ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21f16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 69 2e-17
2FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 57 7e-11
3APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 27 0.58
4PURA1_CHRVO (Q7P071) Adenylosuccinate synthetase 1 (EC 6.3.4.4) ... 31 0.66
5MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, trac... 30 1.5
6RIP_RAT (Q4G2Y1) RPA-interacting protein 30 1.9
7SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1 29 2.5
8SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1... 29 2.5
9MUCAP_PIG (P12021) Apomucin (Mucin core protein) (Fragment) 29 3.3
10APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 25 3.4
11OXYR_MYCLE (P52678) Probable hydrogen peroxide-inducible genes a... 28 4.3
12CRUM2_MOUSE (Q80YA8) Crumbs homolog 2 (Crumbs-like protein 2) (F... 28 4.3
13CRYD_ORYSA (Q651U1) Cryptochrome DASH, chloroplast/mitochondrial... 28 5.6
14STK19_HUMAN (P49842) Serine/threonine-protein kinase 19 (EC 2.7.... 28 5.6
15JAG1A_BRARE (Q90Y57) Jagged-1a precursor (Jagged1a) (Jagged1) 28 7.3
16RIP_HUMAN (Q86UA6) RPA-interacting protein (hRIP) 28 7.3
17PGPA_HAEIN (P44157) Phosphatidylglycerophosphatase A (EC 3.1.3.27) 27 9.5
18SYFB_BARQU (Q6G0Y3) Phenylalanyl-tRNA synthetase beta chain (EC ... 27 9.5
19RBFA_CAUCR (Q9AC30) Ribosome-binding factor A 27 9.5
20TSNA1_HUMAN (Q96NA8) t-SNARE domain-containing protein 1 27 9.5
21SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1... 27 9.5

>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 69.3 bits (168), Expect(2) = 2e-17
 Identities = 35/70 (50%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
 Frame = -2

Query: 263 GQYNFDKNIRCGDPVLEGX-------SCXDPSKSVSWDGVHLXEAAYKFIFDQIVDGALS 105
           G+YNF     CGD V           SC  PS  V+WDG H  EAA ++ FDQI  GA S
Sbjct: 310 GKYNFSVTAPCGDTVTADDGTKIVVGSCACPSVRVNWDGAHYTEAANEYFFDQISTGAFS 369

Query: 104 DPPVPLRGAC 75
           DPPVPL  AC
Sbjct: 370 DPPVPLNMAC 379



 Score = 37.4 bits (85), Expect(2) = 2e-17
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -1

Query: 354 DVYAAXXKLMSEAKKFGFGDPLRVCCGYGXR 262
           D+Y+    L SE +K GF  PL  CCGYG +
Sbjct: 281 DIYSVKYSLFSEPEKHGFEFPLITCCGYGGK 311



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>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 56.6 bits (135), Expect(2) = 7e-11
 Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
 Frame = -2

Query: 263 GQYNFDKNIRCG-------DPVLEGXSCXDPSKSVSWDGVHLXEAAYKFIFDQIVDG 114
           G+YN++K I CG         V  G  C +P K+V WDGVH  +AA KFIFD+I  G
Sbjct: 308 GKYNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQAANKFIFDKIAPG 364



 Score = 27.7 bits (60), Expect(2) = 7e-11
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 354 DVYAAXXKLMSEAKKFGFGDPLRVCCGYGXR 262
           DVY+   +L   A+  GF   L  CCG+G +
Sbjct: 279 DVYSLKHELFVHAQGHGFKGSLVSCCGHGGK 309



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 27.3 bits (59), Expect(2) = 0.58
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 203 CXDPSKSVSWDGVHLXEAAYKFI 135
           C + S  + WDGVH  + AYK I
Sbjct: 498 CPNTSSYLFWDGVHPTQRAYKTI 520



 Score = 22.7 bits (47), Expect(2) = 0.58
 Identities = 7/29 (24%), Positives = 14/29 (48%)
 Frame = -1

Query: 354 DVYAAXXKLMSEAKKFGFGDPLRVCCGYG 268
           D+Y    +++     +GF +  + CC  G
Sbjct: 454 DIYTIISQMLETPAAYGFEETKKPCCKTG 482



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>PURA1_CHRVO (Q7P071) Adenylosuccinate synthetase 1 (EC 6.3.4.4) (IMP--aspartate|
           ligase 1) (AdSS 1) (AMPSase 1)
          Length = 432

