ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21f23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK099132.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 1e-57
2dbj|AK072914.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 1e-57
3dbj|AK062121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 232 1e-57
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 100 1e-17
6emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa... 100 1e-17
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 92 3e-15
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 92 3e-15
9emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa... 92 3e-15
10emb|BX000491.1|CNS08CDH Oryza sativa chromosome 12, . BAC OSJNBb... 92 3e-15
11gb|AY347840.1| Malus x domestica clone 13-3 putative actin-bindi... 62 2e-06
12ref|NM_113468.3| Arabidopsis thaliana CHUP1 (CHLOROPLAST UNUSUAL... 52 0.002
13dbj|AB087408.1| Arabidopsis thaliana CHUP1 mRNA for actin bindin... 52 0.002
14dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.036
15dbj|AP005768.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.036
16dbj|AP005255.4| Oryza sativa (japonica cultivar-group) genomic D... 48 0.036
17gb|AC090127.11| Mus musculus chromosome 6, clone RP23-128D23, co... 46 0.14
18gb|AC090563.17| Mus musculus chromosome 6, clone RP23-451F7, com... 46 0.14
19ref|NM_117970.3| Arabidopsis thaliana unknown protein AT4G18570 ... 44 0.57
20gb|CP000302.1| Shewanella denitrificans OS217, complete genome 44 0.57
21gb|AY128285.1| Arabidopsis thaliana AT4g18560/F28J12_220 mRNA, c... 44 0.57
22emb|BX826449.1|CNS0A49I Arabidopsis thaliana Full-length cDNA Co... 44 0.57
23gb|BT004523.1| Arabidopsis thaliana At4g18560/F28J12_220 gene, c... 44 0.57
24gb|AF003529.2| Homo sapiens glypican 3 (GPC3) gene, partial cds ... 44 0.57
25dbj|AP001313.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 44 0.57
26emb|Z82203.1|HS360E18 Human DNA sequence from clone RP3-360E18 o... 42 2.2
27emb|AL583822.6| Human DNA sequence from clone RP11-117M4 on chro... 42 2.2
28gb|AC105180.8| Homo sapiens chromosome 8, clone RP11-345J1, comp... 42 2.2
29gb|AC120193.4| Homo sapiens chromosome 8, clone RP11-10H17, comp... 42 2.2
30gb|AC068647.10| Homo sapiens 3 BAC RP11-64D22 (Roswell Park Canc... 42 2.2
31gb|AC011132.15| Homo sapiens chromosome 8, clone RP11-360M9, com... 42 2.2
32gb|AC022401.4| Homo sapiens chromosome 10 clone RP11-68P3, compl... 42 2.2
33gb|AC022534.9| Homo sapiens chromosome 10 clone RP11-316G7, comp... 42 2.2
34gb|AC027670.6| Homo sapiens chromosome 10 clone RP11-176H12, com... 42 2.2
35gb|AC116026.1| Homo sapiens 3 BAC RP11-3F11 (Roswell Park Cancer... 42 2.2
36gb|AC015911.8| Homo sapiens chromosome 17, clone RP11-1094M14, c... 42 2.2
37gb|AC010746.8| Homo sapiens BAC clone RP11-550E21 from 2, comple... 42 2.2
38gb|AC024958.8| Homo sapiens, clone RP11-561E1, complete sequence 42 2.2
39gb|AC157480.3| Pan troglodytes BAC clone CH251-394P5 from chromo... 42 2.2
40gb|AC159215.2| Pan troglodytes BAC clone CH251-458G5 from chromo... 42 2.2
41gb|AC159904.2| Pan troglodytes BAC clone CH251-488L1 from chromo... 42 2.2
42dbj|AP001830.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.2
43emb|CT005243.3| Pan troglodytes chromosome X clone RP43-008I08 m... 42 2.2
44gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 8.8
45gb|AC161930.7| Mus musculus chromosome 7, clone RP23-157P17, com... 40 8.8
46gb|AC123840.4| Mus musculus BAC clone RP23-399K5 from chromosome... 40 8.8
47gb|AC141890.3| Mus musculus BAC clone RP23-410K18 from chromosom... 40 8.8
48gb|AC129017.4| Mus musculus BAC clone RP24-414A24 from chromosom... 40 8.8
49gb|AC127299.3| Mus musculus BAC clone RP23-264I11 from 7, comple... 40 8.8
50gb|AC145772.1| Pan troglodytes BAC clone RP43-14J20 from 7, comp... 40 8.8
51emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, ... 40 8.8
52emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete g... 40 8.8
53gb|AY960140.1| Yellow fever virus strain ArB28153 polyprotein ge... 40 8.8
54emb|BX640453.23| Zebrafish DNA sequence from clone DKEY-9L5 in l... 40 8.8
55emb|AL773519.5| Mouse DNA sequence from clone RP23-42C15 on chro... 40 8.8
56emb|BX248236.16| Zebrafish DNA sequence from clone CH211-207B24 ... 40 8.8
57dbj|AK012637.1| Mus musculus 10, 11 days embryo whole body cDNA,... 40 8.8
58gb|AC006435.7|AC006435 Homo sapiens chromosome 17, clone RP5-59D... 40 8.8
59dbj|AP001877.5| Homo sapiens genomic DNA, chromosome 11 clone:CT... 40 8.8
60dbj|AP002833.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 8.8
61gb|AC118196.12| Mus musculus chromosome 1, clone RP23-354J2, com... 40 8.8
62emb|AL935316.7| Zebrafish DNA sequence from clone CH211-239C9 in... 40 8.8
63gb|AY839634.1| Yellow fever virus strain HB1782/CAR86 envelope p... 40 8.8
64gb|U23571.1|YFU23571 Yellow fever virus isolate ArB8883/C. Afric... 40 8.8
65gb|AC134670.3| Homo sapiens chromosome 17, clone CTD-2283G11, co... 40 8.8 
>dbj|AK099132.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023051M04, full
            insert sequence
          Length = 3065

