ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017828.1| Zea mays clone EL01N0508G02.c mRNA sequence 307 3e-80
2dbj|AK099622.1| Oryza sativa (japonica cultivar-group) cDNA clon... 289 6e-75
3ref|XM_476775.1| Oryza sativa (japonica cultivar-group), mRNA 283 4e-73
4dbj|AK068132.1| Oryza sativa (japonica cultivar-group) cDNA clon... 281 1e-72
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
6dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic D... 101 3e-18
7dbj|AP006144.1| Lotus japonicus genomic DNA, chromosome 3, clone... 66 2e-07
8gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome 46 0.15
9gb|AC114917.2| Mus musculus chromosome 8 clone RP23-84K6, comple... 42 2.3
10gb|AC084821.26| Mus musculus strain C57BL/6J clone rp23-395h6 ma... 42 2.3
11ref|XM_776377.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 2.3
12emb|BX649627.10| Zebrafish DNA sequence from clone DKEY-78B7 in ... 42 2.3
13emb|BX511176.6| Zebrafish DNA sequence from clone CH211-8C17 in ... 42 2.3
14dbj|AB223866.1| Aspergillus oryzae cDNA, contig sequence: AoEST0707 42 2.3
15gb|AF477990.1| Mus musculus CDT1 protein gene, complete cds 42 2.3
16ref|XM_686968.1| PREDICTED: Danio rerio hypothetical protein LOC... 42 2.3
17gb|AC151999.5| Mus musculus BAC clone RP23-98D11 from chromosome... 42 2.3
18emb|AL627392.12| Mouse DNA sequence from clone RP23-185I12 on ch... 42 2.3
19ref|NM_115068.2| Arabidopsis thaliana ATRPB13.6; DNA binding / D... 40 9.2
20gb|AC099628.7| Mus musculus chromosome 1, clone RP24-82L18, comp... 40 9.2
21gb|AC159238.2| Mus musculus BAC clone RP24-477O8 from chromosome... 40 9.2
22gb|AC101830.7| Mus musculus chromosome 1, clone RP24-480B20, com... 40 9.2
23emb|AL365204.11| Human DNA sequence from clone RP11-321L2 on chr... 40 9.2
24gb|AC157990.4| Mus musculus chromosome 5, clone RP24-307I24, com... 40 9.2
25emb|AL132821.17|HSDJ999L4 Human DNA sequence from clone RP5-999L... 40 9.2
26emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segmen... 40 9.2
27emb|BX927184.5| Zebrafish DNA sequence from clone DKEY-125I20 in... 40 9.2
28gb|AC117399.2| Homo sapiens 3 BAC RP11-179B14 (Roswell Park Canc... 40 9.2
29gb|AC092110.9| Homo sapiens 12 BAC RP11-287J11 (Roswell Park Can... 40 9.2
30gb|AC022532.13| Homo sapiens chromosome 10 clone RP11-104F15, co... 40 9.2
31gb|AC099505.2| Homo sapiens chromosome 5 clone RP11-220O3, compl... 40 9.2
32emb|BX825290.1|CNS0A6H0 Arabidopsis thaliana Full-length cDNA Co... 40 9.2
33gb|BT005984.1| Arabidopsis thaliana At3g52090 gene, complete cds 40 9.2
34ref|XM_219594.3| PREDICTED: Rattus norvegicus similar to membran... 40 9.2
35emb|AL831750.8| Mouse DNA sequence from clone RP23-37L2 on chrom... 40 9.2
36gb|AC102730.15| Mus musculus chromosome 5, clone RP24-194J15, co... 40 9.2
37gb|AC007436.1| Homo sapiens 12 BAC RP11-436I9 (Roswell Park Canc... 40 9.2
38gb|U28048.1|ATU28048 Arabidopsis thaliana RNA polymerase II 13.6... 40 9.2
39gb|AC008868.4| Homo sapiens chromosome 5 clone CTD-2194F4, compl... 40 9.2 
>gb|BT017828.1| Zea mays clone EL01N0508G02.c mRNA sequence
          Length = 731

 Score =  307 bits (155), Expect = 3e-80
 Identities = 281/323 (86%)
 Strand = Plus / Minus

