ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21f18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463160.1| Oryza sativa (japonica cultivar-group), mRNA 163 7e-37
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 163 7e-37
3gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genom... 163 7e-37
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 163 7e-37
5dbj|AB125311.1| Oryza sativa (japonica cultivar-group) SAPK10 mR... 163 7e-37
6dbj|AK100538.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 7e-37
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
8dbj|AB125310.1| Oryza sativa (japonica cultivar-group) SAPK9 mRN... 72 2e-09
9dbj|AK069697.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
10gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 72 2e-09
11emb|AL844880.3|CNS08CB3 Oryza sativa chromosome 12, . BAC OSJNBb... 72 2e-09
12gb|AY661658.1| Sorghum bicolor clone BAC 796all, complete sequence 70 8e-09
13gb|AY661657.1| Sorghum bicolor clone BAC 60H10, complete sequence 70 8e-09
14gb|AF519805.1| Triticum aestivum putative serine/threonine prote... 60 8e-06
15gb|AY104773.1| Zea mays PCO148380 mRNA sequence 50 0.008
16gb|BT016775.1| Zea mays clone Contig608 mRNA sequence 48 0.030
17gb|AY216939.1| Plasmodium vivax strain Belem YAC1H14-like sequence 48 0.030
18gb|AY216938.1| Plasmodium vivax strain IndiaVII YAC1H14-like seq... 48 0.030
19gb|AY216937.1| Plasmodium vivax strain Salvador I YAC1H14-like s... 48 0.030
20gb|AY216936.1| Plasmodium vivax strain Thai-NYU YAC1H14-like seq... 48 0.030
21gb|AY003872.1| Plasmodium vivax YAC 1H14, complete sequence 48 0.030
22dbj|AK112448.1| Ciona intestinalis cDNA, clone:ciad067h19, full ... 46 0.12
23ref|XM_469888.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.47
24gb|DQ191635.1| Solanum tuberosum serine/threonine protein kinase... 44 0.47
25gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genom... 44 0.47
26dbj|AB125309.1| Oryza sativa (japonica cultivar-group) SAPK8 mRN... 44 0.47
27dbj|AK104299.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.47
28dbj|AK060479.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.47
29gb|BT013653.1| Lycopersicon esculentum clone 132472F, mRNA sequence 42 1.9
30emb|AL445532.8| Human DNA sequence from clone RP11-263K15 on chr... 42 1.9
31gb|AC148525.14| Medicago truncatula clone mth2-24i13, complete s... 42 1.9
32emb|BX649001.1|HSM809152 Homo sapiens mRNA; cDNA DKFZp686D1394 (... 42 1.9
33emb|X83729.1|NTIPTVP31 N.tabacum mRNA for inorganic pyrophosphat... 42 1.9
34ref|XM_519508.1| PREDICTED: Pan troglodytes similar to myeloid/l... 40 7.3
35gb|BC063237.1| Danio rerio zgc:77816, mRNA (cDNA clone MGC:77816... 40 7.3
36ref|NM_021230.2| Homo sapiens myeloid/lymphoid or mixed-lineage ... 40 7.3
37ref|NM_170606.2| Homo sapiens myeloid/lymphoid or mixed-lineage ... 40 7.3
38ref|XM_751798.1| Ustilago maydis 521 hypothetical protein (UM007... 40 7.3
39ref|XM_757358.1| Ustilago maydis 521 hypothetical protein (UM063... 40 7.3
40emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete ... 40 7.3
41emb|BX640423.1| Bordetella parapertussis strain 12822, complete ... 40 7.3
42emb|BX640413.1| Bordetella pertussis strain Tohama I, complete g... 40 7.3
43emb|AL833924.1|HSM805235 Homo sapiens mRNA; cDNA DKFZp434D2011 (... 40 7.3
44ref|NM_200869.1| Danio rerio zgc:77816 (zgc:77816), mRNA 40 7.3
45gb|AY024361.1| Homo sapiens MLL3 mRNA, complete cds 40 7.3
46gb|AC126778.9| Medicago truncatula clone mth2-32j21, complete se... 40 7.3
47gb|AF264750.2| Homo sapiens ALR-like protein mRNA, complete cds 40 7.3
48ref|XM_693457.1| PREDICTED: Danio rerio similar to Deoxyribonucl... 40 7.3
49gb|AF396866.1|AF396866 Bacteriophage Mx8, complete genome 40 7.3
50gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 7.3
51gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 40 7.3
52gb|AC006017.2|AC006017 Homo sapiens PAC clone RP5-981O7 from 7q3... 40 7.3
53ref|NM_211316.1| Eremothecium gossypii AFR414Wp (AFR414W), mRNA 40 7.3
54emb|AL832387.1|HSM803695 Homo sapiens mRNA; cDNA DKFZp667D2312 (... 40 7.3 
>ref|XM_463160.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1089