 Score =  232 bits (117), Expect = 1e-57
 Identities = 297/357 (83%)
 Strand = Plus / Minus

                                                                        
Query: 292  catcttgcttctcagctcctcgaagactttcatgctgtctgcgtcgaagcctccagcaaa 351
            |||||||||||| ||||| || ||  | |||||||| ||  |||| |||||||| |||||
Sbjct: 2845 catcttgcttcttagctcttcaaacgccttcatgctttcctcgtcaaagcctccggcaaa 2786

                                                                        
Query: 352  ctgatgaacacggaaggcaaatctgacgccctggagaagcaagaactccctgttgggctc 411
            ||||||||| ||||| |||||||| || ||||| |||||||||||||| |||||||||||
Sbjct: 2785 ctgatgaactcggaaagcaaatctcacaccctgaagaagcaagaactctctgttgggctc 2726

                                                                        
Query: 412  tttgtccgtgccttgcaacgcgtcgagctccgacgtgaccctctccatgtacttccttgc 471
            ||| || ||||||||||| || || ||||| |  |  ||||| | ||| |||||| | ||
Sbjct: 2725 tttctcggtgccttgcaaggcatctagctctgtggcaaccctattcatatacttcttcgc 2666

                                                                        
Query: 472  cagctgaactgacgcgagtttgatcttgccaacttttccagaatcagataaccaatcaac 531
            ||||||||| || || | ||||||||||||||||   || |||||||| | |||||| ||
Sbjct: 2665 cagctgaacagatgccaatttgatcttgccaactaccccggaatcagacagccaatccac 2606

                                                                        
Query: 532  tggtattccatactccttgtaccgtgcggtggtcatgtctcttgtacgaagaagtgcgta 591
             ||||||||||||||| |||| ||||   ||| ||||||||| |||||||| || || ||
Sbjct: 2605 cggtattccatactccctgtagcgtgatatggccatgtctctagtacgaagtagcgcata 2546

                                                                     
Query: 592  aacactctgctccactttctcaagcaacgaatacatcctcttcaaagcttcttcaca 648
            |||||||||||||||| | |||||||| ||||||||| |||| | ||||||||||||
Sbjct: 2545 aacactctgctccactgtttcaagcaaggaatacatcttcttgagagcttcttcaca 2489
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>dbj|AK072914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150I16, full
            insert sequence
          Length = 3183

 Score =  232 bits (117), Expect = 1e-57
 Identities = 297/357 (83%)
 Strand = Plus / Minus

                                                                        
Query: 292  catcttgcttctcagctcctcgaagactttcatgctgtctgcgtcgaagcctccagcaaa 351
            |||||||||||| ||||| || ||  | |||||||| ||  |||| |||||||| |||||
Sbjct: 2960 catcttgcttcttagctcttcaaacgccttcatgctttcctcgtcaaagcctccggcaaa 2901

                                                                        
Query: 352  ctgatgaacacggaaggcaaatctgacgccctggagaagcaagaactccctgttgggctc 411
            ||||||||| ||||| |||||||| || ||||| |||||||||||||| |||||||||||
Sbjct: 2900 ctgatgaactcggaaagcaaatctcacaccctgaagaagcaagaactctctgttgggctc 2841

                                                                        
Query: 412  tttgtccgtgccttgcaacgcgtcgagctccgacgtgaccctctccatgtacttccttgc 471
            ||| || ||||||||||| || || ||||| |  |  ||||| | ||| |||||| | ||
Sbjct: 2840 tttctcggtgccttgcaaggcatctagctctgtggcaaccctattcatatacttcttcgc 2781

                                                                        
Query: 472  cagctgaactgacgcgagtttgatcttgccaacttttccagaatcagataaccaatcaac 531
            ||||||||| || || | ||||||||||||||||   || |||||||| | |||||| ||
Sbjct: 2780 cagctgaacagatgccaatttgatcttgccaactaccccggaatcagacagccaatccac 2721

                                                                        
Query: 532  tggtattccatactccttgtaccgtgcggtggtcatgtctcttgtacgaagaagtgcgta 591
             ||||||||||||||| |||| ||||   ||| ||||||||| |||||||| || || ||
Sbjct: 2720 cggtattccatactccctgtagcgtgatatggccatgtctctagtacgaagtagcgcata 2661

                                                                     
Query: 592  aacactctgctccactttctcaagcaacgaatacatcctcttcaaagcttcttcaca 648
            |||||||||||||||| | |||||||| ||||||||| |||| | ||||||||||||
Sbjct: 2660 aacactctgctccactgtttcaagcaaggaatacatcttcttgagagcttcttcaca 2604
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>dbj|AK062121.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-D01, full
            insert sequence
          Length = 1478

 Score =  232 bits (117), Expect = 1e-57
 Identities = 297/357 (83%)
 Strand = Plus / Minus

