ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 61 7e-10
2FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 52 5e-07
3RIP_RAT (Q4G2Y1) RPA-interacting protein 30 2.2
4CCW12_YEAST (Q12127) Covalently-linked cell wall protein 12 prec... 28 6.3

>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 61.2 bits (147), Expect = 7e-10
 Identities = 32/67 (47%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
 Frame = -2

Query: 242 YNFXKNIRCGDPVLXGX-------SCXXPSKSVSWDGVHLXEAACKFIFDXIVDGALSDP 84
           YNF     CGD V           SC  PS  V+WDG H  EAA ++ FD I  GA SDP
Sbjct: 312 YNFSVTAPCGDTVTADDGTKIVVGSCACPSVRVNWDGAHYTEAANEYFFDQISTGAFSDP 371

Query: 83  PVPLRGA 63
           PVPL  A
Sbjct: 372 PVPLNMA 378



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>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 26/55 (47%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
 Frame = -2

Query: 242 YNFXKNIRCG-------DPVLXGXSCXXPSKSVSWDGVHLXEAACKFIFDXIVDG 99
           YN+ K I CG         V  G  C  P K+V WDGVH  +AA KFIFD I  G
Sbjct: 310 YNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQAANKFIFDKIAPG 364



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>RIP_RAT (Q4G2Y1) RPA-interacting protein|
          Length = 219

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 13  IQNLINEHDAHCP-LPXXAPRKGTGGSERAPSTXWS 117
           ++  +NEH AHCP +P  +    TGG+E  PS   S
Sbjct: 176 LEGNVNEHSAHCPHIPEFSV---TGGTEEKPSLLMS 208



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>CCW12_YEAST (Q12127) Covalently-linked cell wall protein 12 precursor (Protein|
           Alpha0.6)
          Length = 133

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 13  IQNLINEHDAHCPLPXXAPRKGTGGSERAPSTXWSKMNLQAA 138
           + ++I ++   CPL   AP+ GT  +    ST   K    AA
Sbjct: 61  VDDVITQYTTWCPLTTEAPKNGTSTAAPVTSTEAPKNTTSAA 102


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,668,980
Number of Sequences: 219361
Number of extensions: 444892
Number of successful extensions: 876
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 80,573,946
effective HSP length: 56
effective length of database: 68,289,730
effective search space used: 1638953520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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