ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20p24 |
|---|---|
| Clone Library Name | barley_pub |
>IF5A2_ARATH (Q93VP3) Eukaryotic translation initiation factor 5A-2 (eIF-5A-2)| Length = 159 Score = 49.3 bits (116), Expect = 3e-06 Identities = 20/28 (71%), Positives = 26/28 (92%) Frame = -2 Query: 253 DGKDLILSVXSAMGEEQICXVKEIGGGK 170 +GKD+++SV S+MGEEQIC VKE+GGGK Sbjct: 132 EGKDIVVSVMSSMGEEQICAVKEVGGGK 159
>IF5A_DIACA (Q9AXQ7) Eukaryotic translation initiation factor 5A (eIF-5A)| Length = 160 Score = 46.6 bits (109), Expect = 2e-05 Identities = 21/27 (77%), Positives = 23/27 (85%) Frame = -2 Query: 250 GKDLILSVXSAMGEEQICXVKEIGGGK 170 GKDLILSV AMGEEQIC VK++ GGK Sbjct: 134 GKDLILSVMCAMGEEQICAVKDVSGGK 160
>IF5A4_LYCES (Q9AXQ3) Eukaryotic translation initiation factor 5A-4 (eIF-5A-4)| Length = 160 Score = 45.1 bits (105), Expect = 5e-05 Identities = 20/25 (80%), Positives = 23/25 (92%) Frame = -2 Query: 253 DGKDLILSVXSAMGEEQICXVKEIG 179 +GKDL+LSV SAMGEEQIC VK+IG Sbjct: 133 EGKDLVLSVMSAMGEEQICAVKDIG 157
>IF5A1_SOLTU (P56333) Eukaryotic translation initiation factor 5A-1/2| (eIF-5A-1/2) (eIF-4D) Length = 160 Score = 45.1 bits (105), Expect = 5e-05 Identities = 20/25 (80%), Positives = 23/25 (92%) Frame = -2 Query: 253 DGKDLILSVXSAMGEEQICXVKEIG 179 +GKDL+LSV SAMGEEQIC VK+IG Sbjct: 133 EGKDLVLSVMSAMGEEQICAVKDIG 157
>IF5A1_MEDSA (P26564) Eukaryotic translation initiation factor 5A-1 (eIF-5A-1)| (eIF-4D) Length = 161 Score = 45.1 bits (105), Expect = 5e-05 Identities = 19/26 (73%), Positives = 24/26 (92%) Frame = -2 Query: 253 DGKDLILSVXSAMGEEQICXVKEIGG 176 +GKDL++SV SAMGEEQIC +K+IGG Sbjct: 134 EGKDLVVSVMSAMGEEQICALKDIGG 159
>IF5A5_SOLTU (P56337) Eukaryotic translation initiation factor 5A-5 (eIF-5A-5)| (eIF-4D) Length = 159 Score = 44.3 bits (103), Expect = 8e-05 Identities = 19/25 (76%), Positives = 23/25 (92%) Frame = -2 Query: 253 DGKDLILSVXSAMGEEQICXVKEIG 179 +GKDL+LSV SAMGEEQIC +K+IG Sbjct: 133 EGKDLVLSVMSAMGEEQICGIKDIG 157
>IF5A2_MEDSA (Q945F4) Eukaryotic translation initiation factor 5A-2 (eIF-5A-2)| Length = 159 Score = 44.3 bits (103), Expect = 8e-05 Identities = 19/25 (76%), Positives = 23/25 (92%) Frame = -2 Query: 253 DGKDLILSVXSAMGEEQICXVKEIG 179 DGKDL++SV SAMGEEQIC +K+IG Sbjct: 133 DGKDLVVSVMSAMGEEQICALKDIG 157
>IF5A1_LYCES (Q9AXQ6) Eukaryotic translation initiation factor 5A-1 (eIF-5A-1)| Length = 159 Score = 44.3 bits (103), Expect = 8e-05 Identities = 19/25 (76%), Positives = 23/25 (92%) Frame = -2 Query: 253 DGKDLILSVXSAMGEEQICXVKEIG 179 +GKDL+LSV SAMGEEQIC +K+IG Sbjct: 133 EGKDLVLSVMSAMGEEQICGIKDIG 157
>IF5A1_TOBAC (P69040) Eukaryotic translation initiation factor 5A-1 (eIF-5A-1)| (eIF-4D) Length = 159 Score = 43.9 bits (102), Expect = 1e-04 Identities = 18/25 (72%), Positives = 23/25 (92%) Frame = -2 Query: 253 DGKDLILSVXSAMGEEQICXVKEIG 179 +GKDL+LSV SAMGEEQIC +K++G Sbjct: 133 EGKDLVLSVMSAMGEEQICGIKDVG 157
>IF5A1_NICPL (P69039) Eukaryotic translation initiation factor 5A-1 (eIF-5A-1)| (eIF-4D) Length = 159 Score = 43.9 bits (102), Expect = 1e-04 Identities = 18/25 (72%), Positives = 23/25 (92%) Frame = -2 Query: 253 DGKDLILSVXSAMGEEQICXVKEIG 179 +GKDL+LSV SAMGEEQIC +K++G Sbjct: 133 EGKDLVLSVMSAMGEEQICGIKDVG 157