                                                                        
Query: 292  catcttgcttctcagctcctcgaagactttcatgctgtctgcgtcgaagcctccagcaaa 351
            |||||||||||| ||||| || ||  | |||||||| ||  |||| |||||||| |||||
Sbjct: 1258 catcttgcttcttagctcttcaaacgccttcatgctttcctcgtcaaagcctccggcaaa 1199

                                                                        
Query: 352  ctgatgaacacggaaggcaaatctgacgccctggagaagcaagaactccctgttgggctc 411
            ||||||||| ||||| |||||||| || ||||| |||||||||||||| |||||||||||
Sbjct: 1198 ctgatgaactcggaaagcaaatctcacaccctgaagaagcaagaactctctgttgggctc 1139

                                                                        
Query: 412  tttgtccgtgccttgcaacgcgtcgagctccgacgtgaccctctccatgtacttccttgc 471
            ||| || ||||||||||| || || ||||| |  |  ||||| | ||| |||||| | ||
Sbjct: 1138 tttctcggtgccttgcaaggcatctagctctgtggcaaccctattcatatacttcttcgc 1079

                                                                        
Query: 472  cagctgaactgacgcgagtttgatcttgccaacttttccagaatcagataaccaatcaac 531
            ||||||||| || || | ||||||||||||||||   || |||||||| | |||||| ||
Sbjct: 1078 cagctgaacagatgccaatttgatcttgccaactaccccggaatcagacagccaatccac 1019

                                                                        
Query: 532  tggtattccatactccttgtaccgtgcggtggtcatgtctcttgtacgaagaagtgcgta 591
             ||||||||||||||| |||| ||||   ||| ||||||||| |||||||| || || ||
Sbjct: 1018 cggtattccatactccctgtagcgtgatatggccatgtctctagtacgaagtagcgcata 959

                                                                     
Query: 592  aacactctgctccactttctcaagcaacgaatacatcctcttcaaagcttcttcaca 648
            |||||||||||||||| | |||||||| ||||||||| |||| | ||||||||||||
Sbjct: 958  aacactctgctccactgtttcaagcaaggaatacatcttcttgagagcttcttcaca 902
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 122/146 (83%)
 Strand = Plus / Plus

                                                                          
Query: 352    ctgatgaacacggaaggcaaatctgacgccctggagaagcaagaactccctgttgggctc 411
              ||||||||| ||||| |||||||| || ||||| |||||||||||||| |||||||||||
Sbjct: 256287 ctgatgaactcggaaagcaaatctcacaccctgaagaagcaagaactctctgttgggctc 256346

                                                                          
Query: 412    tttgtccgtgccttgcaacgcgtcgagctccgacgtgaccctctccatgtacttccttgc 471
              ||| || ||||||||||| || || ||||| |  |  ||||||| ||| |||||| | ||
Sbjct: 256347 tttctcggtgccttgcaaggcatcaagctctgtggcaaccctcttcatatacttcttcgc 256406

                                        
Query: 472    cagctgaactgacgcgagtttgatct 497
              ||||||||| || || | ||||||||
Sbjct: 256407 cagctgaacagatgccaatttgatct 256432



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 71/85 (83%)
 Strand = Plus / Plus

                                                                          
Query: 523    ccaatcaactggtattccatactccttgtaccgtgcggtggtcatgtctcttgtacgaag 582
              |||||| || |||| ||| |||||| |||| ||||   ||| ||||||||| ||||||||
Sbjct: 256548 ccaatccaccggtagtccgtactccctgtagcgtgatatggccatgtctctagtacgaag 256607

                                       
Query: 583    aagtgcgtaaacactctgctccact 607
               || || ||||||||||||||||||
Sbjct: 256608 tagcgcataaacactctgctccact 256632



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                    
Query: 611    tcaagcaacgaatacatcctcttcaaagcttcttcaca 648
              |||||||| ||||||||| |||| | ||||||||||||
Sbjct: 256780 tcaagcaaggaatacatcttcttgagagcttcttcaca 256817
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 122/146 (83%)
 Strand = Plus / Plus

                                                                          
Query: 352    ctgatgaacacggaaggcaaatctgacgccctggagaagcaagaactccctgttgggctc 411
              ||||||||| ||||| |||||||| || ||||| |||||||||||||| |||||||||||
Sbjct: 256287 ctgatgaactcggaaagcaaatctcacaccctgaagaagcaagaactctctgttgggctc 256346

                                                                          
Query: 412    tttgtccgtgccttgcaacgcgtcgagctccgacgtgaccctctccatgtacttccttgc 471
              ||| || ||||||||||| || || ||||| |  |  ||||||| ||| |||||| | ||
Sbjct: 256347 tttctcggtgccttgcaaggcatcaagctctgtggcaaccctcttcatatacttcttcgc 256406

                                        
Query: 472    cagctgaactgacgcgagtttgatct 497
              ||||||||| || || | ||||||||
Sbjct: 256407 cagctgaacagatgccaatttgatct 256432



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 71/85 (83%)
 Strand = Plus / Plus

                                                                          
Query: 523    ccaatcaactggtattccatactccttgtaccgtgcggtggtcatgtctcttgtacgaag 582
              |||||| || |||| ||| |||||| |||| ||||   ||| ||||||||| ||||||||
Sbjct: 256548 ccaatccaccggtagtccgtactccctgtagcgtgatatggccatgtctctagtacgaag 256607