                                                                       
Query: 286 cctcaaaagcttgcttcaggttctcaagctccttgtctagatcattgattgcctgggtat 345
           |||||||||||||||| |||| ||||||||| ||||||||||||||||| |||||||| |
Sbjct: 516 cctcaaaagcttgcttaaggtactcaagctctttgtctagatcattgatagcctgggtgt 457

                                                                       
Query: 346 atgcctgtgttggggaggattggcttgcagtatggatcctaacaatgatcttgtactgaa 405
           | ||||| || |||||||| ||||| |  || |||||||||||||||||||||||||| |
Sbjct: 456 aggcctgcgtcggggaggactggctcgttgtgtggatcctaacaatgatcttgtactgga 397

                                                                       
Query: 406 gggggtgagggagcttatagccagcgaaatgaacatttgggtccctgtgcagctgcatgc 465
           | ||||||||||||||||| || || ||  ||||||||||||| ||||||| ||||||||
Sbjct: 396 gtgggtgagggagcttatacccggcaaagagaacatttgggtctctgtgcaactgcatgc 337

                                                                       
Query: 466 ggaggatgttgccgatggtgtgatcctcacgttcaatagtgaaagatgcagcattcatga 525
           ||||||| ||||| |  ||||||||||| ||||| | |||||| |||||||||||||  |
Sbjct: 336 ggaggatattgcctacagtgtgatcctcgcgttcgacagtgaatgatgcagcattcacaa 277

                                                                       
Query: 526 tctttgtatccttctcaaaagacaccttctttgtgccctcaggcacaacaaagcgctcat 585
           ||||||||||| ||||| | ||||| ||||| |||||||| ||||| || || |||||||
Sbjct: 276 tctttgtatccctctcataggacactttcttggtgccctctggcacgacgaaacgctcat 217

                                  
Query: 586 agcggtcaggggcattcatctcc 608
           | |||||||||||||||||||||
Sbjct: 216 aacggtcaggggcattcatctcc 194
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>dbj|AK099622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013053F13, full
           insert sequence
          Length = 787

 Score =  289 bits (146), Expect = 6e-75
 Identities = 278/322 (86%)
 Strand = Plus / Minus

                                                                       
Query: 286 cctcaaaagcttgcttcaggttctcaagctccttgtctagatcattgattgcctgggtat 345
           |||||||||||||||| || ||||||||||||||||||| ||||||||||||||| || |
Sbjct: 496 cctcaaaagcttgcttgagattctcaagctccttgtctaaatcattgattgcctgtgtgt 437

                                                                       
Query: 346 atgcctgtgttggggaggattggcttgcagtatggatcctaacaatgatcttgtactgaa 405
           | || || || |||| ||| ||| |||||||||||| ||| |||| ||||||||||||||
Sbjct: 436 acgcttgagtaggggtggactggtttgcagtatggaccctgacaaggatcttgtactgaa 377

                                                                       
Query: 406 gggggtgagggagcttatagccagcgaaatgaacatttgggtccctgtgcagctgcatgc 465
           |||| |||||||||||||| ||||| ||  | || |||||||||||||| ||||||||||
Sbjct: 376 ggggatgagggagcttataaccagcaaagaggacgtttgggtccctgtggagctgcatgc 317

                                                                       
Query: 466 ggaggatgttgccgatggtgtgatcctcacgttcaatagtgaaagatgcagcattcatga 525
           ||||||||||||| |||||||| |||||||| ||||| ||||| ||  |||||||||  |
Sbjct: 316 ggaggatgttgccaatggtgtggtcctcacgctcaattgtgaatgacccagcattcacaa 257

                                                                       
Query: 526 tctttgtatccttctcaaaagacaccttctttgtgccctcaggcacaacaaagcgctcat 585
           |||||||||||  |||| | || |||||||| || ||||||||||| |||||||| || |
Sbjct: 256 tctttgtatcccgctcatatgataccttcttggttccctcaggcaccacaaagcgttcgt 197

                                 
Query: 586 agcggtcaggggcattcatctc 607
           ||||||| || |||||||||||
Sbjct: 196 agcggtcgggagcattcatctc 175



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 140 ttggcctagtagccctgcttcatcctttcctcgaatcgggtcttctcatc 189
           ||||||||||| ||||||||   |||||||||| | ||| ||||||||||
Sbjct: 545 ttggcctagtatccctgcttaggcctttcctcgtagcggatcttctcatc 496
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>ref|XM_476775.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 363

