ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MCH1_YARLI (Q6CGU8) Probable transporter MCH1 44 2e-04
2MCH1_NEUCR (Q9P3K8) Probable transporter MCH1 38 0.017
3OCTB1_DROME (Q9VCZ3) Octopamine receptor beta-1 (DmOct-beta-1R) ... 36 0.086
4MUC4_HUMAN (Q99102) Mucin-4 (Tracheobronchial mucin) (Fragment) 34 0.25
5PHT19_ARATH (Q9S735) Inorganic phosphate transporter 1-9 (AtPht1... 33 0.43
6HUNB_DROLI (O46244) Protein hunchback (Fragments) 31 2.1
7HUNB_DRODS (O46240) Protein hunchback (Fragments) 31 2.1
8YM30_YEAST (Q03795) Hypothetical 60.0 kDa protein in IMP1-HLJ1 i... 31 2.1
9ATL2F_ARATH (O64762) Putative RING-H2 finger protein ATL2F 31 2.8
10PHT18_ARATH (Q9SYQ1) Inorganic phosphate transporter 1-8 (AtPht1... 30 3.6
11MAZ_MOUSE (P56671) Myc-associated zinc finger protein (MAZI) (Pu... 30 3.6
12MAZ_MESAU (P56670) Myc-associated zinc finger protein (MAZI) (Pu... 30 3.6
13MAZ_HUMAN (P56270) Myc-associated zinc finger protein (MAZI) (Pu... 30 4.7
14PLSB_CUCSA (Q39639) Glycerol-3-phosphate acyltransferase, chloro... 30 6.1
15OCLN_PONPY (Q5RFS5) Occludin 30 6.1
16OCLN_HUMAN (Q16625) Occludin 30 6.1
17EDG1_RAT (P48303) Sphingosine 1-phosphate receptor Edg-1 (Sphing... 30 6.1
18HAK8_ORYSA (Q8VXB5) Putative potassium transporter 8 (OsHAK8) 29 8.0

>MCH1_YARLI (Q6CGU8) Probable transporter MCH1|
          Length = 486

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 33/129 (25%), Positives = 65/129 (50%), Gaps = 6/129 (4%)
 Frame = -1

Query: 564 ACVGHFLIAFGV------PQSLYAASVVIGFCFGAQWPLLFAIISEVFGLKYYSTLYNFG 403
           AC+ H ++  G+       +     ++V GF +G+ + L+  I+++V+G+    T++   
Sbjct: 355 ACI-HLMVPSGIFTVFDNAKYFSVVTIVNGFSYGSSFTLVPTIVTKVWGIANLGTIWGSF 413

Query: 402 SVASPIGAYALNVRVAGYLYDVEAARQHGGTLDGAGDKTCIGVQCFKLAFLIITAVTVAG 223
            +A  +G+    +  A  +YD  AA + G    G+  + C GV C+ L F +IT   +A 
Sbjct: 414 ILALAVGSLGYGLLFAK-VYD--AASEVGV---GSMSQVCSGVHCYGLTF-VITGTGLAF 466

Query: 222 ALVSLVLVW 196
           A  ++  +W
Sbjct: 467 AAAAVFFIW 475



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>MCH1_NEUCR (Q9P3K8) Probable transporter MCH1|
          Length = 598

 Score = 38.1 bits (87), Expect = 0.017
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
 Frame = -1

Query: 525 QSLYAASVVIGFCFGAQWPLLFAIISEVFGLKYYSTLYNFGSVASPIGAYALN-VRVAGY 349
           +  + AS ++G  +GA + L   II+ ++G++ ++T +   ++   +GA     V  A Y
Sbjct: 478 ERFWVASGLVGAGYGAVFSLTPIIITVIWGVENFATNWGIVAMFPALGATFWGLVYSAVY 537

Query: 348 LYDVEAARQHGGTLDGAGDKTCIGVQCFKLAFLIITA-VTVAGALV 214
              VE A  +G    G  D+ C G +C+  AF  + A V VA  LV
Sbjct: 538 QSGVEKAASNG--QGGEEDQFCYGSECYASAFWAMAASVWVACGLV 581



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>OCTB1_DROME (Q9VCZ3) Octopamine receptor beta-1 (DmOct-beta-1R) (DmOA2)|
          Length = 508

 Score = 35.8 bits (81), Expect = 0.086
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
 Frame = -1