                                       
Query: 583    aagtgcgtaaacactctgctccact 607
               || || ||||||||||||||||||
Sbjct: 256608 tagcgcataaacactctgctccact 256632



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                    
Query: 611    tcaagcaacgaatacatcctcttcaaagcttcttcaca 648
              |||||||| ||||||||| |||| | ||||||||||||
Sbjct: 256780 tcaagcaaggaatacatcttcttgagagcttcttcaca 256817
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>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 160673

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 122/146 (83%)
 Strand = Plus / Minus

                                                                         
Query: 352   ctgatgaacacggaaggcaaatctgacgccctggagaagcaagaactccctgttgggctc 411
             ||||||||| ||||| |||||||| || ||||| |||||||||||||| |||||||||||
Sbjct: 48706 ctgatgaactcggaaagcaaatctcacaccctgaagaagcaagaactctctgttgggctc 48647

                                                                         
Query: 412   tttgtccgtgccttgcaacgcgtcgagctccgacgtgaccctctccatgtacttccttgc 471
             ||| || ||||||||||| || || ||||| |  |  ||||||| ||| |||||| | ||
Sbjct: 48646 tttctcggtgccttgcaaggcatcaagctctgtggcaaccctcttcatatacttcttcgc 48587

                                       
Query: 472   cagctgaactgacgcgagtttgatct 497
             ||||||||| || || | ||||||||
Sbjct: 48586 cagctgaacagatgccaatttgatct 48561



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 71/85 (83%)
 Strand = Plus / Minus

                                                                         
Query: 523   ccaatcaactggtattccatactccttgtaccgtgcggtggtcatgtctcttgtacgaag 582
             |||||| || |||| ||| |||||| |||| ||||   ||| ||||||||| ||||||||
Sbjct: 48445 ccaatccaccggtagtccgtactccctgtagcgtgatatggccatgtctctagtacgaag 48386

                                      
Query: 583   aagtgcgtaaacactctgctccact 607
              || || ||||||||||||||||||
Sbjct: 48385 tagcgcataaacactctgctccact 48361



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 611   tcaagcaacgaatacatcctcttcaaagcttcttcaca 648
             |||||||| ||||||||| |||| | ||||||||||||
Sbjct: 48213 tcaagcaaggaatacatcttcttgagagcttcttcaca 48176
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 70/78 (89%)
 Strand = Plus / Plus

                                                                          
Query: 352    ctgatgaacacggaaggcaaatctgacgccctggagaagcaagaactccctgttgggctc 411
              ||||||||| ||||| |||||||| || ||||| |||||||||||||| |||||||||||
Sbjct: 274026 ctgatgaactcggaaagcaaatctcacaccctgaagaagcaagaactctctgttgggctc 274085

                                
Query: 412    tttgtccgtgccttgcaa 429
              ||| || |||||||||||
Sbjct: 274086 tttctcggtgccttgcaa 274103



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 82/96 (85%)
 Strand = Plus / Plus

                                                                          
Query: 512    gaatcagataaccaatcaactggtattccatactccttgtaccgtgcggtggtcatgtct 571
              |||||||| | |||||| || ||||||||||||||| |||| ||||   ||| |||||||
Sbjct: 274280 gaatcagacagccaatccaccggtattccatactccctgtagcgtgatatggccatgtct 274339

                                                  
Query: 572    cttgtacgaagaagtgcgtaaacactctgctccact 607
              || |||||||| || || ||||||||||||||||||
Sbjct: 274340 ctagtacgaagtagcgcataaacactctgctccact 274375



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                    
Query: 611    tcaagcaacgaatacatcctcttcaaagcttcttcaca 648
              |||||||| ||||||||| |||| | ||||||||||||
Sbjct: 274524 tcaagcaaggaatacatcttcttgagagcttcttcaca 274561
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 70/78 (89%)
 Strand = Plus / Plus

                                                                          
Query: 352    ctgatgaacacggaaggcaaatctgacgccctggagaagcaagaactccctgttgggctc 411
              ||||||||| ||||| |||||||| || ||||| |||||||||||||| |||||||||||
Sbjct: 274026 ctgatgaactcggaaagcaaatctcacaccctgaagaagcaagaactctctgttgggctc 274085

                                
Query: 412    tttgtccgtgccttgcaa 429
              ||| || |||||||||||
Sbjct: 274086 tttctcggtgccttgcaa 274103



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 82/96 (85%)
 Strand = Plus / Plus

                                                                          
Query: 512    gaatcagataaccaatcaactggtattccatactccttgtaccgtgcggtggtcatgtct 571
              |||||||| | |||||| || ||||||||||||||| |||| ||||   ||| |||||||
Sbjct: 274280 gaatcagacagccaatccaccggtattccatactccctgtagcgtgatatggccatgtct 274339

                                                  
Query: 572    cttgtacgaagaagtgcgtaaacactctgctccact 607
              || |||||||| || || ||||||||||||||||||
Sbjct: 274340 ctagtacgaagtagcgcataaacactctgctccact 274375



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                    
Query: 611    tcaagcaacgaatacatcctcttcaaagcttcttcaca 648
              |||||||| ||||||||| |||| | ||||||||||||
Sbjct: 274524 tcaagcaaggaatacatcttcttgagagcttcttcaca 274561
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>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 152222