 Score =  283 bits (143), Expect = 4e-73
 Identities = 275/319 (86%)
 Strand = Plus / Minus

                                                                       
Query: 286 cctcaaaagcttgcttcaggttctcaagctccttgtctagatcattgattgcctgggtat 345
           |||||||||||||||| || ||||||||||||||||||| ||||||||||||||| || |
Sbjct: 319 cctcaaaagcttgcttgagattctcaagctccttgtctaaatcattgattgcctgtgtgt 260

                                                                       
Query: 346 atgcctgtgttggggaggattggcttgcagtatggatcctaacaatgatcttgtactgaa 405
           | || || || |||| ||| ||| |||||||||||| ||| |||| ||||||||||||||
Sbjct: 259 acgcttgagtaggggtggactggtttgcagtatggaccctgacaaggatcttgtactgaa 200

                                                                       
Query: 406 gggggtgagggagcttatagccagcgaaatgaacatttgggtccctgtgcagctgcatgc 465
           |||| |||||||||||||| ||||| ||  | || |||||||||||||| ||||||||||
Sbjct: 199 ggggatgagggagcttataaccagcaaagaggacgtttgggtccctgtggagctgcatgc 140

                                                                       
Query: 466 ggaggatgttgccgatggtgtgatcctcacgttcaatagtgaaagatgcagcattcatga 525
           ||||||||||||| |||||||| |||||||| ||||| ||||| ||  |||||||||  |
Sbjct: 139 ggaggatgttgccaatggtgtggtcctcacgctcaattgtgaatgacccagcattcacaa 80

                                                                       
Query: 526 tctttgtatccttctcaaaagacaccttctttgtgccctcaggcacaacaaagcgctcat 585
           |||||||||||  |||| | || |||||||| || ||||||||||| |||||||| || |
Sbjct: 79  tctttgtatcccgctcatatgataccttcttggttccctcaggcaccacaaagcgttcgt 20

                              
Query: 586 agcggtcaggggcattcat 604
           ||||||| || ||||||||
Sbjct: 19  agcggtcgggagcattcat 1
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>dbj|AK068132.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131J17, full
           insert sequence
          Length = 812

 Score =  281 bits (142), Expect = 1e-72
 Identities = 277/322 (86%)
 Strand = Plus / Minus

                                                                       
Query: 286 cctcaaaagcttgcttcaggttctcaagctccttgtctagatcattgattgcctgggtat 345
           |||||||||||||||| || ||||||||||||||||||| ||||||||||||||| || |
Sbjct: 498 cctcaaaagcttgcttgagattctcaagctccttgtctaaatcattgattgcctgtgtgt 439

                                                                       
Query: 346 atgcctgtgttggggaggattggcttgcagtatggatcctaacaatgatcttgtactgaa 405
           | || || || |||| ||| ||| |||||||||||| ||| |||| ||||||||||||||
Sbjct: 438 acgcttgagtaggggtggactggtttgcagtatggaccctgacaaggatcttgtactgaa 379

                                                                       
Query: 406 gggggtgagggagcttatagccagcgaaatgaacatttgggtccctgtgcagctgcatgc 465
           |||| |||||||||||||| ||||| ||  | || |||||||||||||| ||||||||||
Sbjct: 378 ggggatgagggagcttataaccagcaaagaggacgtttgggtccctgtggagctgcatgc 319

                                                                       
Query: 466 ggaggatgttgccgatggtgtgatcctcacgttcaatagtgaaagatgcagcattcatga 525
           ||||||||||||| |||||||| |||||||| ||||| ||||| ||  |||||||||  |
Sbjct: 318 ggaggatgttgccaatggtgtggtcctcacgctcaattgtgaatgacccagcattcacaa 259

                                                                       
Query: 526 tctttgtatccttctcaaaagacaccttctttgtgccctcaggcacaacaaagcgctcat 585
           |||||||||||  |||| | || |||||||| || ||| ||||||| |||||||| || |
Sbjct: 258 tctttgtatcccgctcatatgataccttcttggttcccccaggcaccacaaagcgttcgt 199

                                 
Query: 586 agcggtcaggggcattcatctc 607
           ||||||| || |||||||||||
Sbjct: 198 agcggtcgggagcattcatctc 177