>IF5A_SENVE (Q9SC12) Eukaryotic translation initiation factor 5A (eIF-5A)| Length = 159 Score = 42.7 bits (99), Expect = 2e-04 Identities = 18/25 (72%), Positives = 23/25 (92%) Frame = -2 Query: 253 DGKDLILSVXSAMGEEQICXVKEIG 179 +GKDL++SV SAMGEEQIC +K+IG Sbjct: 133 EGKDLVVSVMSAMGEEQICALKDIG 157
>IF5A2_NICPL (P24922) Eukaryotic translation initiation factor 5A-2 (eIF-5A-2)| (eIF-4D) Length = 159 Score = 42.7 bits (99), Expect = 2e-04 Identities = 18/25 (72%), Positives = 23/25 (92%) Frame = -2 Query: 253 DGKDLILSVXSAMGEEQICXVKEIG 179 +GKDL++SV SAMGEEQIC +K+IG Sbjct: 133 EGKDLVVSVMSAMGEEQICALKDIG 157
>IF5A3_ARATH (Q9C505) Eukaryotic translation initiation factor 5A-3 (eIF-5A-3)| Length = 158 Score = 41.6 bits (96), Expect = 5e-04 Identities = 16/25 (64%), Positives = 23/25 (92%) Frame = -2 Query: 253 DGKDLILSVXSAMGEEQICXVKEIG 179 +GKD+++SV SAMGEEQ+C +KE+G Sbjct: 132 EGKDIVVSVMSAMGEEQMCALKEVG 156
>IF5A_MANES (Q9AXJ4) Eukaryotic translation initiation factor 5A (eIF-5A)| Length = 160 Score = 41.2 bits (95), Expect = 7e-04 Identities = 17/25 (68%), Positives = 23/25 (92%) Frame = -2 Query: 253 DGKDLILSVXSAMGEEQICXVKEIG 179 +GKDL++SV SAMGEE+IC +K+IG Sbjct: 133 EGKDLVVSVMSAMGEERICSLKDIG 157
>IF5A_MAIZE (P80639) Eukaryotic translation initiation factor 5A (eIF-5A)| (eIF-4D) Length = 160 Score = 40.4 bits (93), Expect = 0.001 Identities = 16/24 (66%), Positives = 22/24 (91%) Frame = -2 Query: 250 GKDLILSVXSAMGEEQICXVKEIG 179 GKDL+++V SAMGEEQIC +K++G Sbjct: 135 GKDLVVTVQSAMGEEQICALKDVG 158
>IF5A1_ARATH (Q9XI91) Eukaryotic translation initiation factor 5A-1 (eIF-5A-1)| Length = 158 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/25 (72%), Positives = 22/25 (88%) Frame = -2 Query: 253 DGKDLILSVXSAMGEEQICXVKEIG 179 DGKDL++SV SAMGEEQI +K+IG Sbjct: 132 DGKDLVVSVMSAMGEEQINALKDIG 156
>IF5A3_SOLTU (P56335) Eukaryotic translation initiation factor 5A-3 (eIF-5A-3)| (eIF-4D) Length = 160 Score = 38.9 bits (89), Expect = 0.004 Identities = 17/25 (68%), Positives = 22/25 (88%) Frame = -2 Query: 253 DGKDLILSVXSAMGEEQICXVKEIG 179 +GKDL++SV SAMGEEQI +K+IG Sbjct: 133 EGKDLVVSVMSAMGEEQINAIKDIG 157
>IF5A2_LYCES (Q9AXQ5) Eukaryotic translation initiation factor 5A-2 (eIF-5A-2)| Length = 160 Score = 38.9 bits (89), Expect = 0.004 Identities = 17/25 (68%), Positives = 22/25 (88%) Frame = -2 Query: 253 DGKDLILSVXSAMGEEQICXVKEIG 179 +GKDL++SV SAMGEEQI VK++G Sbjct: 133 EGKDLVVSVMSAMGEEQINAVKDVG 157
>IF5A4_SOLTU (P56336) Eukaryotic translation initiation factor 5A-4 (eIF-5A-4)| (eIF-4D) Length = 159 Score = 38.1 bits (87), Expect = 0.006 Identities = 17/25 (68%), Positives = 22/25 (88%) Frame = -2 Query: 253 DGKDLILSVXSAMGEEQICXVKEIG 179 +GKDL++SV SAMGEEQI +K+IG Sbjct: 133 EGKDLVVSVMSAMGEEQINALKDIG 157
>IF5A3_LYCES (Q9AXQ4) Eukaryotic translation initiation factor 5A-3 (eIF-5A-3)| Length = 159 Score = 38.1 bits (87), Expect = 0.006 Identities = 17/25 (68%), Positives = 22/25 (88%) Frame = -2 Query: 253 DGKDLILSVXSAMGEEQICXVKEIG 179 +GKDL++SV SAMGEEQI +K+IG Sbjct: 133 EGKDLVVSVMSAMGEEQINALKDIG 157