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 70/78 (89%)
 Strand = Plus / Plus

                                                                        
Query: 352  ctgatgaacacggaaggcaaatctgacgccctggagaagcaagaactccctgttgggctc 411
            ||||||||| ||||| |||||||| || ||||| |||||||||||||| |||||||||||
Sbjct: 7077 ctgatgaactcggaaagcaaatctcacaccctgaagaagcaagaactctctgttgggctc 7136

                              
Query: 412  tttgtccgtgccttgcaa 429
            ||| || |||||||||||
Sbjct: 7137 tttctcggtgccttgcaa 7154



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 82/96 (85%)
 Strand = Plus / Plus

                                                                        
Query: 512  gaatcagataaccaatcaactggtattccatactccttgtaccgtgcggtggtcatgtct 571
            |||||||| | |||||| || ||||||||||||||| |||| ||||   ||| |||||||
Sbjct: 7331 gaatcagacagccaatccaccggtattccatactccctgtagcgtgatatggccatgtct 7390

                                                
Query: 572  cttgtacgaagaagtgcgtaaacactctgctccact 607
            || |||||||| || || ||||||||||||||||||
Sbjct: 7391 ctagtacgaagtagcgcataaacactctgctccact 7426



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 611  tcaagcaacgaatacatcctcttcaaagcttcttcaca 648
            |||||||| ||||||||| |||| | ||||||||||||
Sbjct: 7575 tcaagcaaggaatacatcttcttgagagcttcttcaca 7612
to top
>emb|BX000491.1|CNS08CDH Oryza sativa chromosome 12, . BAC OSJNBb0068K19 of library OSJNBb
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 96667

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 70/78 (89%)
 Strand = Plus / Minus

                                                                        
Query: 352  ctgatgaacacggaaggcaaatctgacgccctggagaagcaagaactccctgttgggctc 411
            ||||||||| ||||| |||||||| || ||||| |||||||||||||| |||||||||||
Sbjct: 1230 ctgatgaactcggaaagcaaatctcacaccctgaagaagcaagaactctctgttgggctc 1171

                              
Query: 412  tttgtccgtgccttgcaa 429
            ||| || |||||||||||
Sbjct: 1170 tttctcggtgccttgcaa 1153



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 82/96 (85%)
 Strand = Plus / Minus

                                                                       
Query: 512 gaatcagataaccaatcaactggtattccatactccttgtaccgtgcggtggtcatgtct 571
           |||||||| | |||||| || ||||||||||||||| |||| ||||   ||| |||||||
Sbjct: 976 gaatcagacagccaatccaccggtattccatactccctgtagcgtgatatggccatgtct 917

                                               
Query: 572 cttgtacgaagaagtgcgtaaacactctgctccact 607
           || |||||||| || || ||||||||||||||||||
Sbjct: 916 ctagtacgaagtagcgcataaacactctgctccact 881



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 611 tcaagcaacgaatacatcctcttcaaagcttcttcaca 648
           |||||||| ||||||||| |||| | ||||||||||||
Sbjct: 732 tcaagcaaggaatacatcttcttgagagcttcttcaca 695
to top
>gb|AY347840.1| Malus x domestica clone 13-3 putative actin-binding protein mRNA,
           partial cds
          Length = 387

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                          
Query: 320 ttcatgctgtctgcgtcgaagcctccagcaaactgatgaacacggaa 366
           |||||||| ||||| || ||||||||||||||||||||||| |||||
Sbjct: 260 ttcatgctctctgcatcaaagcctccagcaaactgatgaactcggaa 214
to top
>ref|NM_113468.3| Arabidopsis thaliana CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1)
            AT3G25690 (CHUP1) mRNA, complete cds
          Length = 3379

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 95/118 (80%)
 Strand = Plus / Minus

                                                                        
Query: 297  tgcttctcagctcctcgaagactttcatgctgtctgcgtcgaagcctccagcaaactgat 356
            ||||||| || ||||| ||  |||||||||| ||||| || || ||||||||||||||||
Sbjct: 3163 tgcttctaagttcctcaaatgctttcatgctctctgcatcaaaccctccagcaaactgat 3104

                                                                      
Query: 357  gaacacggaaggcaaatctgacgccctggagaagcaagaactccctgttgggctcttt 414
            | || |  || || || |  || || ||||||||||||||||| ||||| || |||||
Sbjct: 3103 ggactctaaacgcgaaacgaacaccttggagaagcaagaactctctgttcggatcttt 3046



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 509  ccagaatcagataaccaatcaactgg 534
            |||| |||||||||||||||||||||
Sbjct: 2951 ccagtatcagataaccaatcaactgg 2926
to top
>dbj|AB087408.1| Arabidopsis thaliana CHUP1 mRNA for actin binding protein, complete
            cds
          Length = 3320

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 95/118 (80%)
 Strand = Plus / Minus

                                                                        
Query: 297  tgcttctcagctcctcgaagactttcatgctgtctgcgtcgaagcctccagcaaactgat 356
            ||||||| || ||||| ||  |||||||||| ||||| || || ||||||||||||||||
Sbjct: 3163 tgcttctaagttcctcaaatgctttcatgctctctgcatcaaaccctccagcaaactgat 3104

                                                                      
Query: 357  gaacacggaaggcaaatctgacgccctggagaagcaagaactccctgttgggctcttt 414
            | || |  || || || |  || || ||||||||||||||||| ||||| || |||||
Sbjct: 3103 ggactctaaacgcgaaacgaacaccttggagaagcaagaactctctgttcggatcttt 3046