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = -1

Query: 297 DPLRVCCGYGXRPVQLRQEHPVR*SGPRGXXLXGPIEERXLGWGALXRGSLQIHLRPDRG 118
           D LR+C GY    V LR ++P   +G        P+ E   GW    RG+  +   P+  
Sbjct: 337 DELRICTGYRVDGV-LRDDYP---AGLAERGRVAPVYETLPGWQESTRGARSLDALPEAA 392

Query: 117 RRSLR 103
           R  +R
Sbjct: 393 RAYVR 397



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>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)|
            (High molecular weight salivary mucin MG1) (Sublingual
            gland mucin)
          Length = 5703

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 152  PLXSAPHPSXRSSMGPXKXXPLGPDHRTGCSCRSCTGRXPYPQHTRRGSPKPN 310
            P  S+PHPS R++  P       P H T  S  + T     P  TR  +  P+
Sbjct: 4006 PALSSPHPSSRTTESPPSPGTTTPGHTTATSRTTATAT---PSKTRTSTLLPS 4055



 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 152  PLXSAPHPSXRSSMGPXKXXPLGPDHRTGCSCRSCTGRXPYPQHTRRGSPKPN 310
            P  S+PHPS R++  P       P H  G S  + T     P  TR  +  P+
Sbjct: 3477 PALSSPHPSSRTTESPPSPGTTTPGHTRGTSRTTATAT---PSKTRTSTLLPS 3526



 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 152  PLXSAPHPSXRSSMGPXKXXPLGPDHRTGCSCRSCTGRXPYPQHTRRGSPKPN 310
            P  S+PHPS R++  P       P H T  S  + T     P  TR  +  P+
Sbjct: 2779 PALSSPHPSSRTTESPPSPGTTTPGHTTATSRTTATAT---PSKTRTSTLLPS 2828



 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 152  PLXSAPHPSXRSSMGPXKXXPLGPDHRTGCSCRSCTGRXPYPQHTRRGSPKPN 310
            P  S+PHPS R++  P       P H T  S  + T     P  TR  +  P+
Sbjct: 2250 PALSSPHPSSRTTESPPSPGTTTPGHTTATSRTTATAT---PSKTRTSTLLPS 2299



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>RIP_RAT (Q4G2Y1) RPA-interacting protein|
          Length = 219

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 28  IQNLINEHDAHCPLPWQAPR-KGTGGSERAPSTIWS 132
           ++  +NEH AHCP     P    TGG+E  PS + S
Sbjct: 176 LEGNVNEHSAHCP---HIPEFSVTGGTEEKPSLLMS 208



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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +2

Query: 146 KLPLXSAPHPSXRSSMGPXKXXP-LGPDHRTGCSCRSCTGRXPYPQHTRRGSPKP 307
           K  +  +P P  RSS    +  P L   HR G S    T     PQ  +R SP P
Sbjct: 646 KRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSP 700



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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +2

Query: 146 KLPLXSAPHPSXRSSMGPXKXXP-LGPDHRTGCSCRSCTGRXPYPQHTRRGSPKP 307
           K  +  +P P  RSS    +  P L   HR G S    T     PQ  +R SP P
Sbjct: 632 KRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSP 686



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>MUCAP_PIG (P12021) Apomucin (Mucin core protein) (Fragment)|
          Length = 1150

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +1

Query: 43   NEHDAHCPLPWQAPR--KGTGGSERAPSTIWSKMNL*AASXKCTPSQLTLFDGSXQXXPS 216
            NE+   CP P   P    G  G E++P  +W+     A   KCT ++    D   +  PS
Sbjct: 915  NENKTGCPAPLPPPPVCHGPLGEEKSPGDVWT-----ANCHKCTCTEAKTVDCKPKECPS 969



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>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 25.4 bits (54), Expect(2) = 3.4
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 354 DVYAAXXKLMSEAKKFGFGDPLRVCCGYG 268
           D+Y+   K++   + +GF +  + CC  G
Sbjct: 371 DIYSIFSKMLESPEDYGFEEIKKPCCKIG 399



 Score = 21.9 bits (45), Expect(2) = 3.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 233 CGDPVLEGXSCXDPSKSVSWDGVHLXEAAYK 141
           C +  L+  S  + S  + WDG+H  + AY+
Sbjct: 407 CKERTLKNMS--NASSYLFWDGLHPSQRAYE 435