Query: 405 GSVASPIGAYALNVR--VAGYLYDVEAARQHGGTLDGAGDKTCIGVQCFKLAFLIITAVT 232
           GS      + A++V   VAG   D++A+       DG+     + V+CF + F+I+ A  
Sbjct: 64  GSAVGSGSSIAVSVEDVVAGQAQDIQASEGSTDDADGSSHLALVFVKCFIIGFIILAA-- 121

Query: 231 VAGALVSLVLVWRTRK 184
           + G ++ +V V R RK
Sbjct: 122 ILGNMLVIVSVMRHRK 137



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>MUC4_HUMAN (Q99102) Mucin-4 (Tracheobronchial mucin) (Fragment)|
          Length = 610

 Score = 34.3 bits (77), Expect = 0.25
 Identities = 42/141 (29%), Positives = 58/141 (41%), Gaps = 3/141 (2%)
 Frame = +2

Query: 71  PVDRT*SSQPLHYSFLPLTALDSPSASLNLA*MSLR*NLRVRQTSTSETSAPATVTAVMM 250
           PV  T S+   H + LP+T  D+ SAS   A   L     V  TS++ T     +     
Sbjct: 477 PVTDTSSASTGHATPLPVT--DTSSASTGHATPLL-----VTDTSSASTGHTTPLHVTSP 529

Query: 251 RKASLKHCTPMQVLSPAPSSVPPCCLAASTS*RYPATRTLSA---YAPMGLATDPKL*SV 421
             AS  H TP+ V SP+ +S        S +   P T T SA   +A   L TD    S 
Sbjct: 530 SSASTGHATPLPVTSPSSAS-------TSHATSLPVTDTSSASTGHATPLLVTDTSSAST 582

Query: 422 E*YLSPNTSEMMAKSSGHCAP 484
                   ++  + S+GH  P
Sbjct: 583 GHATPLLVTDTSSASTGHATP 603



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>PHT19_ARATH (Q9S735) Inorganic phosphate transporter 1-9 (AtPht1;9) (H(+)/Pi|
           cotransporter)
          Length = 532

 Score = 33.5 bits (75), Expect = 0.43
 Identities = 28/91 (30%), Positives = 43/91 (47%)
 Frame = -1

Query: 462 FAIISEVFGLKYYSTLYNFGSVASPIGAYALNVRVAGYLYDVEAARQHGGTLDGAGDKTC 283
           F I +E+F  ++ ST +     A   GA    V   G+L+   A R H    DG  D   
Sbjct: 425 FIIPAELFPARFRSTCHGISGAAGKFGAI---VGTVGFLW---ATRHHEE--DGFPD--- 473

Query: 282 IGVQCFKLAFLIITAVTVAGALVSLVLVWRT 190
             V+  ++AFLI+  V +AG +V+ +    T
Sbjct: 474 --VKRVRIAFLILGGVCIAGMIVTYLFTRET 502



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>HUNB_DROLI (O46244) Protein hunchback (Fragments)|
          Length = 198

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +2

Query: 116 LPLTALDSPSASLNLA*MSLR*NLRVRQTSTSETSAPATVTAVMMRKASLKHCTPMQVLS 295
           L L  L +P  S+ LA      NLR   T+T+ T+ PA          +L+    +Q L+
Sbjct: 106 LMLPGLPNPMQSIMLA------NLRPSPTTTTTTTTPAAAPTTTAATIALQANDKLQALT 159

Query: 296 PAPSSVPP 319
           P     PP
Sbjct: 160 PPMDVTPP 167



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>HUNB_DRODS (O46240) Protein hunchback (Fragments)|
          Length = 198

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +2

Query: 116 LPLTALDSPSASLNLA*MSLR*NLRVRQTSTSETSAPATVTAVMMRKASLKHCTPMQVLS 295
           L L  L +P  S+ LA      NLR   T+T+ T+ PA          +L+    +Q L+
Sbjct: 106 LMLPGLPNPMQSIMLA------NLRPSPTATTTTTTPAAAPTTTAAAIALQANDKLQALT 159

Query: 296 PAPSSVPP 319
           P     PP
Sbjct: 160 PPMDVTPP 167



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>YM30_YEAST (Q03795) Hypothetical 60.0 kDa protein in IMP1-HLJ1 intergenic|
           region
          Length = 547

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 29/117 (24%), Positives = 53/117 (45%)
 Frame = -1