 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 509  ccagaatcagataaccaatcaactgg 534
            |||| |||||||||||||||||||||
Sbjct: 2951 ccagtatcagataaccaatcaactgg 2926
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                           
Query: 392     aagaactccctgttgggctctttgtccgtgccttgcaacgcgtc 435
               |||||||| ||| |||| |||||||| ||||||||||| |||||
Sbjct: 8692776 aagaactctctgctggggtctttgtcagtgccttgcaatgcgtc 8692733
to top
>dbj|AP005768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0039C01
          Length = 151054

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 392   aagaactccctgttgggctctttgtccgtgccttgcaacgcgtc 435
             |||||||| ||| |||| |||||||| ||||||||||| |||||
Sbjct: 51417 aagaactctctgctggggtctttgtcagtgccttgcaatgcgtc 51374
to top
>dbj|AP005255.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0087F05
          Length = 143908

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                          
Query: 392    aagaactccctgttgggctctttgtccgtgccttgcaacgcgtc 435
              |||||||| ||| |||| |||||||| ||||||||||| |||||
Sbjct: 106516 aagaactctctgctggggtctttgtcagtgccttgcaatgcgtc 106473
to top
>gb|AC090127.11| Mus musculus chromosome 6, clone RP23-128D23, complete sequence
          Length = 212404

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 25     actgtggttcactttttacaaac 47
              |||||||||||||||||||||||
Sbjct: 204268 actgtggttcactttttacaaac 204246
to top
>gb|AC090563.17| Mus musculus chromosome 6, clone RP23-451F7, complete sequence
          Length = 199986

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 25     actgtggttcactttttacaaac 47
              |||||||||||||||||||||||
Sbjct: 168871 actgtggttcactttttacaaac 168893
to top
>ref|NM_117970.3| Arabidopsis thaliana unknown protein AT4G18570 mRNA, complete cds
          Length = 2309

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 341  cctccagcaaactgatgaacacggaa 366
            ||||| ||||||||||||||||||||
Sbjct: 2029 cctccggcaaactgatgaacacggaa 2004
to top
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 23      ttactgtggttcactttttaca 44
               ||||||||||||||||||||||
Sbjct: 2556233 ttactgtggttcactttttaca 2556254
to top
>gb|AY128285.1| Arabidopsis thaliana AT4g18560/F28J12_220 mRNA, complete cds
          Length = 2134

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 341  cctccagcaaactgatgaacacggaa 366
            ||||| ||||||||||||||||||||
Sbjct: 1854 cctccggcaaactgatgaacacggaa 1829
to top
>emb|BX826449.1|CNS0A49I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB27ZF11 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 2022

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 341  cctccagcaaactgatgaacacggaa 366
            ||||| ||||||||||||||||||||
Sbjct: 1870 cctccggcaaactgatgaacacggaa 1845
to top
>gb|BT004523.1| Arabidopsis thaliana At4g18560/F28J12_220 gene, complete cds
          Length = 1929

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 341  cctccagcaaactgatgaacacggaa 366
            ||||| ||||||||||||||||||||
Sbjct: 1808 cctccggcaaactgatgaacacggaa 1783
to top
>gb|AF003529.2| Homo sapiens glypican 3 (GPC3) gene, partial cds and flanking repeat
             regions
          Length = 165658

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 162   ggaatttacagttctcttttgt 183
             ||||||||||||||||||||||
Sbjct: 36972 ggaatttacagttctcttttgt 36951
to top
>dbj|AP001313.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone:T5M7
          Length = 65177

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 509   ccagaatcagataaccaatcaactgg 534
             |||| |||||||||||||||||||||
Sbjct: 59141 ccagtatcagataaccaatcaactgg 59116



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                      
Query: 297   tgcttctcagctcctcgaagactttcatgctgtctgcgtcgaagcctccagcaaact 353
             ||||||| || ||||| ||  |||||||||| ||||| || || |||||||||||||
Sbjct: 59556 tgcttctaagttcctcaaatgctttcatgctctctgcatcaaaccctccagcaaact 59500



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 383   tggagaagcaagaactccctgttgggctcttt 414
             ||||||||||||||||| ||||| || |||||
Sbjct: 59374 tggagaagcaagaactctctgttcggatcttt 59343
to top
>emb|Z82203.1|HS360E18 Human DNA sequence from clone RP3-360E18 on chromosome Xq12-13 Contains
             part of the OPHN1 gene for oligophrenin 1 and three CpG
             islands, complete sequence
          Length = 131903

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 9     gtagtggtatctcattactgt 29
             |||||||||||||||||||||
Sbjct: 76182 gtagtggtatctcattactgt 76162
to top
>emb|AL583822.6| Human DNA sequence from clone RP11-117M4 on chromosome 6, complete
              sequence
          Length = 126614

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 240    tgagtccttgctatgtgtcagatgt 264
              ||||||||||||||||| |||||||
Sbjct: 111891 tgagtccttgctatgtgccagatgt 111915
to top
>gb|AC105180.8| Homo sapiens chromosome 8, clone RP11-345J1, complete sequence
          Length = 174617

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 446    gtgaccctctccatgtacttc 466
              |||||||||||||||||||||
Sbjct: 109291 gtgaccctctccatgtacttc 109271
to top
>gb|AC120193.4| Homo sapiens chromosome 8, clone RP11-10H17, complete sequence
          Length = 174556

