQLHAEDVADGVILTFNSE 508 +C+ + W A CS DP +L +++LIA + +H E V+ +IL F Sbjct: 224 ECIVESIYWFSSALCSEDPPKSALLNLLKQLIAFYRRCFA---VHFEFVSPMMILLFIIS 280 Query: 509 RCSIHDL 529 C IH L Sbjct: 281 DCCIHSL 287 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,874,223 Number of Sequences: 219361 Number of extensions: 2012611 Number of successful extensions: 4860 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 4683 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4856 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6598423128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