 Score =  163 bits (82), Expect = 7e-37
 Identities = 179/211 (84%), Gaps = 3/211 (1%)
 Strand = Plus / Minus

                                                                        
Query: 333  tcacatggcatatacgatctccccgctgctttccacgtcgaggtcggcgtccgaatcaag 392
            |||||| || ||||| |||||||| |||||||||||||| || |||| ||| ||||||||
Sbjct: 1089 tcacatagcgtatactatctccccactgctttccacgtcaagatcggggtctgaatcaag 1030

                                                                        
Query: 393  gtcgtccatgtcgtcgtcaaggtcgagaccgtcgttcaagaactggttgatccga---ga 449
            ||| |||||||| || || ||||| || || || ||||||||||||||||| | |   ||
Sbjct: 1029 gtcctccatgtcatcatcgaggtcaaggccatcattcaagaactggttgattccaccaga 970

                                                                        
Query: 450  accagccgccgggatggtggcctccgccaggatctgcatgatctcgtccatgctctgcat 509
             ||||| || || ||||| ||||| ||||| |||||||||||||| ||||||||||||||
Sbjct: 969  cccagctgctggtatggtcgcctctgccagtatctgcatgatctcatccatgctctgcat 910

                                           
Query: 510  cggctgttcaggctnctcgtactggctgctc 540
             |||||||| |||| ||||||||||||||||
Sbjct: 909  tggctgttcgggctcctcgtactggctgctc 879
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  163 bits (82), Expect = 7e-37
 Identities = 179/211 (84%), Gaps = 3/211 (1%)
 Strand = Plus / Plus

                                                                            
Query: 333      tcacatggcatatacgatctccccgctgctttccacgtcgaggtcggcgtccgaatcaag 392
                |||||| || ||||| |||||||| |||||||||||||| || |||| ||| ||||||||
Sbjct: 22877024 tcacatagcgtatactatctccccactgctttccacgtcaagatcggggtctgaatcaag 22877083

                                                                            
Query: 393      gtcgtccatgtcgtcgtcaaggtcgagaccgtcgttcaagaactggttgatccga---ga 449
                ||| |||||||| || || ||||| || || || ||||||||||||||||| | |   ||
Sbjct: 22877084 gtcctccatgtcatcatcgaggtcaaggccatcattcaagaactggttgattccaccaga 22877143

                                                                            
Query: 450      accagccgccgggatggtggcctccgccaggatctgcatgatctcgtccatgctctgcat 509
                 ||||| || || ||||| ||||| ||||| |||||||||||||| ||||||||||||||
Sbjct: 22877144 cccagctgctggtatggtcgcctctgccagtatctgcatgatctcatccatgctctgcat 22877203

                                               
Query: 510      cggctgttcaggctnctcgtactggctgctc 540
                 |||||||| |||| ||||||||||||||||
Sbjct: 22877204 tggctgttcgggctcctcgtactggctgctc 22877234



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                         
Query: 484      tgcatgatctcgtccatgctctgcatcggctgttcaggctnctcgtactggctgctc 540
                ||||||||||  |||||| | ||||| ||||| ||||| | ||| ||||||||||||
Sbjct: 31353785 tgcatgatctgatccatggtttgcattggctgatcaggttcctcatactggctgctc 31353729
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>gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete
             sequence
          Length = 184783

 Score =  163 bits (82), Expect = 7e-37
 Identities = 179/211 (84%), Gaps = 3/211 (1%)
 Strand = Plus / Plus

                                                                         
Query: 333   tcacatggcatatacgatctccccgctgctttccacgtcgaggtcggcgtccgaatcaag 392
             |||||| || ||||| |||||||| |||||||||||||| || |||| ||| ||||||||
Sbjct: 79554 tcacatagcgtatactatctccccactgctttccacgtcaagatcggggtctgaatcaag 79613

                                                                         
Query: 393   gtcgtccatgtcgtcgtcaaggtcgagaccgtcgttcaagaactggttgatccga---ga 449
             ||| |||||||| || || ||||| || || || ||||||||||||||||| | |   ||
Sbjct: 79614 gtcctccatgtcatcatcgaggtcaaggccatcattcaagaactggttgattccaccaga 79673

