>TPT_MAIZE (P49133) Triose phosphate/phosphate translocator, chloroplast|
           precursor (cTPT)
          Length = 409

 Score =  127 bits (318), Expect = 1e-29
 Identities = 65/81 (80%), Positives = 69/81 (85%)
 Frame = -3

Query: 245 PQLMQYGLNDAIAKVGLTKFVSDLFLVGLFYHLYNQIATNTLERVAPLTHAVGNVLKRXX 66
           P+LMQ+G +DAIAKVGLTKFVSDLFLVGLFYHLYNQIATNTLERVAPLTHAVGNVLKR  
Sbjct: 303 PKLMQHGFSDAIAKVGLTKFVSDLFLVGLFYHLYNQIATNTLERVAPLTHAVGNVLKRVF 362

Query: 65  XXXXXXXXXGNKITTQTGIGT 3
                    GNKI+TQTGIGT
Sbjct: 363 VIGFSIIVFGNKISTQTGIGT 383

>TPT_SOLTU (P29463) Triose phosphate/phosphate translocator, chloroplast|
           precursor (cTPT) (E29)
          Length = 414

 Score =  124 bits (312), Expect = 5e-29
 Identities = 62/81 (76%), Positives = 68/81 (83%)
 Frame = -3

Query: 245 PQLMQYGLNDAIAKVGLTKFVSDLFLVGLFYHLYNQIATNTLERVAPLTHAVGNVLKRXX 66
           PQL+Q+G NDAIAKVGLTKFV+DLF VG+FYHLYNQ+ATNTLERVAPLTHAVGNVLKR  
Sbjct: 307 PQLLQHGFNDAIAKVGLTKFVTDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKRVF 366

Query: 65  XXXXXXXXXGNKITTQTGIGT 3
                    GNKI+TQTGIGT
Sbjct: 367 VIGFSIVIFGNKISTQTGIGT 387

>TPT_SPIOL (P11869) Triose phosphate/phosphate translocator, chloroplast|
           precursor (cTPT) (p36) (E29)
          Length = 404

 Score =  122 bits (307), Expect = 2e-28
 Identities = 61/81 (75%), Positives = 67/81 (82%)
 Frame = -3

Query: 245 PQLMQYGLNDAIAKVGLTKFVSDLFLVGLFYHLYNQIATNTLERVAPLTHAVGNVLKRXX 66
           PQLM++G NDAIAKVGLTKF+SDLF VG+FYHLYNQ+ATNTLERVAPLTHAVGNVLKR  
Sbjct: 297 PQLMKHGFNDAIAKVGLTKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVF 356

Query: 65  XXXXXXXXXGNKITTQTGIGT 3
                    GNKI+TQT IGT
Sbjct: 357 VIGFSIIAFGNKISTQTAIGT 377

>TPT1_BRAOB (P52177) Triose phosphate/phosphate translocator, chloroplast|
           precursor (cTPT)
          Length = 407

 Score =  122 bits (307), Expect = 2e-28
 Identities = 60/81 (74%), Positives = 68/81 (83%)
 Frame = -3

Query: 245 PQLMQYGLNDAIAKVGLTKFVSDLFLVGLFYHLYNQIATNTLERVAPLTHAVGNVLKRXX 66
           PQL+++G NDAIAKVG+TKF+SDLF VG+FYHLYNQ+ATNTLERVAPLTHAVGNVLKR  
Sbjct: 300 PQLLKHGFNDAIAKVGMTKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVF 359

Query: 65  XXXXXXXXXGNKITTQTGIGT 3
                    GNKI+TQTGIGT
Sbjct: 360 VIGFSIVIFGNKISTQTGIGT 380

>TPT_FLATR (P49132) Triose phosphate/phosphate translocator, chloroplast|
           precursor (cTPT)
          Length = 407

 Score =  119 bits (297), Expect = 3e-27
 Identities = 59/81 (72%), Positives = 66/81 (81%)
 Frame = -3

