Clone Name | rbasd21f16 |
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Clone Library Name | barley_pub |
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 69.3 bits (168), Expect(2) = 2e-17 Identities = 35/70 (50%), Positives = 39/70 (55%), Gaps = 7/70 (10%) Frame = -2 Query: 263 GQYNFDKNIRCGDPVLEGX-------SCXDPSKSVSWDGVHLXEAAYKFIFDQIVDGALS 105 G+YNF CGD V SC PS V+WDG H EAA ++ FDQI GA S Sbjct: 310 GKYNFSVTAPCGDTVTADDGTKIVVGSCACPSVRVNWDGAHYTEAANEYFFDQISTGAFS 369 Query: 104 DPPVPLRGAC 75 DPPVPL AC Sbjct: 370 DPPVPLNMAC 379 Score = 37.4 bits (85), Expect(2) = 2e-17 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = -1 Query: 354 DVYAAXXKLMSEAKKFGFGDPLRVCCGYGXR 262 D+Y+ L SE +K GF PL CCGYG + Sbjct: 281 DIYSVKYSLFSEPEKHGFEFPLITCCGYGGK 311
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 56.6 bits (135), Expect(2) = 7e-11 Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 7/57 (12%) Frame = -2 Query: 263 GQYNFDKNIRCG-------DPVLEGXSCXDPSKSVSWDGVHLXEAAYKFIFDQIVDG 114 G+YN++K I CG V G C +P K+V WDGVH +AA KFIFD+I G Sbjct: 308 GKYNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQAANKFIFDKIAPG 364 Score = 27.7 bits (60), Expect(2) = 7e-11 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = -1 Query: 354 DVYAAXXKLMSEAKKFGFGDPLRVCCGYGXR 262 DVY+ +L A+ GF L CCG+G + Sbjct: 279 DVYSLKHELFVHAQGHGFKGSLVSCCGHGGK 309
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 27.3 bits (59), Expect(2) = 0.58 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = -2 Query: 203 CXDPSKSVSWDGVHLXEAAYKFI 135 C + S + WDGVH + AYK I Sbjct: 498 CPNTSSYLFWDGVHPTQRAYKTI 520 Score = 22.7 bits (47), Expect(2) = 0.58 Identities = 7/29 (24%), Positives = 14/29 (48%) Frame = -1 Query: 354 DVYAAXXKLMSEAKKFGFGDPLRVCCGYG 268 D+Y +++ +GF + + CC G Sbjct: 454 DIYTIISQMLETPAAYGFEETKKPCCKTG 482
>PURA1_CHRVO (Q7P071) Adenylosuccinate synthetase 1 (EC 6.3.4.4) (IMP--aspartate| ligase 1) (AdSS 1) (AMPSase 1) Length = 432 Score = 31.2 bits (69), Expect = 0.66 Identities = 20/65 (30%), Positives = 29/65 (44%) Frame = -1 Query: 297 DPLRVCCGYGXRPVQLRQEHPVR*SGPRGXXLXGPIEERXLGWGALXRGSLQIHLRPDRG 118 D LR+C GY V LR ++P +G P+ E GW RG+ + P+ Sbjct: 337 DELRICTGYRVDGV-LRDDYP---AGLAERGRVAPVYETLPGWQESTRGARSLDALPEAA 392 Query: 117 RRSLR 103 R +R Sbjct: 393 RAYVR 397
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = +2 Query: 152 PLXSAPHPSXRSSMGPXKXXPLGPDHRTGCSCRSCTGRXPYPQHTRRGSPKPN 310 P S+PHPS R++ P P H T S + T P TR + P+ Sbjct: 4006 PALSSPHPSSRTTESPPSPGTTTPGHTTATSRTTATAT---PSKTRTSTLLPS 4055 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = +2 Query: 152 PLXSAPHPSXRSSMGPXKXXPLGPDHRTGCSCRSCTGRXPYPQHTRRGSPKPN 310 P S+PHPS R++ P P H G S + T P TR + P+ Sbjct: 3477 PALSSPHPSSRTTESPPSPGTTTPGHTRGTSRTTATAT---PSKTRTSTLLPS 3526 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = +2 Query: 152 PLXSAPHPSXRSSMGPXKXXPLGPDHRTGCSCRSCTGRXPYPQHTRRGSPKPN 310 P S+PHPS R++ P P H T S + T P TR + P+ Sbjct: 2779 PALSSPHPSSRTTESPPSPGTTTPGHTTATSRTTATAT---PSKTRTSTLLPS 2828 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/53 (32%), Positives = 23/53 (43%) Frame = +2 Query: 152 PLXSAPHPSXRSSMGPXKXXPLGPDHRTGCSCRSCTGRXPYPQHTRRGSPKPN 310 P S+PHPS R++ P P H T S + T P TR + P+ Sbjct: 2250 PALSSPHPSSRTTESPPSPGTTTPGHTTATSRTTATAT---PSKTRTSTLLPS 2299