                                                                         
Query: 450   accagccgccgggatggtggcctccgccaggatctgcatgatctcgtccatgctctgcat 509
              ||||| || || ||||| ||||| ||||| |||||||||||||| ||||||||||||||
Sbjct: 79674 cccagctgctggtatggtcgcctctgccagtatctgcatgatctcatccatgctctgcat 79733

                                            
Query: 510   cggctgttcaggctnctcgtactggctgctc 540
              |||||||| |||| ||||||||||||||||
Sbjct: 79734 tggctgttcgggctcctcgtactggctgctc 79764
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  163 bits (82), Expect = 7e-37
 Identities = 179/211 (84%), Gaps = 3/211 (1%)
 Strand = Plus / Plus

                                                                            
Query: 333      tcacatggcatatacgatctccccgctgctttccacgtcgaggtcggcgtccgaatcaag 392
                |||||| || ||||| |||||||| |||||||||||||| || |||| ||| ||||||||
Sbjct: 22870052 tcacatagcgtatactatctccccactgctttccacgtcaagatcggggtctgaatcaag 22870111

                                                                            
Query: 393      gtcgtccatgtcgtcgtcaaggtcgagaccgtcgttcaagaactggttgatccga---ga 449
                ||| |||||||| || || ||||| || || || ||||||||||||||||| | |   ||
Sbjct: 22870112 gtcctccatgtcatcatcgaggtcaaggccatcattcaagaactggttgattccaccaga 22870171

                                                                            
Query: 450      accagccgccgggatggtggcctccgccaggatctgcatgatctcgtccatgctctgcat 509
                 ||||| || || ||||| ||||| ||||| |||||||||||||| ||||||||||||||
Sbjct: 22870172 cccagctgctggtatggtcgcctctgccagtatctgcatgatctcatccatgctctgcat 22870231

                                               
Query: 510      cggctgttcaggctnctcgtactggctgctc 540
                 |||||||| |||| ||||||||||||||||
Sbjct: 22870232 tggctgttcgggctcctcgtactggctgctc 22870262



 Score = 44.1 bits (22), Expect = 0.47
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                         
Query: 484      tgcatgatctcgtccatgctctgcatcggctgttcaggctnctcgtactggctgctc 540
                ||||||||||  |||||| | ||||| ||||| ||||| | ||| ||||||||||||
Sbjct: 31444301 tgcatgatctgatccatggtttgcattggctgatcaggttcctcatactggctgctc 31444245
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>dbj|AB125311.1| Oryza sativa (japonica cultivar-group) SAPK10 mRNA for
            serine/threonine protein kinase SAPK10, complete cds
          Length = 1595

 Score =  163 bits (82), Expect = 7e-37
 Identities = 179/211 (84%), Gaps = 3/211 (1%)
 Strand = Plus / Minus

                                                                        
Query: 333  tcacatggcatatacgatctccccgctgctttccacgtcgaggtcggcgtccgaatcaag 392
            |||||| || ||||| |||||||| |||||||||||||| || |||| ||| ||||||||
Sbjct: 1170 tcacatagcgtatactatctccccactgctttccacgtcaagatcggggtctgaatcaag 1111

                                                                        
Query: 393  gtcgtccatgtcgtcgtcaaggtcgagaccgtcgttcaagaactggttgatccga---ga 449
            ||| |||||||| || || ||||| || || || ||||||||||||||||| | |   ||
Sbjct: 1110 gtcctccatgtcatcatcgaggtcaaggccatcattcaagaactggttgattccaccaga 1051

                                                                        
Query: 450  accagccgccgggatggtggcctccgccaggatctgcatgatctcgtccatgctctgcat 509
             ||||| || || ||||| ||||| ||||| |||||||||||||| ||||||||||||||
Sbjct: 1050 cccagctgctggtatggtcgcctctgccagtatctgcatgatctcatccatgctctgcat 991

                                           
Query: 510  cggctgttcaggctnctcgtactggctgctc 540
             |||||||| |||| ||||||||||||||||
Sbjct: 990  tggctgttcgggctcctcgtactggctgctc 960
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>dbj|AK100538.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102D08, full
            insert sequence
          Length = 1595

 Score =  163 bits (82), Expect = 7e-37
 Identities = 179/211 (84%), Gaps = 3/211 (1%)
 Strand = Plus / Minus