Query: 245 PQLMQYGLNDAIAKVGLTKFVSDLFLVGLFYHLYNQIATNTLERVAPLTHAVGNVLKRXX 66
           PQL+++G NDAIAKVG+ KF+SDLF VG+FYHLYNQIATNTLERVAPLTHAVGNVLKR  
Sbjct: 300 PQLLKHGFNDAIAKVGMIKFISDLFWVGMFYHLYNQIATNTLERVAPLTHAVGNVLKRVF 359

Query: 65  XXXXXXXXXGNKITTQTGIGT 3
                    GNKI+TQT IGT
Sbjct: 360 VIGFSIIVFGNKISTQTAIGT 380

>TPT_PEA (P21727) Triose phosphate/phosphate translocator, chloroplast|
           precursor (cTPT) (p36) (E30)
          Length = 402

 Score =  118 bits (296), Expect = 4e-27
 Identities = 60/81 (74%), Positives = 65/81 (80%)
 Frame = -3

Query: 245 PQLMQYGLNDAIAKVGLTKFVSDLFLVGLFYHLYNQIATNTLERVAPLTHAVGNVLKRXX 66
           P L++ G NDAIAKVGL KFVSDLF VG+FYHLYNQ+ATNTLERVAPLTHAVGNVLKR  
Sbjct: 295 PTLLKTGFNDAIAKVGLVKFVSDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKRVF 354

Query: 65  XXXXXXXXXGNKITTQTGIGT 3
                    GNKI+TQTGIGT
Sbjct: 355 VIGFSIIIFGNKISTQTGIGT 375

>TPT_FLAPR (P49131) Triose phosphate/phosphate translocator, chloroplast|
           precursor (cTPT)
          Length = 408

 Score =  116 bits (290), Expect = 2e-26
 Identities = 57/81 (70%), Positives = 66/81 (81%)
 Frame = -3

Query: 245 PQLMQYGLNDAIAKVGLTKFVSDLFLVGLFYHLYNQIATNTLERVAPLTHAVGNVLKRXX 66
           PQL+++G +DAIAKVG+TKF+SDLF VG+FYHLYNQ+A NTLERVAPLTHAVGNVLKR  
Sbjct: 301 PQLLKHGFSDAIAKVGMTKFISDLFWVGMFYHLYNQLAINTLERVAPLTHAVGNVLKRVF 360

Query: 65  XXXXXXXXXGNKITTQTGIGT 3
                    GNKI+TQT IGT
Sbjct: 361 VIGFSIIVFGNKISTQTAIGT 381

>GPT2_ARATH (Q94B38) Glucose-6-phosphate/phosphate translocator 2, chloroplast|
           precursor
          Length = 388

 Score = 50.8 bits (120), Expect = 9e-07
 Identities = 23/58 (39%), Positives = 40/58 (68%)
 Frame = -3

Query: 245 PQLMQYGLNDAIAKVGLTKFVSDLFLVGLFYHLYNQIATNTLERVAPLTHAVGNVLKR 72
           PQ+   G  +A+++VG   FV  +    +FYHLYNQ++  +L++++PLT ++GN +KR
Sbjct: 294 PQMWAAGWQNAVSQVG-PNFVWWVVAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKR 350

>GPT1_ARATH (Q9M5A9) Glucose-6-phosphate/phosphate translocator 1, chloroplast|
           precursor
          Length = 388

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 25/58 (43%), Positives = 39/58 (67%)
 Frame = -3

Query: 245 PQLMQYGLNDAIAKVGLTKFVSDLFLVGLFYHLYNQIATNTLERVAPLTHAVGNVLKR 72
           PQ+   G   A+A VG  +FV  +    +FYHLYNQ++  +L++++PLT +VGN +KR
Sbjct: 294 PQMWVDGWQTALATVG-PQFVWWVVAQSVFYHLYNQVSYMSLDQISPLTFSVGNTMKR 350

>TPT2_BRAOB (P52178) Triose phosphate/phosphate translocator, non-green|
           plastid, chloroplast precursor (CTPT)
          Length = 402

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -3

Query: 209 AKVGLTKFVSDLFLVGLFYHLYNQIATNTLERVAPLTHAVGNVLKRXXXXXXXXXXXGNK 30
           A V + +  +   +  L +H Y Q++   L RV+P+TH+VGN +KR              
Sbjct: 311 AGVNVQQIYTKSLIAALCFHAYQQVSYMILARVSPVTHSVGNCVKRVVVIVSSVIFFKTP 370