Query: 525 QSLYAASVVIGFCFGAQWPLLFAIISEVFGLKYYSTLYNFGSVASPIGAYALNVRVAGYL 346
           +++   S + G+ FG  +    +I+++ FG   YSTL+    V +  G ++++V      
Sbjct: 434 KNISVCSAIFGYSFGVLFGTFPSIVADRFGTNGYSTLW---GVLTTGGVFSVSVFTDILG 490

Query: 345 YDVEAARQHGGTLDGAGDKTCIGVQCFKLAFLIITAVTVAGALVSLVLVWRTRKFYR 175
            D +A   + G  DG   K   GV C+   F++         L  L ++  T  +YR
Sbjct: 491 RDFKA---NTGDDDGNCKK---GVLCYSYTFMVTKYCAAFNLLFVLGIIGYT--YYR 539



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>ATL2F_ARATH (O64762) Putative RING-H2 finger protein ATL2F|
          Length = 302

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
 Frame = -1

Query: 276 VQCFKLAFLIITAVTVAGALVSLVLV---WRTRKFYRSDIYAKFRDADGES----SAVNG 118
           ++   L  L+IT +  A  +V L  V   W +R+FY  +    F D+D ES    +AV G
Sbjct: 8   IKASDLTLLVITIILFAIFIVGLASVCFRWTSRQFYSQESINPFTDSDVESRTSITAVRG 67

Query: 117 RKE 109
             E
Sbjct: 68  LDE 70



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>PHT18_ARATH (Q9SYQ1) Inorganic phosphate transporter 1-8 (AtPht1;8) (H(+)/Pi|
           cotransporter)
          Length = 534

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
 Frame = -1

Query: 504 VVIGFCFGAQWPLLFAIISEVFGLKYYSTLYNFGSVASPIGAYALNVRVAGYLYDVEAAR 325
           +V  FC        F I +E F  ++ ST +     A  +GA    V   G+L+  +   
Sbjct: 401 LVFFFCNFGPNTTTFIIPAEHFPARFRSTCHGISGAAGKLGAI---VGTVGFLWATKKME 457

Query: 324 QHGGTLDGAGDKTCI--GVQCFKLAFLIITAVTVAGALVS 211
                   + DK  I   V   ++AFLI+  V +AG LV+
Sbjct: 458 --------SDDKNQIYPEVNRMRIAFLILGGVCIAGILVT 489



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>MAZ_MOUSE (P56671) Myc-associated zinc finger protein (MAZI) (Purine-binding|
           transcription factor) (Pur-1)
          Length = 477

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
 Frame = +2

Query: 68  PPVDRT*SSQPLHYSFLPLTALDSPSASLNLA*MSLR*NLRVRQTSTSETSAPATVTAVM 247
           PP  +  +++PL    LP+ A    SA+   A  +         T+    +A +TV    
Sbjct: 70  PPTPQAPAAEPLQVDLLPVLAAAQESAAAAAAAAAAA---AAVVTAPPAPAAASTVDTAA 126

Query: 248 MRKASLKHCTPMQVLSPAPSSVPPCC---LAASTS*RYPATRTLSAYAPMGLATDPK 409
           +++       P  V +PA  + PP     +AA+ +    A  +  A AP+    + K
Sbjct: 127 LKQPPAPPPPPPAVSAPAAEAAPPAAAATIAAAAATAVVAPTSTVAVAPVASVLEKK 183



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>MAZ_MESAU (P56670) Myc-associated zinc finger protein (MAZI) (Purine-binding|
           transcription factor) (Pur-1) (Fragment)
          Length = 331

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
 Frame = +2

Query: 68  PPVDRT*SSQPLHYSFLPLTALDSPSASLNLA*MSLR*NLRVRQTSTSETSAPATVTAVM 247
           PP  +  +++PL    LP+ A    SA+   A  +         T+    +A +TV    
Sbjct: 57  PPTPQAPAAEPLQVDLLPVLAAAQESAAAAAAAAAAA---AAVVTAPPAPAAASTVDTAA 113

Query: 248 MRKASLKHCTPMQVLSPAPSSVPPCC---LAASTS*RYPATRTLSAYAPMGLATDPK 409
           +++       P  V +PA  + PP     +AA+ +    A  +  A AP+    + K
Sbjct: 114 LKQPPAPPPPPPAVSAPAAEAAPPAAAATIAAAAATAVVAPTSTVAVAPVASVLEKK 170



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>MAZ_HUMAN (P56270) Myc-associated zinc finger protein (MAZI) (Purine-binding|
           transcription factor) (Pur-1) (ZF87) (ZIF87)
          Length = 477