                                                                        
Query: 333  tcacatggcatatacgatctccccgctgctttccacgtcgaggtcggcgtccgaatcaag 392
            |||||| || ||||| |||||||| |||||||||||||| || |||| ||| ||||||||
Sbjct: 1170 tcacatagcgtatactatctccccactgctttccacgtcaagatcggggtctgaatcaag 1111

                                                                        
Query: 393  gtcgtccatgtcgtcgtcaaggtcgagaccgtcgttcaagaactggttgatccga---ga 449
            ||| |||||||| || || ||||| || || || ||||||||||||||||| | |   ||
Sbjct: 1110 gtcctccatgtcatcatcgaggtcaaggccatcattcaagaactggttgattccaccaga 1051

                                                                        
Query: 450  accagccgccgggatggtggcctccgccaggatctgcatgatctcgtccatgctctgcat 509
             ||||| || || ||||| ||||| ||||| |||||||||||||| ||||||||||||||
Sbjct: 1050 cccagctgctggtatggtcgcctctgccagtatctgcatgatctcatccatgctctgcat 991

                                           
Query: 510  cggctgttcaggctnctcgtactggctgctc 540
             |||||||| |||| ||||||||||||||||
Sbjct: 990  tggctgttcgggctcctcgtactggctgctc 960
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                           
Query: 475      gccaggatctgcatgatctcgtccatgctctgcatcggctgttcaggctnctcgtactg 533
                ||||| |||||||||||||||| |||  ||||||||||||| ||||||| |||||||||
Sbjct: 24493313 gccagtatctgcatgatctcgttcatattctgcatcggctggtcaggctcctcgtactg 24493371



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 90/109 (82%)
 Strand = Plus / Plus

                                                                            
Query: 335      acatggcatatacgatctccccgctgctttccacgtcgaggtcggcgtccgaatcaaggt 394
                ||||||||||||||||||| |||||||| || | ||| |||||   |||||| || |  |
Sbjct: 24493170 acatggcatatacgatctctccgctgctctcaatgtcaaggtcaaggtccgagtccatat 24493229

                                                                 
Query: 395      cgtccatgtcgtcgtcaaggtcgagaccgtcgttcaagaactggttgat 443
                | |||||||||||||| ||||| || | |||  ||||||||||||||||
Sbjct: 24493230 cctccatgtcgtcgtcgaggtcaaggctgtcagtcaagaactggttgat 24493278
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>dbj|AB125310.1| Oryza sativa (japonica cultivar-group) SAPK9 mRNA for
           serine/threonine protein kinase SAPK9, complete cds
          Length = 1519

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                      
Query: 475 gccaggatctgcatgatctcgtccatgctctgcatcggctgttcaggctnctcgtactg 533
           ||||| |||||||||||||||| |||  ||||||||||||| ||||||| |||||||||
Sbjct: 989 gccagtatctgcatgatctcgttcatattctgcatcggctggtcaggctcctcgtactg 931



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 89/109 (81%)
 Strand = Plus / Minus

                                                                        
Query: 335  acatggcatatacgatctccccgctgctttccacgtcgaggtcggcgtccgaatcaaggt 394
            ||||||||||||||||||| |||||||| || | ||| |||||   |||||| || |  |
Sbjct: 1132 acatggcatatacgatctctccgctgctctcaatgtcaaggtcaaggtccgagtccatat 1073

                                                             
Query: 395  cgtccatgtcgtcgtcaaggtcgagaccgtcgttcaagaactggttgat 443
            | |||||||||||||| ||||| || | |||  |||||||||| |||||
Sbjct: 1072 cctccatgtcgtcgtcgaggtcaaggctgtcagtcaagaactgattgat 1024
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>dbj|AK069697.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028J06, full
            insert sequence
          Length = 1641

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                       
Query: 475  gccaggatctgcatgatctcgtccatgctctgcatcggctgttcaggctnctcgtactg 533
            ||||| |||||||||||||||| |||  ||||||||||||| ||||||| |||||||||
Sbjct: 1153 gccagtatctgcatgatctcgttcatattctgcatcggctggtcaggctcctcgtactg 1095



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 90/109 (82%)
 Strand = Plus / Minus

                                                                        
Query: 335  acatggcatatacgatctccccgctgctttccacgtcgaggtcggcgtccgaatcaaggt 394
            ||||||||||||||||||| |||||||| || | ||| |||||   |||||| || |  |
Sbjct: 1296 acatggcatatacgatctctccgctgctctcaatgtcaaggtcaaggtccgagtccatat 1237