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>OXYR_MYCLE (P52678) Probable hydrogen peroxide-inducible genes activator|
          Length = 311

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 149 LPLXSAPHPSXRSSMGPXKXXPLGPDHRTGCSCRSCTGR 265
           LP  +AP  S RS +G  +     P  R G + RS +GR
Sbjct: 248 LPQSAAPVESVRSKLGLAQFAAPCPGRRIGLAFRSASGR 286



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>CRUM2_MOUSE (Q80YA8) Crumbs homolog 2 (Crumbs-like protein 2) (Fragment)|
          Length = 1248

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -2

Query: 311 SSVLGILCVCVAGTAXGQYNFDKNIRCGDPVLEGXSCXD 195
           S   G LC C  G A    + D +     P L G SC D
Sbjct: 269 SHAAGFLCSCPLGFAGNDCSMDVDECASGPCLNGGSCQD 307



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>CRYD_ORYSA (Q651U1) Cryptochrome DASH, chloroplast/mitochondrial precursor|
          Length = 582

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 154 RQLTNSSSTRSWTALSPTLRCLCVGPARAKGNAHH 50
           R L N +  R+W A    L   CV P  + G+ H+
Sbjct: 95  RVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHY 129



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>STK19_HUMAN (P49842) Serine/threonine-protein kinase 19 (EC 2.7.11.1) (Protein|
           RP1) (Protein G11)
          Length = 368

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 129 PDRGRRSLRPSGAFAWGLPGQ 67
           P RGRR  RP G  A G PG+
Sbjct: 59  PIRGRRGARPGGGDAGGTPGE 79



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>JAG1A_BRARE (Q90Y57) Jagged-1a precursor (Jagged1a) (Jagged1)|
          Length = 1242

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = -2

Query: 314 KSSVLGILCVCVAGTAXGQYNFDKNIRCGDPVLEGXSCXD 195
           K  V G  CVC AG A  +   D +     P L G  C D
Sbjct: 466 KDLVNGYRCVCAAGFAGDRCERDVDECASRPCLNGGRCQD 505



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>RIP_HUMAN (Q86UA6) RPA-interacting protein (hRIP)|
          Length = 219

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 28  IQNLINEHDAHCPLPWQAPR-KGTGGSERAPSTIWS 132
           ++  INEH AHCP     P    TGG+E   S + S
Sbjct: 176 LEGSINEHSAHCP---HTPEFSVTGGTEEKSSLLMS 208



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>PGPA_HAEIN (P44157) Phosphatidylglycerophosphatase A (EC 3.1.3.27)|
          Length = 163

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +3

Query: 96  RRVGESAVHD---LVEDEFVSCLXQVHPIPAXALRWVLARXXL 215
           +   +  VHD   +V DEFV     +  IP+ + +W+LA   L
Sbjct: 73  KTTADMGVHDHGSIVWDEFVGVFIVLAAIPSLSWQWILAAFAL 115



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>SYFB_BARQU (Q6G0Y3) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 804

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 98  PVPLRGACQGKGQCASCSLIR 36
           P+PL G  + KGQ  +C+ IR
Sbjct: 476 PIPLEGFAEAKGQVLTCTQIR 496



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>RBFA_CAUCR (Q9AC30) Ribosome-binding factor A|
          Length = 149

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3

Query: 69  ALAGPTQRHRRVGESAVHDLVE 134
           AL GP+QR  R GE   H LVE
Sbjct: 11  ALTGPSQRQLRAGELIRHALVE 32



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>TSNA1_HUMAN (Q96NA8) t-SNARE domain-containing protein 1|
          Length = 513

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = +2

Query: 167 PHPSXRSSMGPXKXXPLGPDHRTGCSCRSCTGRXPYPQHTRRGSPKPNF 313
           P P+   ++GP K    GP            GR   P  TR    KPNF
Sbjct: 91  PEPTSSPTIGPRKDSAAGPH-----------GRMAGPSATRAKKRKPNF 128



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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = +2

Query: 146 KLPLXSAPHPSXRSSMGPXKXXP-LGPDHRTGCSCRSCTGRXPYPQHTRRGSPKP 307
           K  +  +P P  RS     +  P L   HR G S    T     PQ  +R SP P
Sbjct: 651 KRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSP 705


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,969,583
Number of Sequences: 219361
Number of extensions: 1044607
Number of successful extensions: 2696
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2693
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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