Query: 29  ITTQTGIGT 3
           ++     GT
Sbjct: 371 VSPVNAFGT 379

>RPH1_YEAST (P39956) DNA damage-responsive transcriptional repressor RPH1|
          Length = 796

 Score = 30.8 bits (68), Expect = 0.97
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +3

Query: 12  SSLCGNFVAKNDDRETNDENPFQHIANSMCQRGHPLQSVCSNLIIEMVEQSHQE 173
           +S+ G     ND +  + E P    AN + ++  P+++  SNLI+  V  + QE
Sbjct: 619 TSVLGPLSDTNDIKTPHPERPNHKTANRILKKESPVETSKSNLILSKVASTRQE 672

>PCSK5_HUMAN (Q92824) Proprotein convertase subtilisin/kexin type 5 precursor|
           (EC 3.4.21.-) (Proprotein convertase PC5)
           (Subtilisin/kexin-like protease PC5) (PC6) (hPC6)
          Length = 913

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 228 WIKRCNCKSRSDKICIRSFPGGIVLP 151
           W  RC C  R D +C+ +  GG +LP
Sbjct: 3   WESRCCCPGRLDLLCVLALLGGCLLP 28

>OTC_YEAST (P05150) Ornithine carbamoyltransferase (EC 2.1.3.3) (OTCase)|
           (Ornithine transcarbamylase)
          Length = 338

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 84  IANSMCQRGHPLQSVCSNLII 146
           I NS+C + HPLQ++C  L I
Sbjct: 136 IINSLCDKFHPLQAICDLLTI 156

>NUDT6_XENLA (P13420) Nucleoside diphosphate-linked moiety X motif 6 (Nudix|
           motif 6) (Protein GFG)
          Length = 217

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -3

Query: 242 QLMQYGLNDAIAKVGLTKFVSDLFLVGLFYHLYNQIATNTLERVAPL 102
           +L+ YG N+    V LT         GLFY LY++    T E  A L
Sbjct: 170 KLLLYGYNEGFHLVDLTMRTFPAVYSGLFYSLYHKELPETYEGSATL 216

>THIC_PROMM (Q7V906) Thiamine biosynthesis protein thiC|
          Length = 459

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 54  ETNDENPFQHIANSMCQRGHPLQSVCSNLIIE 149
           E  DE+ F HI    CQ+G   Q++ + L+IE
Sbjct: 150 EQLDEDDFLHIIEKHCQQGVDYQTIHAGLLIE 181

>THIC_SYNPX (Q7U9W2) Thiamine biosynthesis protein thiC|
          Length = 483

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 54  ETNDENPFQHIANSMCQRGHPLQSVCSNLIIE 149
           E  DE+ F HI    CQ+G   Q++ + L+IE
Sbjct: 167 EKLDEDDFLHIIEKHCQQGVDYQTIHAGLLIE 198

>NPAS2_MOUSE (P97460) Neuronal PAS domain protein 2 (Neuronal PAS2)|
          Length = 816

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 135 CYKHFGAGGPSDTCCWQCVEKGFRHWFLYHHFWQQNYHTDWN 10
           C++H    G   +CC++ + KG +  +L  H++   YH  WN
Sbjct: 299 CHQHLMQFGKGKSCCYRFLTKGQQWIWLQTHYY-ITYH-QWN 338

>NPAS2_HUMAN (Q99743) Neuronal PAS domain protein 2 (Neuronal PAS2) (Member of|
           PAS protein 4) (MOP4)
          Length = 824

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 135 CYKHFGAGGPSDTCCWQCVEKGFRHWFLYHHFWQQNYHTDWN 10
           C++H    G   +CC++ + KG +  +L  H++   YH  WN
Sbjct: 299 CHQHLMQFGTGKSCCYRFLTKGQQWIWLQTHYY-ITYH-QWN 338


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,353,546
Number of Sequences: 219361
Number of extensions: 634462
Number of successful extensions: 1889
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1889
length of database: 80,573,946
effective HSP length: 57
effective length of database: 68,070,369
effective search space used: 1633688856
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)