                                                             
Query: 395  cgtccatgtcgtcgtcaaggtcgagaccgtcgttcaagaactggttgat 443
            | |||||||||||||| ||||| || | |||  ||||||||||||||||
Sbjct: 1236 cctccatgtcgtcgtcgaggtcaaggctgtcagtcaagaactggttgat 1188
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                           
Query: 475      gccaggatctgcatgatctcgtccatgctctgcatcggctgttcaggctnctcgtactg 533
                ||||| |||||||||||||||| |||  ||||||||||||| ||||||| |||||||||
Sbjct: 24421519 gccagtatctgcatgatctcgttcatattctgcatcggctggtcaggctcctcgtactg 24421577



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 90/109 (82%)
 Strand = Plus / Plus

                                                                            
Query: 335      acatggcatatacgatctccccgctgctttccacgtcgaggtcggcgtccgaatcaaggt 394
                ||||||||||||||||||| |||||||| || | ||| |||||   |||||| || |  |
Sbjct: 24421376 acatggcatatacgatctctccgctgctctcaatgtcaaggtcaaggtccgagtccatat 24421435

                                                                 
Query: 395      cgtccatgtcgtcgtcaaggtcgagaccgtcgttcaagaactggttgat 443
                | |||||||||||||| ||||| || | |||  ||||||||||||||||
Sbjct: 24421436 cctccatgtcgtcgtcgaggtcaaggctgtcagtcaagaactggttgat 24421484
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>emb|AL844880.3|CNS08CB3 Oryza sativa chromosome 12, . BAC OSJNBb0049H14 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 120071

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                        
Query: 475   gccaggatctgcatgatctcgtccatgctctgcatcggctgttcaggctnctcgtactg 533
             ||||| |||||||||||||||| |||  ||||||||||||| ||||||| |||||||||
Sbjct: 64344 gccagtatctgcatgatctcgttcatattctgcatcggctggtcaggctcctcgtactg 64402



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 90/109 (82%)
 Strand = Plus / Plus

                                                                         
Query: 335   acatggcatatacgatctccccgctgctttccacgtcgaggtcggcgtccgaatcaaggt 394
             ||||||||||||||||||| |||||||| || | ||| |||||   |||||| || |  |
Sbjct: 64201 acatggcatatacgatctctccgctgctctcaatgtcaaggtcaaggtccgagtccatat 64260

                                                              
Query: 395   cgtccatgtcgtcgtcaaggtcgagaccgtcgttcaagaactggttgat 443
             | |||||||||||||| ||||| || | |||  ||||||||||||||||
Sbjct: 64261 cctccatgtcgtcgtcgaggtcaaggctgtcagtcaagaactggttgat 64309
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>gb|AY661658.1| Sorghum bicolor clone BAC 796all, complete sequence
          Length = 103167

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                         
Query: 469   gcctccgccaggatctgcatgatctcgtccatgctctgcatcggctgttcaggctnctcg 528
             ||||| ||||| |||||||||||||||| |||| ||||||||||||| || |||| ||||
Sbjct: 26423 gcctcagccagtatctgcatgatctcgttcatgttctgcatcggctggtccggctcctcg 26482

               
Query: 529   ta 530
             ||
Sbjct: 26483 ta 26484
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>gb|AY661657.1| Sorghum bicolor clone BAC 60H10, complete sequence
          Length = 125927

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 55/62 (88%)
 Strand = Plus / Plus

                                                                         
Query: 469   gcctccgccaggatctgcatgatctcgtccatgctctgcatcggctgttcaggctnctcg 528
             ||||| ||||| |||||||||||||||| |||| ||||||||||||| || |||| ||||
Sbjct: 93068 gcctcagccagtatctgcatgatctcgttcatgttctgcatcggctggtccggctcctcg 93127

               
Query: 529   ta 530
             ||
Sbjct: 93128 ta 93129
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>gb|AF519805.1| Triticum aestivum putative serine/threonine protein kinase (PK4)
           mRNA, complete cds
          Length = 1063

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                 
Query: 478 aggatctgcatgatctcgtccatgctctgcatcggctg 515
           ||||||||||||||||| ||||||||||||| ||||||
Sbjct: 875 aggatctgcatgatctcatccatgctctgcaccggctg 838
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>gb|AY104773.1| Zea mays PCO148380 mRNA sequence
          Length = 1586