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 140 ttggcctagtagccctgcttcatcctttcctcgaatcgggtcttctcatc 189
           ||||||||||| ||||||||   |||||||||| | ||| ||||||||||
Sbjct: 547 ttggcctagtatccctgcttaggcctttcctcgtagcggatcttctcatc 498
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  101 bits (51), Expect = 3e-18
 Identities = 87/99 (87%)
 Strand = Plus / Plus

                                                                           
Query: 283     agacctcaaaagcttgcttcaggttctcaagctccttgtctagatcattgattgcctggg 342
               ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| |
Sbjct: 3846800 agacctcaaaagcttgcttgagattctcaagctccttgtctaaatcattgattgcctgtg 3846859

                                                      
Query: 343     tatatgcctgtgttggggaggattggcttgcagtatgga 381
               | || || || || |||| ||| ||| ||||||||||||
Sbjct: 3846860 tgtacgcttgagtaggggtggactggtttgcagtatgga 3846898



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                           
Query: 461     catgcggaggatgttgccgatggtgtgatcctcacgttcaatagtgaaagatgcagcatt 520
               |||||||||||||||||| |||||||| |||||||| ||||| ||||| ||  |||||||
Sbjct: 3847143 catgcggaggatgttgccaatggtgtggtcctcacgctcaattgtgaatgacccagcatt 3847202

                               
Query: 521     catgatctttgtatcc 536
               ||  ||||||||||||
Sbjct: 3847203 cacaatctttgtatcc 3847218



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                           
Query: 387     acaatgatcttgtactgaagggggtgagggagcttatagccagcgaaatgaacatttggg 446
               |||| |||||||||||||||||| |||||||||||||| ||||| ||  | || ||||||
Sbjct: 3846984 acaaggatcttgtactgaaggggatgagggagcttataaccagcaaagaggacgtttggg 3847043

                              
Query: 447     tccctgtgcagctgc 461
               |||||||| ||||||
Sbjct: 3847044 tccctgtggagctgc 3847058



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                        
Query: 551     cttctttgtgccctcaggcacaacaaagcgctcatagcggtcaggggcattcatctc 607
               |||||| || ||||||||||| |||||||| || |||||||| || |||||||||||
Sbjct: 3849037 cttcttggttccctcaggcaccacaaagcgttcgtagcggtcgggagcattcatctc 3849093



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                                 
Query: 140     ttggcctagtagccctgcttcatcctttcctcgaatcgggtcttctcatc 189
               ||||||||||| ||||||||   |||||||||| | ||| ||||||||||
Sbjct: 3846400 ttggcctagtatccctgcttaggcctttcctcgtagcggatcttctcatc 3846449
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>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0496D04
          Length = 197358

 Score =  101 bits (51), Expect = 3e-18
 Identities = 87/99 (87%)
 Strand = Plus / Plus

                                                                         
Query: 283   agacctcaaaagcttgcttcaggttctcaagctccttgtctagatcattgattgcctggg 342
             ||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| |
Sbjct: 85912 agacctcaaaagcttgcttgagattctcaagctccttgtctaaatcattgattgcctgtg 85971

                                                    
Query: 343   tatatgcctgtgttggggaggattggcttgcagtatgga 381
             | || || || || |||| ||| ||| ||||||||||||
Sbjct: 85972 tgtacgcttgagtaggggtggactggtttgcagtatgga 86010



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                         
Query: 461   catgcggaggatgttgccgatggtgtgatcctcacgttcaatagtgaaagatgcagcatt 520
             |||||||||||||||||| |||||||| |||||||| ||||| ||||| ||  |||||||
Sbjct: 86255 catgcggaggatgttgccaatggtgtggtcctcacgctcaattgtgaatgacccagcatt 86314

                             
Query: 521   catgatctttgtatcc 536
             ||  ||||||||||||
Sbjct: 86315 cacaatctttgtatcc 86330



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                         
Query: 387   acaatgatcttgtactgaagggggtgagggagcttatagccagcgaaatgaacatttggg 446
             |||| |||||||||||||||||| |||||||||||||| ||||| ||  | || ||||||
Sbjct: 86096 acaaggatcttgtactgaaggggatgagggagcttataaccagcaaagaggacgtttggg 86155

                            
Query: 447   tccctgtgcagctgc 461
             |||||||| ||||||
Sbjct: 86156 tccctgtggagctgc 86170