>RIP_RAT (Q4G2Y1) RPA-interacting protein| Length = 219 Score = 29.6 bits (65), Expect = 1.9 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = +1 Query: 28 IQNLINEHDAHCPLPWQAPR-KGTGGSERAPSTIWS 132 ++ +NEH AHCP P TGG+E PS + S Sbjct: 176 LEGNVNEHSAHCP---HIPEFSVTGGTEEKPSLLMS 208
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Frame = +2 Query: 146 KLPLXSAPHPSXRSSMGPXKXXP-LGPDHRTGCSCRSCTGRXPYPQHTRRGSPKP 307 K + +P P RSS + P L HR G S T PQ +R SP P Sbjct: 646 KRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSP 700
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Frame = +2 Query: 146 KLPLXSAPHPSXRSSMGPXKXXP-LGPDHRTGCSCRSCTGRXPYPQHTRRGSPKP 307 K + +P P RSS + P L HR G S T PQ +R SP P Sbjct: 632 KRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSP 686
>MUCAP_PIG (P12021) Apomucin (Mucin core protein) (Fragment)| Length = 1150 Score = 28.9 bits (63), Expect = 3.3 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Frame = +1 Query: 43 NEHDAHCPLPWQAPR--KGTGGSERAPSTIWSKMNL*AASXKCTPSQLTLFDGSXQXXPS 216 NE+ CP P P G G E++P +W+ A KCT ++ D + PS Sbjct: 915 NENKTGCPAPLPPPPVCHGPLGEEKSPGDVWT-----ANCHKCTCTEAKTVDCKPKECPS 969
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 25.4 bits (54), Expect(2) = 3.4 Identities = 8/29 (27%), Positives = 16/29 (55%) Frame = -1 Query: 354 DVYAAXXKLMSEAKKFGFGDPLRVCCGYG 268 D+Y+ K++ + +GF + + CC G Sbjct: 371 DIYSIFSKMLESPEDYGFEEIKKPCCKIG 399 Score = 21.9 bits (45), Expect(2) = 3.4 Identities = 10/31 (32%), Positives = 17/31 (54%) Frame = -2 Query: 233 CGDPVLEGXSCXDPSKSVSWDGVHLXEAAYK 141 C + L+ S + S + WDG+H + AY+ Sbjct: 407 CKERTLKNMS--NASSYLFWDGLHPSQRAYE 435
>OXYR_MYCLE (P52678) Probable hydrogen peroxide-inducible genes activator| Length = 311 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +2 Query: 149 LPLXSAPHPSXRSSMGPXKXXPLGPDHRTGCSCRSCTGR 265 LP +AP S RS +G + P R G + RS +GR Sbjct: 248 LPQSAAPVESVRSKLGLAQFAAPCPGRRIGLAFRSASGR 286
>CRUM2_MOUSE (Q80YA8) Crumbs homolog 2 (Crumbs-like protein 2) (Fragment)| Length = 1248 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/39 (35%), Positives = 16/39 (41%) Frame = -2 Query: 311 SSVLGILCVCVAGTAXGQYNFDKNIRCGDPVLEGXSCXD 195 S G LC C G A + D + P L G SC D Sbjct: 269 SHAAGFLCSCPLGFAGNDCSMDVDECASGPCLNGGSCQD 307
>CRYD_ORYSA (Q651U1) Cryptochrome DASH, chloroplast/mitochondrial precursor| Length = 582 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = -3 Query: 154 RQLTNSSSTRSWTALSPTLRCLCVGPARAKGNAHH 50 R L N + R+W A L CV P + G+ H+ Sbjct: 95 RVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHY 129