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 51/60 (85%)
 Strand = Plus / Minus

                                                                        
Query: 481  atctgcatgatctcgtccatgctctgcatcggctgttcaggctnctcgtactggctgctc 540
            |||||||||||||  |||||| ||||||| ||||| ||||||| ||| || ||| |||||
Sbjct: 1134 atctgcatgatctgatccatggtctgcattggctgatcaggctcctcatattggttgctc 1075
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>gb|BT016775.1| Zea mays clone Contig608 mRNA sequence
          Length = 1638

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 481  atctgcatgatctcgtccatgctctgcatcggctgttcaggctnctc 527
            |||||||||||||  |||||| ||||||| ||||| ||||||| |||
Sbjct: 1113 atctgcatgatctgatccatggtctgcattggctggtcaggctcctc 1067
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>gb|AY216939.1| Plasmodium vivax strain Belem YAC1H14-like sequence
          Length = 101016

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 216   tttgtgggctatcaagcatgagca 239
             ||||||||||||||||||||||||
Sbjct: 19086 tttgtgggctatcaagcatgagca 19063
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>gb|AY216938.1| Plasmodium vivax strain IndiaVII YAC1H14-like sequence
          Length = 101158

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 216   tttgtgggctatcaagcatgagca 239
             ||||||||||||||||||||||||
Sbjct: 19178 tttgtgggctatcaagcatgagca 19155
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>gb|AY216937.1| Plasmodium vivax strain Salvador I YAC1H14-like sequence
          Length = 101095

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 216   tttgtgggctatcaagcatgagca 239
             ||||||||||||||||||||||||
Sbjct: 19086 tttgtgggctatcaagcatgagca 19063
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>gb|AY216936.1| Plasmodium vivax strain Thai-NYU YAC1H14-like sequence
          Length = 101002

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 216   tttgtgggctatcaagcatgagca 239
             ||||||||||||||||||||||||
Sbjct: 19084 tttgtgggctatcaagcatgagca 19061
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>gb|AY003872.1| Plasmodium vivax YAC 1H14, complete sequence
          Length = 199866

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 216   tttgtgggctatcaagcatgagca 239
             ||||||||||||||||||||||||
Sbjct: 65350 tttgtgggctatcaagcatgagca 65327
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>dbj|AK112448.1| Ciona intestinalis cDNA, clone:ciad067h19, full insert sequence
          Length = 2275

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 15  tacaacacatatacatggtacaa 37
           |||||||||||||||||||||||
Sbjct: 857 tacaacacatatacatggtacaa 835
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>ref|XM_469888.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1474

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                     
Query: 484  tgcatgatctcgtccatgctctgcatcggctgttcaggctnctcgtactggctgctc 540
            ||||||||||  |||||| | ||||| ||||| ||||| | ||| ||||||||||||
Sbjct: 1037 tgcatgatctgatccatggtttgcattggctgatcaggttcctcatactggctgctc 981
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>gb|DQ191635.1| Solanum tuberosum serine/threonine protein kinase SAPK8-like protein
            mRNA, complete cds
          Length = 1622

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 333  tcacatggcatatacgatctccccgctgct 362
            |||||| ||||||| |||||||||||||||
Sbjct: 1318 tcacattgcatatatgatctccccgctgct 1289
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>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete
              sequence
          Length = 159091

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 48/57 (84%)
 Strand = Plus / Plus

                                                                       
Query: 484    tgcatgatctcgtccatgctctgcatcggctgttcaggctnctcgtactggctgctc 540
              ||||||||||  |||||| | ||||| ||||| ||||| | ||| ||||||||||||
Sbjct: 142015 tgcatgatctgatccatggtttgcattggctgatcaggttcctcatactggctgctc 142071
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>dbj|AB125309.1| Oryza sativa (japonica cultivar-group) SAPK8 mRNA for
            serine/threonine protein kinase SAPK8, complete cds
          Length = 1450

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                     
Query: 484  tgcatgatctcgtccatgctctgcatcggctgttcaggctnctcgtactggctgctc 540
            ||||||||||  |||||| | ||||| ||||| ||||| | ||| ||||||||||||
Sbjct: 1064 tgcatgatctgatccatggtttgcattggctgatcaggttcctcatactggctgctc 1008
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>dbj|AK104299.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-D02, full
           insert sequence
          Length = 1046