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                      
Query: 551   cttctttgtgccctcaggcacaacaaagcgctcatagcggtcaggggcattcatctc 607
             |||||| || ||||||||||| |||||||| || |||||||| || |||||||||||
Sbjct: 88149 cttcttggttccctcaggcaccacaaagcgttcgtagcggtcgggagcattcatctc 88205



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                               
Query: 140   ttggcctagtagccctgcttcatcctttcctcgaatcgggtcttctcatc 189
             ||||||||||| ||||||||   |||||||||| | ||| ||||||||||
Sbjct: 85512 ttggcctagtatccctgcttaggcctttcctcgtagcggatcttctcatc 85561
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>dbj|AP006144.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT23P21, TM0261,
             complete sequence
          Length = 121882

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                         
Query: 465   cggaggatgttgccgatggtgtgatcctcacgttcaatagtgaaagatgcagcattcatg 524
             ||||||||||| ||||||||||||||||| || || || ||||| ||||| ||||| |||
Sbjct: 40428 cggaggatgtttccgatggtgtgatcctctcgctctatggtgaacgatgccgcattgatg 40369

                  
Query: 525   atctt 529
             |||||
Sbjct: 40368 atctt 40364
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>gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome
          Length = 1545895

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 303    aggttctcaagctccttgtctagatcattga 333
              ||||||| ||||||||||| |||||||||||
Sbjct: 723776 aggttcttaagctccttgtatagatcattga 723746
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>gb|AC114917.2| Mus musculus chromosome 8 clone RP23-84K6, complete sequence
          Length = 181442

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 547    acaccttctttgtgccctcag 567
              |||||||||||||||||||||
Sbjct: 170532 acaccttctttgtgccctcag 170512
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>gb|AC084821.26| Mus musculus strain C57BL/6J clone rp23-395h6 map 1, complete sequence
          Length = 211776

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 404   aagggggtgagggagcttata 424
             |||||||||||||||||||||
Sbjct: 91272 aagggggtgagggagcttata 91252
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>ref|XM_776377.1| PREDICTED: Strongylocentrotus purpuratus similar to
           anaphase-promoting complex subunit 7 (LOC576029), mRNA
          Length = 738

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 373 cagtatggatcctaacaatga 393
           |||||||||||||||||||||
Sbjct: 483 cagtatggatcctaacaatga 503
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>emb|BX649627.10| Zebrafish DNA sequence from clone DKEY-78B7 in linkage group 3,
             complete sequence
          Length = 92147

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 150   agccctgcttcatcctttcct 170
             |||||||||||||||||||||
Sbjct: 12943 agccctgcttcatcctttcct 12923
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>emb|BX511176.6| Zebrafish DNA sequence from clone CH211-8C17 in linkage group 3,
             complete sequence
          Length = 116813

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 150   agccctgcttcatcctttcct 170
             |||||||||||||||||||||
Sbjct: 35150 agccctgcttcatcctttcct 35130
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>dbj|AB223866.1| Aspergillus oryzae cDNA, contig sequence: AoEST0707
          Length = 1154

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 582 tcatagcggtcaggggcattcatct 606
           ||||| |||||||||||||||||||
Sbjct: 414 tcataacggtcaggggcattcatct 390
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>gb|AF477990.1| Mus musculus CDT1 protein gene, complete cds
          Length = 7485

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 547  acaccttctttgtgccctcag 567
            |||||||||||||||||||||
Sbjct: 5709 acaccttctttgtgccctcag 5689
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>ref|XM_686968.1| PREDICTED: Danio rerio hypothetical protein LOC563607 (LOC563607),
           mRNA
          Length = 1800

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 150 agccctgcttcatcctttcct 170
           |||||||||||||||||||||
Sbjct: 250 agccctgcttcatcctttcct 230
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>gb|AC151999.5| Mus musculus BAC clone RP23-98D11 from chromosome 8, complete sequence
          Length = 229414

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 547   acaccttctttgtgccctcag 567
             |||||||||||||||||||||
Sbjct: 99715 acaccttctttgtgccctcag 99695
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>emb|AL627392.12| Mouse DNA sequence from clone RP23-185I12 on chromosome 4, complete
              sequence
          Length = 182520

