ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CP4P1_DROME (Q9V558) Cytochrome P450 4p1 (EC 1.14.-.-) (CYPIVP1) 29 2.8
2SYH_CORJK (Q4JVE8) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histi... 28 4.9
3NPP17_CAEEL (Q93454) Nucleoporin-17 (Nuclear pore complex protei... 28 6.3
4EFTU_CYAPA (P17245) Elongation factor Tu (EF-Tu) 28 8.3

>CP4P1_DROME (Q9V558) Cytochrome P450 4p1 (EC 1.14.-.-) (CYPIVP1)|
          Length = 513

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +1

Query: 22  KLRGSSTIPDYFFSTAVQTSDITSSKDSFTSASN--TLGLVA-LLHPFLESGLLITFGK 189
           K  G+S I +Y F  A+       S ++  +  N  T GLV   LHPFL +GLL + GK
Sbjct: 78  KEMGTSYI-EYVFGKAIYNIIDADSAENVLNHPNLITKGLVYNFLHPFLRTGLLTSTGK 135



to top

>SYH_CORJK (Q4JVE8) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 443

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 13  RFYKLRGSSTIPDYFFSTAVQTSDITSSKDSFTSASNTLGLVALLHPFLESGLLITFGKG 192
           +F  L     +PDY   T+ +   +   KD+FTSA++  G   +  P  E   L   G G
Sbjct: 18  KFKALSAPKGVPDYVPPTSAEFKAV---KDAFTSAAHAAGYEHVELPIFEETSLFARGVG 74



to top

>NPP17_CAEEL (Q93454) Nucleoporin-17 (Nuclear pore complex protein 17) (CeRAE1)|
          Length = 373

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
 Frame = +1

Query: 67  AVQTSDITSSKDSFT-----SASNTLGLVAL-------LHPFLESGLLITFGKGGRVPLW 210
           AVQ  D+ + KD+FT     SA    G   +        HP  + G L+T G  GR  +W
Sbjct: 248 AVQYVDVANPKDNFTFKCHRSAELVNGFQEIYAVNDICFHP--QHGTLVTIGSDGRYSMW 305



to top

>EFTU_CYAPA (P17245) Elongation factor Tu (EF-Tu)|
          Length = 409

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 12/55 (21%)
 Frame = +1

Query: 70  VQTSDITSSKDSFTSASNTLG-----------LVALLHPF-LESGLLITFGKGGR 198
           V+T+D+T S D+FT+   +              V+L+HP  +E G+     +GGR
Sbjct: 343 VRTTDVTGSIDAFTADDGSNAEMVMPGDRIKMTVSLVHPIAIEQGMRFAIREGGR 397


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,711,731
Number of Sequences: 219361
Number of extensions: 607852
Number of successful extensions: 1659
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1658
length of database: 80,573,946
effective HSP length: 54
effective length of database: 68,728,452
effective search space used: 1649482848
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top