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                    
Query: 484 tgcatgatctcgtccatgctctgcatcggctgttcaggctnctcgtactggctgctc 540
           ||||||||||  |||||| | ||||| ||||| ||||| | ||| ||||||||||||
Sbjct: 621 tgcatgatctgatccatggtttgcattggctgatcaggttcctcatactggctgctc 565
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>dbj|AK060479.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-G05, full
           insert sequence
          Length = 1156

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                    
Query: 484 tgcatgatctcgtccatgctctgcatcggctgttcaggctnctcgtactggctgctc 540
           ||||||||||  |||||| | ||||| ||||| ||||| | ||| ||||||||||||
Sbjct: 719 tgcatgatctgatccatggtttgcattggctgatcaggttcctcatactggctgctc 663
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>gb|BT013653.1| Lycopersicon esculentum clone 132472F, mRNA sequence
          Length = 1639

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 481  atctgcatgatctcgtccatgctctgcat 509
            ||||||||||| ||||| |||||||||||
Sbjct: 1166 atctgcatgatttcgtcaatgctctgcat 1138
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>emb|AL445532.8| Human DNA sequence from clone RP11-263K15 on chromosome 9 Contains the
             3' end of the NTRK2 gene for Neurotrophic tyrosine kinase,
             receptor, type 2 (TRKB), complete sequence
          Length = 171629

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 9     tttgcctacaacacatataca 29
             |||||||||||||||||||||
Sbjct: 83919 tttgcctacaacacatataca 83899
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>gb|AC148525.14| Medicago truncatula clone mth2-24i13, complete sequence
          Length = 94953

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 499   atgctctgcatcggctgttcaggct 523
             ||||||||||| |||||||||||||
Sbjct: 41226 atgctctgcatgggctgttcaggct 41202
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>emb|BX649001.1|HSM809152 Homo sapiens mRNA; cDNA DKFZp686D1394 (from clone DKFZp686D1394)
          Length = 4662

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 9    tttgcctacaacacatataca 29
            |||||||||||||||||||||
Sbjct: 3745 tttgcctacaacacatataca 3725
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>emb|X83729.1|NTIPTVP31 N.tabacum mRNA for inorganic pyrophosphatase (TVP31 clone)
          Length = 2867

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 481 atctgcatgatctcgtccatgctctgcat 509
           ||||||||||| ||||| |||||||||||
Sbjct: 42  atctgcatgatttcgtcaatgctctgcat 14
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>ref|XM_519508.1| PREDICTED: Pan troglodytes similar to myeloid/lymphoid or
            mixed-lineage leukemia 3; myeloid/lymphoid or
            mixed-lineage leukemia3; ALR-like protein (LOC463875),
            mRNA
          Length = 11622

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 468  ggcctccgccaggatctgca 487
            ||||||||||||||||||||
Sbjct: 9635 ggcctccgccaggatctgca 9654
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>gb|BC063237.1| Danio rerio zgc:77816, mRNA (cDNA clone MGC:77816 IMAGE:7001543),
           complete cds
          Length = 3316

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 424 tcgttcaagaactggttgat 443
           ||||||||||||||||||||
Sbjct: 381 tcgttcaagaactggttgat 362
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>ref|NM_021230.2| Homo sapiens myeloid/lymphoid or mixed-lineage leukemia 3 (MLL3),
             transcript variant 1, mRNA
          Length = 14358

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 468   ggcctccgccaggatctgca 487
             ||||||||||||||||||||
Sbjct: 10154 ggcctccgccaggatctgca 10173
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>ref|NM_170606.2| Homo sapiens myeloid/lymphoid or mixed-lineage leukemia 3 (MLL3),
             transcript variant 2, mRNA
          Length = 16872

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 468   ggcctccgccaggatctgca 487
             ||||||||||||||||||||
Sbjct: 12656 ggcctccgccaggatctgca 12675
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>ref|XM_751798.1| Ustilago maydis 521 hypothetical protein (UM00744.1) partial mRNA
          Length = 1968

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 381  gtccgaatcaaggtcgtccatgtc 404
            ||||| ||||||||||||||||||
Sbjct: 1902 gtccgcatcaaggtcgtccatgtc 1879
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>ref|XM_757358.1| Ustilago maydis 521 hypothetical protein (UM06304.1) partial mRNA
          Length = 4350

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 391  aggtcgtccatgtcgtcgtc 410
            ||||||||||||||||||||
Sbjct: 2813 aggtcgtccatgtcgtcgtc 2794
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>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16
          Length = 347356