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 506    gaaagatgcagcattcatgatcttt 530
              |||| ||||||||||||||||||||
Sbjct: 115113 gaaaaatgcagcattcatgatcttt 115137
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>ref|NM_115068.2| Arabidopsis thaliana ATRPB13.6; DNA binding / DNA-directed RNA
           polymerase AT3G52090 (ATRPB13.6) mRNA, complete cds
          Length = 620

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 83/104 (79%)
 Strand = Plus / Minus

                                                                       
Query: 312 agctccttgtctagatcattgattgcctgggtatatgcctgtgttggggaggattggctt 371
           ||||||||||| |  |||||||| |||||| | ||||| ||  ||||||| || ||||||
Sbjct: 347 agctccttgtccaagtcattgatggcctggttgtatgcttgcattggggaagactggctt 288

                                                       
Query: 372 gcagtatggatcctaacaatgatcttgtactgaagggggtgagg 415
           |  || || ||||| || ||||| ||||||| ||| || |||||
Sbjct: 287 gttgtgtgaatcctcactatgattttgtacttaagaggatgagg 244
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>gb|AC099628.7| Mus musculus chromosome 1, clone RP24-82L18, complete sequence
          Length = 171875

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 269    tatgcacaagaaacagacctcaaa 292
              ||||||||||| ||||||||||||
Sbjct: 161315 tatgcacaagacacagacctcaaa 161338
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>gb|AC159238.2| Mus musculus BAC clone RP24-477O8 from chromosome 12, complete sequence
          Length = 176407

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 552    ttctttgtgccctcaggcacaaca 575
              |||||||||||||||| |||||||
Sbjct: 126777 ttctttgtgccctcagtcacaaca 126800
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>gb|AC101830.7| Mus musculus chromosome 1, clone RP24-480B20, complete sequence
          Length = 158825

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 269   tatgcacaagaaacagacctcaaa 292
             ||||||||||| ||||||||||||
Sbjct: 52011 tatgcacaagacacagacctcaaa 52034
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>emb|AL365204.11| Human DNA sequence from clone RP11-321L2 on chromosome 9 Contains the
             3' end of a novel gene, a novel gene and a CpG island,
             complete sequence
          Length = 129191

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   acaagaaacagacctcaaaa 293
             ||||||||||||||||||||
Sbjct: 48441 acaagaaacagacctcaaaa 48422
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>gb|AC157990.4| Mus musculus chromosome 5, clone RP24-307I24, complete sequence
          Length = 153860

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 544   aagacaccttctttgtgccctcag 567
             |||||| |||||||||||||||||
Sbjct: 85312 aagacagcttctttgtgccctcag 85335
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>emb|AL132821.17|HSDJ999L4 Human DNA sequence from clone RP5-999L4 on chromosome 20 Contains the
             RPL12L3 gene for ribosomal protein L12-like 3 pseudogene
             and the 5' end of the RIN2 gene for Ras and Rab interactor
             2, complete sequence
          Length = 100080

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 401   ctgaagggggtgagggagct 420
             ||||||||||||||||||||
Sbjct: 40993 ctgaagggggtgagggagct 40974
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>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7
          Length = 349122

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 626    tccttcctctgaaattcctcgagg 649
              |||| |||||||||||||||||||
Sbjct: 151498 tcctgcctctgaaattcctcgagg 151521
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>emb|BX927184.5| Zebrafish DNA sequence from clone DKEY-125I20 in linkage group 5,
             complete sequence
          Length = 160345

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    caatccctgactattttttc 72
             ||||||||||||||||||||
Sbjct: 28678 caatccctgactattttttc 28659
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>gb|AC117399.2| Homo sapiens 3 BAC RP11-179B14 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 94000

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   acaagaaacagacctcaaaa 293
             ||||||||||||||||||||
Sbjct: 57672 acaagaaacagacctcaaaa 57653
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>gb|AC092110.9| Homo sapiens 12 BAC RP11-287J11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 181207

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 519   ttcatgatctttgtatcctt 538
             ||||||||||||||||||||
Sbjct: 23174 ttcatgatctttgtatcctt 23155
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>gb|AC022532.13| Homo sapiens chromosome 10 clone RP11-104F15, complete sequence
          Length = 208823

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   tgtactgaagggggtgaggg 416
             ||||||||||||||||||||
Sbjct: 19755 tgtactgaagggggtgaggg 19736
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>gb|AC099505.2| Homo sapiens chromosome 5 clone RP11-220O3, complete sequence
          Length = 49773