>STK19_HUMAN (P49842) Serine/threonine-protein kinase 19 (EC 2.7.11.1) (Protein| RP1) (Protein G11) Length = 368 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/21 (57%), Positives = 13/21 (61%) Frame = -1 Query: 129 PDRGRRSLRPSGAFAWGLPGQ 67 P RGRR RP G A G PG+ Sbjct: 59 PIRGRRGARPGGGDAGGTPGE 79
>JAG1A_BRARE (Q90Y57) Jagged-1a precursor (Jagged1a) (Jagged1)| Length = 1242 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/40 (37%), Positives = 17/40 (42%) Frame = -2 Query: 314 KSSVLGILCVCVAGTAXGQYNFDKNIRCGDPVLEGXSCXD 195 K V G CVC AG A + D + P L G C D Sbjct: 466 KDLVNGYRCVCAAGFAGDRCERDVDECASRPCLNGGRCQD 505
>RIP_HUMAN (Q86UA6) RPA-interacting protein (hRIP)| Length = 219 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Frame = +1 Query: 28 IQNLINEHDAHCPLPWQAPR-KGTGGSERAPSTIWS 132 ++ INEH AHCP P TGG+E S + S Sbjct: 176 LEGSINEHSAHCP---HTPEFSVTGGTEEKSSLLMS 208
>PGPA_HAEIN (P44157) Phosphatidylglycerophosphatase A (EC 3.1.3.27)| Length = 163 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Frame = +3 Query: 96 RRVGESAVHD---LVEDEFVSCLXQVHPIPAXALRWVLARXXL 215 + + VHD +V DEFV + IP+ + +W+LA L Sbjct: 73 KTTADMGVHDHGSIVWDEFVGVFIVLAAIPSLSWQWILAAFAL 115
>SYFB_BARQU (Q6G0Y3) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 804 Score = 27.3 bits (59), Expect = 9.5 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = -2 Query: 98 PVPLRGACQGKGQCASCSLIR 36 P+PL G + KGQ +C+ IR Sbjct: 476 PIPLEGFAEAKGQVLTCTQIR 496
>RBFA_CAUCR (Q9AC30) Ribosome-binding factor A| Length = 149 Score = 27.3 bits (59), Expect = 9.5 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = +3 Query: 69 ALAGPTQRHRRVGESAVHDLVE 134 AL GP+QR R GE H LVE Sbjct: 11 ALTGPSQRQLRAGELIRHALVE 32
>TSNA1_HUMAN (Q96NA8) t-SNARE domain-containing protein 1| Length = 513 Score = 27.3 bits (59), Expect = 9.5 Identities = 16/49 (32%), Positives = 19/49 (38%) Frame = +2 Query: 167 PHPSXRSSMGPXKXXPLGPDHRTGCSCRSCTGRXPYPQHTRRGSPKPNF 313 P P+ ++GP K GP GR P TR KPNF Sbjct: 91 PEPTSSPTIGPRKDSAAGPH-----------GRMAGPSATRAKKRKPNF 128
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 27.3 bits (59), Expect = 9.5 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 1/55 (1%) Frame = +2 Query: 146 KLPLXSAPHPSXRSSMGPXKXXP-LGPDHRTGCSCRSCTGRXPYPQHTRRGSPKP 307 K + +P P RS + P L HR G S T PQ +R SP P Sbjct: 651 KRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSP 705 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,969,583 Number of Sequences: 219361 Number of extensions: 1044607 Number of successful extensions: 2696 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2577 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2693 length of database: 80,573,946 effective HSP length: 93 effective length of database: 60,173,373 effective search space used: 1444160952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)