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
 Frame = +2

Query: 68  PPVDRT*SSQPLHYSFLPLTALDSPSASLNLA*MSLR*NLRVRQTSTSETSAPATVTAVM 247
           PP  +  +++PL    LP+ A    SA+   A  +          +    +A +TV    
Sbjct: 70  PPTPQAPAAEPLQVDLLPVLAAAQESAAAAAAAAAA---AAAVAAAPPAPAAASTVDTAA 126

Query: 248 MRKASLKHCTPMQVLSPAPSSVPP---CCLAASTS*RYPATRTLSAYAPMGLATDPK 409
           +++       P  V +PA  + PP     +AA+ +    A  +  A AP+  A + K
Sbjct: 127 LKQPPAPPPPPPPVSAPAAEAAPPASAATIAAAAATAVVAPTSTVAVAPVASALEKK 183



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>PLSB_CUCSA (Q39639) Glycerol-3-phosphate acyltransferase, chloroplast|
           precursor (EC 2.3.1.15) (GPAT)
          Length = 470

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
 Frame = +2

Query: 293 SPAPSSVPPCCLAASTS*RYP----------ATRTLSAYAPMGLA-TDPKL*SVE*YLSP 439
           S  PSS+PP  L+ S S  +           ++ +L  + P+ L  T PKL S   +L  
Sbjct: 15  SSVPSSLPPFSLSPSISLSFSRVSLPPSSSSSSSSLKLFLPLSLHFTPPKLSSPHSFLRF 74

Query: 440 NTSEMMAKSSGHCAPKQNPMTTDAA*SD 523
           + S  MA+          P TTD   +D
Sbjct: 75  SASRAMAELIQDKESAHTPSTTDVTRND 102



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>OCLN_PONPY (Q5RFS5) Occludin|
          Length = 522

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 25/87 (28%), Positives = 33/87 (37%)
 Frame = -1

Query: 426 YSTLYNFGSVASPIGAYALNVRVAGYLYDVEAARQHGGTLDGAGDKTCIGVQCFKLAFLI 247
           Y T    GS+  P G        +GY Y       +GG  D    K   G      AF  
Sbjct: 93  YGTSLLGGSIGYPYGGSGFGSYGSGYGYSYGYGYGYGGYTDPRAAK---GFMLAMAAFCF 149

Query: 246 ITAVTVAGALVSLVLVWRTRKFYRSDI 166
           I A+ +    V    + RTR++Y S I
Sbjct: 150 IAALVIFVTSVIRSEMSRTRRYYLSVI 176



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>OCLN_HUMAN (Q16625) Occludin|
          Length = 522

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 26/87 (29%), Positives = 33/87 (37%)
 Frame = -1

Query: 426 YSTLYNFGSVASPIGAYALNVRVAGYLYDVEAARQHGGTLDGAGDKTCIGVQCFKLAFLI 247
           Y T    GSV  P G        +GY Y       +GG  D    K   G      AF  
Sbjct: 93  YGTSLLGGSVGYPYGGSGFGSYGSGYGYGYGYGYGYGGYTDPRAAK---GFMLAMAAFCF 149

Query: 246 ITAVTVAGALVSLVLVWRTRKFYRSDI 166
           I A+ +    V    + RTR++Y S I
Sbjct: 150 IAALVIFVTSVIRSEMSRTRRYYLSVI 176



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>EDG1_RAT (P48303) Sphingosine 1-phosphate receptor Edg-1 (Sphingosine|
           1-phosphate receptor 1) (S1P1)
          Length = 383

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -1

Query: 279 GVQCFKLAFLIITAVTVAGALVSLVLVWRTRKFYRSDIY 163
           G++   + F++I  + +   +  L+ +W+T+KF+R   Y
Sbjct: 45  GIKLTSVVFILICCLIILENIFVLLTIWKTKKFHRPMYY 83



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>HAK8_ORYSA (Q8VXB5) Putative potassium transporter 8 (OsHAK8)|
          Length = 793

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -1

Query: 549 FLIAFGVPQSLYAASVVIGFCFGAQWPLLFAI-ISEVFGLKYYSTLYNF 406
           FL+ FG  ++LY ++ +I F  GA  P+L A+ +  V  + +Y+T+  +
Sbjct: 455 FLLFFGSVEALYFSASLIKFLEGAWLPILLALFLMAVMLVWHYTTIKKY 503


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,697,375
Number of Sequences: 219361
Number of extensions: 976837
Number of successful extensions: 3941
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3931
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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