ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_478920.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.003
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
3dbj|AP005437.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.003
4dbj|AK071404.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.003
5gb|AC127250.3| Mus musculus BAC clone RP24-482H23 from chromosom... 40 3.1
6emb|AL359637.14| Human DNA sequence from clone RP11-484M8 on chr... 40 3.1
7dbj|AB093208.1| Zea mays ache mRNA for hypothetical protein, com... 40 3.1
8emb|AL837518.17| Mouse DNA sequence from clone RP23-312M16 on ch... 40 3.1
9gb|AC163671.5| Mus musculus BAC clone RP23-21K2 from chromosome ... 40 3.1

>ref|XM_478920.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1440

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 145  aagtgcaccccatcccagctcacgctcttcgatgggt 181
            ||||||||||| ||||||||||||||| |||| ||||
Sbjct: 1171 aagtgcaccccgtcccagctcacgctcctcgacgggt 1135



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                     
Query: 145      aagtgcaccccatcccagctcacgctcttcgatgggt 181
                ||||||||||| ||||||||||||||| |||| ||||
Sbjct: 23760911 aagtgcaccccgtcccagctcacgctcctcgacgggt 23760947



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>dbj|AP005437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1113_E01
          Length = 73706

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                  
Query: 145   aagtgcaccccatcccagctcacgctcttcgatgggt 181
             ||||||||||| ||||||||||||||| |||| ||||
Sbjct: 15841 aagtgcaccccgtcccagctcacgctcctcgacgggt 15877



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>dbj|AK071404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023092E11, full
            insert sequence
          Length = 1439

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 145  aagtgcaccccatcccagctcacgctcttcgatgggt 181
            ||||||||||| ||||||||||||||| |||| ||||
Sbjct: 1170 aagtgcaccccgtcccagctcacgctcctcgacgggt 1134



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>gb|AC127250.3| Mus musculus BAC clone RP24-482H23 from chromosome 3, complete sequence
          Length = 136942

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   agatgaatttgcaagctgcc 138
             ||||||||||||||||||||
Sbjct: 72301 agatgaatttgcaagctgcc 72320



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>emb|AL359637.14| Human DNA sequence from clone RP11-484M8 on chromosome 13, complete
             sequence
          Length = 174135

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    tctaattaatgaacatgatg 40
             ||||||||||||||||||||
Sbjct: 86289 tctaattaatgaacatgatg 86308



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>dbj|AB093208.1| Zea mays ache mRNA for hypothetical protein, complete cds
          Length = 1471

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 82/104 (78%)
 Strand = Plus / Minus

                                                                        
Query: 85   gggtcggagagagcgccgtccacgatntggtcgaagatgaatttgcaagctgcctctgnc 144
            ||||| ||||| |||||| | ||||| |||||||| | ||| |||   || ||||| |  
Sbjct: 1227 gggtccgagagcgcgccggcgacgatctggtcgaacacgaacttgttggcagcctcggtg 1168

                                                        
Query: 145  aagtgcaccccatcccagctcacgctcttcgatgggtnctngca 188
            |||||||| || ||||||||||| ||||| || |||| || |||
Sbjct: 1167 aagtgcacgccgtcccagctcaccctcttggaggggttctcgca 1124



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>emb|AL837518.17| Mouse DNA sequence from clone RP23-312M16 on chromosome 1, complete
             sequence
          Length = 187003

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   agatgaatttgcaagctgcc 138
             ||||||||||||||||||||
Sbjct: 77644 agatgaatttgcaagctgcc 77663



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>gb|AC163671.5| Mus musculus BAC clone RP23-21K2 from chromosome 3, complete sequence
          Length = 215382

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 119    agatgaatttgcaagctgcc 138
              ||||||||||||||||||||
Sbjct: 188777 agatgaatttgcaagctgcc 188758


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,124,431
Number of Sequences: 3902068
Number of extensions: 1124431
Number of successful extensions: 39321
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 39293
Number of HSP's gapped (non-prelim): 29
length of query: 243
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 221
effective length of database: 17,147,199,772
effective search space: 3789531149612
effective search space used: 3789531149612
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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