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 9     gtagtggtatctcattactgt 29
             |||||||||||||||||||||
Sbjct: 73606 gtagtggtatctcattactgt 73626
to top
>gb|AC068647.10| Homo sapiens 3 BAC RP11-64D22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 132745

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 291   tcatcttgcttctcagctcct 311
             |||||||||||||||||||||
Sbjct: 70067 tcatcttgcttctcagctcct 70087
to top
>gb|AC011132.15| Homo sapiens chromosome 8, clone RP11-360M9, complete sequence
          Length = 216334

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 513   aatcagataaccaatcaactg 533
             |||||||||||||||||||||
Sbjct: 88805 aatcagataaccaatcaactg 88825
to top
>gb|AC022401.4| Homo sapiens chromosome 10 clone RP11-68P3, complete sequence
          Length = 172593

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 9      gtagtggtatctcattactgt 29
              |||||||||||||||||||||
Sbjct: 134756 gtagtggtatctcattactgt 134736
to top
>gb|AC022534.9| Homo sapiens chromosome 10 clone RP11-316G7, complete sequence
          Length = 147715

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 9     gtagtggtatctcattactgt 29
             |||||||||||||||||||||
Sbjct: 28064 gtagtggtatctcattactgt 28044
to top
>gb|AC027670.6| Homo sapiens chromosome 10 clone RP11-176H12, complete sequence
          Length = 191805

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 9      gtagtggtatctcattactgt 29
              |||||||||||||||||||||
Sbjct: 119162 gtagtggtatctcattactgt 119182
to top
>gb|AC116026.1| Homo sapiens 3 BAC RP11-3F11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 90343

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 291   tcatcttgcttctcagctcct 311
             |||||||||||||||||||||
Sbjct: 27665 tcatcttgcttctcagctcct 27685
to top
>gb|AC015911.8| Homo sapiens chromosome 17, clone RP11-1094M14, complete sequence
          Length = 181561

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 21     cattactgtggttcactttttacaa 45
              |||||||||||||||||||| ||||
Sbjct: 108917 cattactgtggttcacttttcacaa 108893
to top
>gb|AC010746.8| Homo sapiens BAC clone RP11-550E21 from 2, complete sequence
          Length = 229379

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 148    attaacacaacaatggaattt 168
              |||||||||||||||||||||
Sbjct: 127413 attaacacaacaatggaattt 127433
to top
>gb|AC024958.8| Homo sapiens, clone RP11-561E1, complete sequence
          Length = 190534

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 9      gtagtggtatctcattactgt 29
              |||||||||||||||||||||
Sbjct: 185294 gtagtggtatctcattactgt 185274
to top
>gb|AC157480.3| Pan troglodytes BAC clone CH251-394P5 from chromosome unknown, complete
              sequence
          Length = 179883

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 21     cattactgtggttcactttttacaa 45
              |||||||||||||||||||| ||||
Sbjct: 105811 cattactgtggttcacttttcacaa 105787
to top
>gb|AC159215.2| Pan troglodytes BAC clone CH251-458G5 from chromosome unknown, complete
             sequence
          Length = 208565

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 21    cattactgtggttcactttttacaa 45
             |||||||||||||||||||| ||||
Sbjct: 38555 cattactgtggttcacttttcacaa 38531
to top
>gb|AC159904.2| Pan troglodytes BAC clone CH251-488L1 from chromosome unknown, complete
              sequence
          Length = 177340

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 21     cattactgtggttcactttttacaa 45
              |||||||||||||||||||| ||||
Sbjct: 152900 cattactgtggttcacttttcacaa 152876
to top
>dbj|AP001830.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-315O6, complete
              sequence
          Length = 214483

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 9      gtagtggtatctcattactgt 29
              |||||||||||||||||||||
Sbjct: 184130 gtagtggtatctcattactgt 184110
to top
>emb|CT005243.3| Pan troglodytes chromosome X clone RP43-008I08 map Xq28, complete
             sequence
          Length = 180222

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 9     gtagtggtatctcattactgt 29
             |||||||||||||||||||||
Sbjct: 70429 gtagtggtatctcattactgt 70449
to top
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 510    cagaatcagataaccaatca 529
              ||||||||||||||||||||
Sbjct: 982842 cagaatcagataaccaatca 982861
to top
>gb|AC161930.7| Mus musculus chromosome 7, clone RP23-157P17, complete sequence
          Length = 212109

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 173    ttctcttttgtacagtttag 192
              ||||||||||||||||||||
Sbjct: 151738 ttctcttttgtacagtttag 151719
to top
>gb|AC123840.4| Mus musculus BAC clone RP23-399K5 from chromosome 13, complete sequence
          Length = 191185

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   ctccgaatgaaccagagtgg 231
             ||||||||||||||||||||
Sbjct: 95640 ctccgaatgaaccagagtgg 95659
to top
>gb|AC141890.3| Mus musculus BAC clone RP23-410K18 from chromosome 7, complete sequence
          Length = 169771

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 597    tctgctccactttctcaagc 616
              ||||||||||||||||||||
Sbjct: 106718 tctgctccactttctcaagc 106737
to top
>gb|AC129017.4| Mus musculus BAC clone RP24-414A24 from chromosome 15, complete
             sequence
          Length = 153547

