ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21f16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_478920.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1440 Score = 60.0 bits (30), Expect = 5e-06 Identities = 51/57 (89%), Gaps = 1/57 (1%) Strand = Plus / Minus Query: 229 ccgcaccggatgttcttgtcgaagttgtactggccggncgccgtacccgcaacacac 285 ||||||||||||| | ||||||||||||||| ||| | ||||||||||||| ||||| Sbjct: 1081 ccgcaccggatgtccctgtcgaagttgtactcgcc-gccgccgtacccgcagcacac 1026 Score = 50.1 bits (25), Expect = 0.005 Identities = 86/107 (80%) Strand = Plus / Minus Query: 91 ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagct 150 |||||||| ||||||||||| |||| | |||||| | ||||||| ||| ||| || Sbjct: 1240 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 1181 Query: 151 gcctctgncaagtgcaccccatcccagctnacgctcttcgatgggtc 197 ||||| | ||||||||||| |||||||| |||||| |||| ||||| Sbjct: 1180 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtc 1134
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 60.0 bits (30), Expect = 5e-06 Identities = 51/57 (89%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 229 ccgcaccggatgttcttgtcgaagttgtactggccggncgccgtacccgcaacacac 285 ||||||||||||| | ||||||||||||||| ||| | ||||||||||||| ||||| Sbjct: 23761001 ccgcaccggatgtccctgtcgaagttgtactcgcc-gccgccgtacccgcagcacac 23761056 Score = 50.1 bits (25), Expect = 0.005 Identities = 86/107 (80%) Strand = Plus / Plus Query: 91 ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagct 150 |||||||| ||||||||||| |||| | |||||| | ||||||| ||| ||| || Sbjct: 23760842 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 23760901 Query: 151 gcctctgncaagtgcaccccatcccagctnacgctcttcgatgggtc 197 ||||| | ||||||||||| |||||||| |||||| |||| ||||| Sbjct: 23760902 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtc 23760948
>dbj|AP005437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1113_E01 Length = 73706 Score = 60.0 bits (30), Expect = 5e-06 Identities = 51/57 (89%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 229 ccgcaccggatgttcttgtcgaagttgtactggccggncgccgtacccgcaacacac 285 ||||||||||||| | ||||||||||||||| ||| | ||||||||||||| ||||| Sbjct: 15931 ccgcaccggatgtccctgtcgaagttgtactcgcc-gccgccgtacccgcagcacac 15986 Score = 50.1 bits (25), Expect = 0.005 Identities = 86/107 (80%) Strand = Plus / Plus Query: 91 ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagct 150 |||||||| ||||||||||| |||| | |||||| | ||||||| ||| ||| || Sbjct: 15772 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 15831 Query: 151 gcctctgncaagtgcaccccatcccagctnacgctcttcgatgggtc 197 ||||| | ||||||||||| |||||||| |||||| |||| ||||| Sbjct: 15832 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtc 15878
>dbj|AK071404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092E11, full insert sequence Length = 1439 Score = 60.0 bits (30), Expect = 5e-06 Identities = 51/57 (89%), Gaps = 1/57 (1%) Strand = Plus / Minus Query: 229 ccgcaccggatgttcttgtcgaagttgtactggccggncgccgtacccgcaacacac 285 ||||||||||||| | ||||||||||||||| ||| | ||||||||||||| ||||| Sbjct: 1080 ccgcaccggatgtccctgtcgaagttgtactcgcc-gccgccgtacccgcagcacac 1025 Score = 50.1 bits (25), Expect = 0.005 Identities = 86/107 (80%) Strand = Plus / Minus Query: 91 ggcaccggagggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagct 150 |||||||| ||||||||||| |||| | |||||| | ||||||| ||| ||| || Sbjct: 1239 ggcaccggcgggtcggagagcttgccgccgacgatcagctcgaagacgaacctgttcgcc 1180 Query: 151 gcctctgncaagtgcaccccatcccagctnacgctcttcgatgggtc 197 ||||| | ||||||||||| |||||||| |||||| |||| ||||| Sbjct: 1179 gcctccgtgaagtgcaccccgtcccagctcacgctcctcgacgggtc 1133
>dbj|AB093208.1| Zea mays ache mRNA for hypothetical protein, complete cds Length = 1471 Score = 46.1 bits (23), Expect = 0.076 Identities = 72/89 (80%) Strand = Plus / Minus Query: 100 gggtcggagagagcgccgtccacgatctggtcgaagatgaatttgtaagctgcctctgnc 159 ||||| ||||| |||||| | |||||||||||||| | ||| |||| || ||||| | Sbjct: 1227 gggtccgagagcgcgccggcgacgatctggtcgaacacgaacttgttggcagcctcggtg 1168 Query: 160 aagtgcaccccatcccagctnacgctctt 188 |||||||| || |||||||| || ||||| Sbjct: 1167 aagtgcacgccgtcccagctcaccctctt 1139
>gb|BC064194.1| Xenopus tropicalis 2-4-dienoyl-Coenzyme A reductase 2, peroxisomal, mRNA (cDNA clone IMAGE:5307739), partial cds Length = 1322 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cattgccctttgccctggca 77 |||||||||||||||||||| Sbjct: 1183 cattgccctttgccctggca 1164
>emb|AL359637.14| Human DNA sequence from clone RP11-484M8 on chromosome 13, complete sequence Length = 174135 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 tctaattaatgaacatgatg 55 |||||||||||||||||||| Sbjct: 86289 tctaattaatgaacatgatg 86308
>emb|AL161549.2|ATCHRIV49 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 49 Length = 199075 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tggaaaaataatcctacatt 30 |||||||||||||||||||| Sbjct: 9283 tggaaaaataatcctacatt 9264
>emb|AL021710.1|ATF28J12 Arabidopsis thaliana DNA chromosome 4, BAC clone F28J12 (ESSAII project) Length = 110102 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tggaaaaataatcctacatt 30 |||||||||||||||||||| Sbjct: 90461 tggaaaaataatcctacatt 90442
>gb|AC149152.3| Xenopus tropicalis clone ISB-217F3, complete sequence Length = 53218 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 cattgccctttgccctggca 77 |||||||||||||||||||| Sbjct: 16968 cattgccctttgccctggca 16987 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,047,103 Number of Sequences: 3902068 Number of extensions: 2047103 Number of successful extensions: 36441 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 36405 Number of HSP's gapped (non-prelim): 27 length of query: 354 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 332 effective length of database: 17,147,199,772 effective search space: 5692870324304 effective search space used: 5692870324304 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