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    cctgactattttttctctac 77
             ||||||||||||||||||||
Sbjct: 13796 cctgactattttttctctac 13777
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>emb|BX825290.1|CNS0A6H0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL27ZA08 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 589

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 83/104 (79%)
 Strand = Plus / Minus

                                                                       
Query: 312 agctccttgtctagatcattgattgcctgggtatatgcctgtgttggggaggattggctt 371
           ||||||||||| |  |||||||| |||||| | ||||| ||  ||||||| || ||||||
Sbjct: 326 agctccttgtccaagtcattgatggcctggttgtatgcttgcattggggaagactggctt 267

                                                       
Query: 372 gcagtatggatcctaacaatgatcttgtactgaagggggtgagg 415
           |  || || ||||| || ||||| ||||||| ||| || |||||
Sbjct: 266 gttgtgtgaatcctcactatgattttgtacttaagaggatgagg 223
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>gb|BT005984.1| Arabidopsis thaliana At3g52090 gene, complete cds
          Length = 351

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 83/104 (79%)
 Strand = Plus / Minus

                                                                       
Query: 312 agctccttgtctagatcattgattgcctgggtatatgcctgtgttggggaggattggctt 371
           ||||||||||| |  |||||||| |||||| | ||||| ||  ||||||| || ||||||
Sbjct: 293 agctccttgtccaagtcattgatggcctggttgtatgcttgcattggggaagactggctt 234

                                                       
Query: 372 gcagtatggatcctaacaatgatcttgtactgaagggggtgagg 415
           |  || || ||||| || ||||| ||||||| ||| || |||||
Sbjct: 233 gttgtgtgaatcctcactatgattttgtacttaagaggatgagg 190
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>ref|XM_219594.3| PREDICTED: Rattus norvegicus similar to membrane-spanning
           4-domains, subfamily A, member 4C (LOC293746), mRNA
          Length = 2280

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 623 tcctccttcctctgaaattc 642
           ||||||||||||||||||||
Sbjct: 150 tcctccttcctctgaaattc 169
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>emb|AL831750.8| Mouse DNA sequence from clone RP23-37L2 on chromosome X, complete
             sequence
          Length = 189991

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   agaaacagacctcaaaagct 296
             ||||||||||||||||||||
Sbjct: 17187 agaaacagacctcaaaagct 17206
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>gb|AC102730.15| Mus musculus chromosome 5, clone RP24-194J15, complete sequence
          Length = 167135

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 544   aagacaccttctttgtgccctcag 567
             |||||| |||||||||||||||||
Sbjct: 27848 aagacagcttctttgtgccctcag 27825
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>gb|AC007436.1| Homo sapiens 12 BAC RP11-436I9 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 163881

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 625  ctccttcctctgaaattcct 644
            ||||||||||||||||||||
Sbjct: 3402 ctccttcctctgaaattcct 3421
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>gb|U28048.1|ATU28048 Arabidopsis thaliana RNA polymerase II 13.6 kDa subunit (AtRPB13.6)
           mRNA, complete cds
          Length = 617

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 83/104 (79%)
 Strand = Plus / Minus

                                                                       
Query: 312 agctccttgtctagatcattgattgcctgggtatatgcctgtgttggggaggattggctt 371
           ||||||||||| |  |||||||| |||||| | ||||| ||  ||||||| || ||||||
Sbjct: 344 agctccttgtccaagtcattgatggcctggttgtatgcttgcattggggaagactggctt 285

                                                       
Query: 372 gcagtatggatcctaacaatgatcttgtactgaagggggtgagg 415
           |  || || ||||| || ||||| ||||||| ||| || |||||
Sbjct: 284 gttgtgtgaatcctcactatgattttgtacttaagaggatgagg 241
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>gb|AC008868.4| Homo sapiens chromosome 5 clone CTD-2194F4, complete sequence
          Length = 123698

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    cctgactattttttctctac 77
             ||||||||||||||||||||
Sbjct: 16590 cctgactattttttctctac 16609


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,599,278
Number of Sequences: 3902068
Number of extensions: 5599278
Number of successful extensions: 106068
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105954
Number of HSP's gapped (non-prelim): 114
length of query: 674
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 651
effective length of database: 17,143,297,704
effective search space: 11160286805304
effective search space used: 11160286805304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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