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 464    tggtggcctccgccaggatctgcatgat 491
              ||||||||| || |||||||||||||||
Sbjct: 320553 tggtggcctgcgacaggatctgcatgat 320526
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>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14
          Length = 348251

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 464    tggtggcctccgccaggatctgcatgat 491
              ||||||||| || |||||||||||||||
Sbjct: 325206 tggtggcctgcgacaggatctgcatgat 325179
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>emb|BX640413.1| Bordetella pertussis strain Tohama I, complete genome; segment 3/12
          Length = 349028

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 464   tggtggcctccgccaggatctgcatgat 491
             ||||||||| || |||||||||||||||
Sbjct: 69845 tggtggcctgcgacaggatctgcatgat 69818
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>emb|AL833924.1|HSM805235 Homo sapiens mRNA; cDNA DKFZp434D2011 (from clone DKFZp434D2011)
          Length = 5025

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 468 ggcctccgccaggatctgca 487
           ||||||||||||||||||||
Sbjct: 803 ggcctccgccaggatctgca 822
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>ref|NM_200869.1| Danio rerio zgc:77816 (zgc:77816), mRNA
          Length = 3316

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 424 tcgttcaagaactggttgat 443
           ||||||||||||||||||||
Sbjct: 381 tcgttcaagaactggttgat 362
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>gb|AY024361.1| Homo sapiens MLL3 mRNA, complete cds
          Length = 14977

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 468   ggcctccgccaggatctgca 487
             ||||||||||||||||||||
Sbjct: 12617 ggcctccgccaggatctgca 12636
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>gb|AC126778.9| Medicago truncatula clone mth2-32j21, complete sequence
          Length = 110448

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    tacatggtacaaacatgatg 45
             ||||||||||||||||||||
Sbjct: 18860 tacatggtacaaacatgatg 18879
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>gb|AF264750.2| Homo sapiens ALR-like protein mRNA, complete cds
          Length = 12689

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 468   ggcctccgccaggatctgca 487
             ||||||||||||||||||||
Sbjct: 10154 ggcctccgccaggatctgca 10173
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>ref|XM_693457.1| PREDICTED: Danio rerio similar to Deoxyribonuclease gamma precursor
           (DNase gamma) (Deoxyribonuclease I-like 3) (DNase I
           homolog protein DHP2) (Liver and spleen DNase)
           (LS-DNase) (LSD) (LOC573782), partial mRNA
          Length = 490

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 424 tcgttcaagaactggttgat 443
           ||||||||||||||||||||
Sbjct: 162 tcgttcaagaactggttgat 143
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>gb|AF396866.1|AF396866 Bacteriophage Mx8, complete genome
          Length = 49534

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 365   ccacgtcgaggtcggcgtcc 384
             ||||||||||||||||||||
Sbjct: 11753 ccacgtcgaggtcggcgtcc 11734
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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
               complete sequence
          Length = 1813164

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 391     aggtcgtccatgtcgtcgtc 410
               ||||||||||||||||||||
Sbjct: 1177206 aggtcgtccatgtcgtcgtc 1177187
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 473    ccgccaggatctgcatgatc 492
              ||||||||||||||||||||
Sbjct: 917105 ccgccaggatctgcatgatc 917086
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>gb|AC006017.2|AC006017 Homo sapiens PAC clone RP5-981O7 from 7q34-q36, complete sequence
          Length = 162556

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 468    ggcctccgccaggatctgca 487
              ||||||||||||||||||||
Sbjct: 143437 ggcctccgccaggatctgca 143418
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>ref|NM_211316.1| Eremothecium gossypii AFR414Wp (AFR414W), mRNA
          Length = 819

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 391 aggtcgtccatgtcgtcgtc 410
           ||||||||||||||||||||
Sbjct: 365 aggtcgtccatgtcgtcgtc 346
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>emb|AL832387.1|HSM803695 Homo sapiens mRNA; cDNA DKFZp667D2312 (from clone DKFZp667D2312)
          Length = 11198

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 468  ggcctccgccaggatctgca 487
            ||||||||||||||||||||
Sbjct: 5119 ggcctccgccaggatctgca 5138


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,162,505
Number of Sequences: 3902068
Number of extensions: 3162505
Number of successful extensions: 52141
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51886
Number of HSP's gapped (non-prelim): 250
length of query: 540
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 517
effective length of database: 17,143,297,704
effective search space: 8863084912968
effective search space used: 8863084912968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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