>TOP2A_RAT (P41516) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase|
            II, alpha isozyme)
          Length = 1526

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 13/136 (9%)
 Frame = -1

Query: 573  RDMTTARYKEYGIPVDWLSDSGKVGKIKLASVQLARKYMERVTSELDALQGTDKEPNREF 394
            RD    R K YG+  +WL   G +G         AR  +E++  ++      + +P +E 
Sbjct: 1018 RDFFELRLKYYGLRKEWLL--GMLGAESSKLNNQARFILEKIDGKIVI----ENKPKKEL 1071

Query: 393  LLLQGVRFAFRVHQFAGGFDADSMKVFEELRSKM-------------SSTQAPAPPTSDT 253
            + +   R          G+D+D +K ++E + K+             S + +PA  +  T
Sbjct: 1072 IKVLIQR----------GYDSDPVKAWKEAQQKVPEEEENEENEESESESTSPAAESGPT 1121

Query: 252  *QGLIRIPLWFIRRAR 205
               L+ +PLW++ + +
Sbjct: 1122 FNYLLDMPLWYLTKEK 1137

>TOP2A_MOUSE (Q01320) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase|
            II, alpha isozyme)
          Length = 1528

 Score = 33.9 bits (76), Expect = 0.43
 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 12/135 (8%)
 Frame = -1

Query: 573  RDMTTARYKEYGIPVDWLSDSGKVGKIKLASVQLARKYMERVTSELDALQGTDKEPNREF 394
            RD    R K YG+  +WL   G +G         AR  +E++  ++      + +P +E 
Sbjct: 1019 RDFFELRLKYYGLRKEWL--LGMLGAESSKLNNQARFILEKIDGKI----VIENKPKKEL 1072

Query: 393  LLLQGVRFAFRVHQFAGGFDADSMKVFEELRSKM------------SSTQAPAPPTSDT* 250
            + +   R          G+D+D +K ++E + K+            +ST   A     T 
Sbjct: 1073 IKVLIQR----------GYDSDPVKAWKEAQQKVPDEEENEESDTETSTSDSAAEAGPTF 1122

Query: 249  QGLIRIPLWFIRRAR 205
              L+ +PLW++ + +
Sbjct: 1123 NYLLDMPLWYLTKEK 1137

>PERI_MOUSE (P15331) Peripherin|
          Length = 475

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 19/57 (33%), Positives = 35/57 (61%)
 Frame = -1

Query: 471 ARKYMERVTSELDALQGTDKEPNREFLLLQGVRFAFRVHQFAGGFDADSMKVFEELR 301
           +R+ ++ +T E+D L+GT++   R+   L+  +FA      AGG+ A + ++ EELR
Sbjct: 319 SRRQIQSLTCEVDGLRGTNEALLRQLRELE-EQFALE----AGGYQAGAARLEEELR 370

>PERI_HUMAN (P41219) Peripherin|
          Length = 471

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 19/57 (33%), Positives = 35/57 (61%)
 Frame = -1

Query: 471 ARKYMERVTSELDALQGTDKEPNREFLLLQGVRFAFRVHQFAGGFDADSMKVFEELR 301
           +R+ ++ +T E+D L+GT++   R+   L+  +FA      AGG+ A + ++ EELR
Sbjct: 315 SRRQIQSLTCEVDGLRGTNEALLRQLRELE-EQFALE----AGGYQAGAARLEEELR 366

>PERI_RAT (P21807) Peripherin|
          Length = 468

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 19/57 (33%), Positives = 35/57 (61%)
 Frame = -1

Query: 471 ARKYMERVTSELDALQGTDKEPNREFLLLQGVRFAFRVHQFAGGFDADSMKVFEELR 301
           +R+ ++ +T E+D L+GT++   R+   L+  +FA      AGG+ A + ++ EELR
Sbjct: 312 SRRQIQSLTCEVDGLRGTNEALLRQLRELE-EQFALE----AGGYQAGAARLEEELR 363

>RBM10_RAT (P70501) RNA-binding protein 10 (RNA-binding motif protein 10)|
           (S1-1 protein)
          Length = 852

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +1

Query: 211 PPNEPEWNPDESLLCVRCRRSGCLRAAHLASQLLEDFHAVCVEASSKLMNTEGKSDALEK 390
           P  E +    + L C+ CRR    + A +  Q L   H   +E   +   +E + +ALEK
Sbjct: 669 PEREEKLTDWQKLACLLCRRQFPSKEALIRHQQLSGLHKQNLEIHRRAHLSENELEALEK 728

Query: 391 QEL 399
            ++
Sbjct: 729 NDM 731

>TOP2A_PIG (O46374) DNA topoisomerase 2-alpha (EC 5.99.1.3) (DNA topoisomerase|
            II, alpha isozyme)
          Length = 1533

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 17/140 (12%)
 Frame = -1

Query: 573  RDMTTARYKEYGIPVDWLSDSGKVGKIKLASVQLARKYMERVTSELDALQGTDKEPNREF 394
            RD    R K YG+  +WL   G +G         AR  +E++  ++      + +P +E 
Sbjct: 1020 RDFFELRLKYYGLRKEWL--LGMLGAESAKLNNQARFILEKIDGKII----IENKPKKEL 1073

Query: 393  LLLQGVRFAFRVHQFAGGFDADSMKVFEELRSKM-----------------SSTQAPAPP 265
            + +   R          G+D+D +K ++E + K+                 S + A + P
Sbjct: 1074 IKVLIQR----------GYDSDPVKAWKEAQQKVPDEEENEESDNEKEADKSDSVADSGP 1123

Query: 264  TSDT*QGLIRIPLWFIRRAR 205
            T +    L+ +PLW++ + +
Sbjct: 1124 TFNY---LLDMPLWYLTKEK 1140

>RBM10_HUMAN (P98175) RNA-binding protein 10 (RNA-binding motif protein 10)|
           (DXS8237E)
          Length = 929

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +1

Query: 211 PPNEPEWNPDESLLCVRCRRSGCLRAAHLASQLLEDFHAVCVEASSKLMNTEGKSDALEK 390
           P  E +    + L C+ CRR    + A +  Q L   H   +E   +   +E + +ALEK
Sbjct: 746 PEREEKLTDWQKLACLLCRRQFPSKEALIRHQQLSGLHKQNLEIHRRAHLSENELEALEK 805

Query: 391 QEL 399
            ++
Sbjct: 806 NDM 808

>GRI22_VITVI (Q9M4H4) Ripening-related protein grip22 precursor|
          Length = 220

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 525 WLSDSGKVGKIKLASVQLARKYMERVTSELDALQGTDKE 409
           W +   + GK+   + Q  R  + +V  E D++ G DKE
Sbjct: 144 WYNGGSRCGKMIRITAQNGRSVLAKVVDECDSMHGCDKE 182


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,029,784
Number of Sequences: 219361
Number of extensions: 1859335
Number of successful extensions: 5860
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5856
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)