Clone Name | rbasd21f04 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_478920.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1440 Score = 50.1 bits (25), Expect = 0.003 Identities = 34/37 (91%) Strand = Plus / Minus Query: 145 aagtgcaccccatcccagctcacgctcttcgatgggt 181 ||||||||||| ||||||||||||||| |||| |||| Sbjct: 1171 aagtgcaccccgtcccagctcacgctcctcgacgggt 1135
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 50.1 bits (25), Expect = 0.003 Identities = 34/37 (91%) Strand = Plus / Plus Query: 145 aagtgcaccccatcccagctcacgctcttcgatgggt 181 ||||||||||| ||||||||||||||| |||| |||| Sbjct: 23760911 aagtgcaccccgtcccagctcacgctcctcgacgggt 23760947
>dbj|AP005437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1113_E01 Length = 73706 Score = 50.1 bits (25), Expect = 0.003 Identities = 34/37 (91%) Strand = Plus / Plus Query: 145 aagtgcaccccatcccagctcacgctcttcgatgggt 181 ||||||||||| ||||||||||||||| |||| |||| Sbjct: 15841 aagtgcaccccgtcccagctcacgctcctcgacgggt 15877
>dbj|AK071404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092E11, full insert sequence Length = 1439 Score = 50.1 bits (25), Expect = 0.003 Identities = 34/37 (91%) Strand = Plus / Minus Query: 145 aagtgcaccccatcccagctcacgctcttcgatgggt 181 ||||||||||| ||||||||||||||| |||| |||| Sbjct: 1170 aagtgcaccccgtcccagctcacgctcctcgacgggt 1134
>gb|AC127250.3| Mus musculus BAC clone RP24-482H23 from chromosome 3, complete sequence Length = 136942 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 agatgaatttgcaagctgcc 138 |||||||||||||||||||| Sbjct: 72301 agatgaatttgcaagctgcc 72320
>emb|AL359637.14| Human DNA sequence from clone RP11-484M8 on chromosome 13, complete sequence Length = 174135 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 tctaattaatgaacatgatg 40 |||||||||||||||||||| Sbjct: 86289 tctaattaatgaacatgatg 86308
>dbj|AB093208.1| Zea mays ache mRNA for hypothetical protein, complete cds Length = 1471 Score = 40.1 bits (20), Expect = 3.1 Identities = 82/104 (78%) Strand = Plus / Minus Query: 85 gggtcggagagagcgccgtccacgatntggtcgaagatgaatttgcaagctgcctctgnc 144 ||||| ||||| |||||| | ||||| |||||||| | ||| ||| || ||||| | Sbjct: 1227 gggtccgagagcgcgccggcgacgatctggtcgaacacgaacttgttggcagcctcggtg 1168 Query: 145 aagtgcaccccatcccagctcacgctcttcgatgggtnctngca 188 |||||||| || ||||||||||| ||||| || |||| || ||| Sbjct: 1167 aagtgcacgccgtcccagctcaccctcttggaggggttctcgca 1124
>emb|AL837518.17| Mouse DNA sequence from clone RP23-312M16 on chromosome 1, complete sequence Length = 187003 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 agatgaatttgcaagctgcc 138 |||||||||||||||||||| Sbjct: 77644 agatgaatttgcaagctgcc 77663
>gb|AC163671.5| Mus musculus BAC clone RP23-21K2 from chromosome 3, complete sequence Length = 215382 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 agatgaatttgcaagctgcc 138 |||||||||||||||||||| Sbjct: 188777 agatgaatttgcaagctgcc 188758 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,124,431 Number of Sequences: 3902068 Number of extensions: 1124431 Number of successful extensions: 39321 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 39293 Number of HSP's gapped (non-prelim): 29 length of query: 243 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 221 effective length of database: 17,147,199,772 effective search space: 3789531149612 effective search space used: 3789531149612 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)