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   gcctccagcaaactgatgaa 359
             ||||||||||||||||||||
Sbjct: 23216 gcctccagcaaactgatgaa 23235
to top
>gb|AC127299.3| Mus musculus BAC clone RP23-264I11 from 7, complete sequence
          Length = 160602

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 597   tctgctccactttctcaagc 616
             ||||||||||||||||||||
Sbjct: 66395 tctgctccactttctcaagc 66414
to top
>gb|AC145772.1| Pan troglodytes BAC clone RP43-14J20 from 7, complete sequence
          Length = 165087

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    tagtggtatctcattactgt 29
             ||||||||||||||||||||
Sbjct: 60915 tagtggtatctcattactgt 60934
to top
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 508     tccagaatcagataaccaat 527
               ||||||||||||||||||||
Sbjct: 1775484 tccagaatcagataaccaat 1775503
to top
>emb|BX908798.1| Parachlamydia-related symbiont UWE25, complete genome
          Length = 2414465

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 627    tcctcttcaaagcttcttca 646
              ||||||||||||||||||||
Sbjct: 821526 tcctcttcaaagcttcttca 821507
to top
>gb|AY960140.1| Yellow fever virus strain ArB28153 polyprotein gene, partial cds
          Length = 1813

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 558  cggtggtcatgtctcttgta 577
            ||||||||||||||||||||
Sbjct: 1164 cggtggtcatgtctcttgta 1183
to top
>emb|BX640453.23| Zebrafish DNA sequence from clone DKEY-9L5 in linkage group 12,
             complete sequence
          Length = 223071

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 626   atcctcttcaaagcttcttc 645
             ||||||||||||||||||||
Sbjct: 79895 atcctcttcaaagcttcttc 79914
to top
>emb|AL773519.5| Mouse DNA sequence from clone RP23-42C15 on chromosome 4 Contains
              mitochondrial NADH dehydrogenase 5 and 6 (mt-Nd5, mt-Nd6)
              pseudogenes and a mitochondrial cytochrome b (Cytb)
              pseudogene, complete sequence
          Length = 204189

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 300    ttctcagctcctcgaagactttca 323
              ||||||||||||| ||||||||||
Sbjct: 196674 ttctcagctcctccaagactttca 196697
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>emb|BX248236.16| Zebrafish DNA sequence from clone CH211-207B24 in linkage group 3,
             complete sequence
          Length = 228572

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   ttctcttttgtacagtttag 192
             ||||||||||||||||||||
Sbjct: 77572 ttctcttttgtacagtttag 77591
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>dbj|AK012637.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2810002D13 product:hypothetical
           Leucine-rich repeat, typical subtype containing protein,
           full insert sequence
          Length = 1961

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 446 gtgaccctctccatgtactt 465
           ||||||||||||||||||||
Sbjct: 958 gtgaccctctccatgtactt 939
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>gb|AC006435.7|AC006435 Homo sapiens chromosome 17, clone RP5-59D14, complete sequence
          Length = 139267

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 6      taggtagtggtatctcatta 25
              ||||||||||||||||||||
Sbjct: 123071 taggtagtggtatctcatta 123052
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>dbj|AP001877.5| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2564P9, complete
             sequence
          Length = 167306

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 461   tacttccttgccagctgaactgac 484
             |||||||||| |||||||||||||
Sbjct: 34788 tacttccttggcagctgaactgac 34765
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>dbj|AP002833.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-688I9, complete
             sequence
          Length = 175562

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 628   cctcttcaaagcttcttcac 647
             ||||||||||||||||||||
Sbjct: 62704 cctcttcaaagcttcttcac 62685
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>gb|AC118196.12| Mus musculus chromosome 1, clone RP23-354J2, complete sequence
          Length = 189918

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 300    ttctcagctcctcgaagactttca 323
              ||||||||||||| ||||||||||
Sbjct: 122646 ttctcagctcctccaagactttca 122623
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>emb|AL935316.7| Zebrafish DNA sequence from clone CH211-239C9 in linkage group 3,
             complete sequence
          Length = 174887

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   ttctcttttgtacagtttag 192
             ||||||||||||||||||||
Sbjct: 32322 ttctcttttgtacagtttag 32303
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>gb|AY839634.1| Yellow fever virus strain HB1782/CAR86 envelope protein gene,
           partial cds
          Length = 1479

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 558 cggtggtcatgtctcttgta 577
           ||||||||||||||||||||
Sbjct: 831 cggtggtcatgtctcttgta 850
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>gb|U23571.1|YFU23571 Yellow fever virus isolate ArB8883/C. African Republic/1977/Human
           envelope protein (E) mRNA, partial cds
          Length = 1479

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 558 cggtggtcatgtctcttgta 577
           ||||||||||||||||||||
Sbjct: 831 cggtggtcatgtctcttgta 850
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>gb|AC134670.3| Homo sapiens chromosome 17, clone CTD-2283G11, complete sequence
          Length = 36100

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     taggtagtggtatctcatta 25
             ||||||||||||||||||||
Sbjct: 34181 taggtagtggtatctcatta 34200


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,929,257
Number of Sequences: 3902068
Number of extensions: 4929257
Number of successful extensions: 90714
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90340
Number of HSP's gapped (non-prelim): 368
length of query: 648
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 625
effective length of database: 17,143,297,704
effective search space: 10714561065000
effective search space used: 10714561065000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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