>IF5A_CANAL (O94083) Eukaryotic translation initiation factor 5A (eIF-5A)| (eIF-4D) Length = 157 Score = 30.4 bits (67), Expect = 1.3 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -2 Query: 253 DGKDLILSVXSAMGEEQICXVKEIGGG 173 +GKDLI+++ SAMGEE KE G Sbjct: 129 EGKDLIVTIISAMGEEAAISYKEAPKG 155
>GSPL_XANCP (P34027) General secretion pathway protein L| Length = 373 Score = 29.6 bits (65), Expect = 2.1 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = -1 Query: 182 RWWQVSSGAWLPSXXTWYLVL 120 RWWQ S AWLP W L L Sbjct: 24 RWWQQSLLAWLPQRWQWQLGL 44
>IF5A2_YEAST (P23301) Eukaryotic translation initiation factor 5A-2 (eIF-5A-2)| (eIF-4D) (Hypusine-containing protein HP2) Length = 156 Score = 28.9 bits (63), Expect = 3.6 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = -2 Query: 253 DGKDLILSVXSAMGEEQICXVKE 185 +GKDL++++ SAMGEE KE Sbjct: 129 EGKDLMVTIISAMGEEAAISFKE 151
>IF5A1_YEAST (P19211) Eukaryotic translation initiation factor 5A-1 (eIF-5A-1)| (eIF-4D) (Hypusine-containing protein HP1) Length = 156 Score = 28.9 bits (63), Expect = 3.6 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = -2 Query: 253 DGKDLILSVXSAMGEEQICXVKE 185 +GKDL++++ SAMGEE KE Sbjct: 129 EGKDLMVTIISAMGEEAAISFKE 151
>VEGFC_RAT (O35757) Vascular endothelial growth factor C precursor (VEGF-C)| (Vascular endothelial growth factor-related protein) (VRP) (Flt4 ligand) (Flt4-L) Length = 415 Score = 28.9 bits (63), Expect = 3.6 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%) Frame = +3 Query: 90 CLCMCISNTQK--------H*IPSXXARQPCT--AAYLPPPISFTXQIC 206 C C C NTQK H R+PCT + P +SF+ ++C Sbjct: 354 CACECTENTQKCFLKGKKFHHQTCSCYRRPCTNRLKHCDPGLSFSEEVC 402
>IF5A2_SCHPO (Q9UST4) Eukaryotic translation initiation factor 5A-2 (eIF-5A-2)| Length = 157 Score = 28.5 bits (62), Expect = 4.8 Identities = 12/16 (75%), Positives = 15/16 (93%) Frame = -2 Query: 253 DGKDLILSVXSAMGEE 206 +GKDLI++V SAMGEE Sbjct: 131 EGKDLIITVVSAMGEE 146
>CN115_HUMAN (Q9H8Y1) Protein C14orf115| Length = 702 Score = 28.1 bits (61), Expect = 6.2 Identities = 13/34 (38%), Positives = 15/34 (44%) Frame = +1 Query: 148 GNHAPLLTCHHRFPSQXRSVLHPWQTSQTGSGPC 249 G PL RFP RS + W+ GSG C Sbjct: 327 GGVVPLQQFLQRFPEISRSTYYAWKHELLGSGTC 360
>LEPA_PELUB (Q4FNH3) GTP-binding protein lepA| Length = 602 Score = 28.1 bits (61), Expect = 6.2 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = +1 Query: 55 WIK--LVSPNRYLDAYVCVSQTPRSTRYQVXQLGNHAPL 165 WIK +++P++YL A + V Q R + + GN A L Sbjct: 406 WIKATIITPDQYLGAIIKVCQDKRGVQTNLSYSGNRAVL 444
>POLS2_MOUSE (Q5K2P8) Polyserase-2 precursor (EC 3.4.21.-) (Polyserine protease| 2) (Protease serine 36) Length = 849 Score = 28.1 bits (61), Expect = 6.2 Identities = 23/79 (29%), Positives = 28/79 (35%), Gaps = 3/79 (3%) Frame = +1 Query: 22 PRAFGVKNTQ-IWIKLVSPNRYLDAYVCVSQTPRSTRYQVXQLGNHAPLLTCHHRFPSQX 198 PRAF T +WI V+ YL+ + P + H C R S Sbjct: 531 PRAFSPMQTHGLWISHVTQGAYLEDQLTWDWGPEGEETEKQTCPPHTEHGACGLRPQSTP 590 Query: 199 RSVLHPWQTS--QTGSGPC 249 VL PW T TG C Sbjct: 591 AGVLWPWLTEVHVTGDRVC 609
>ADPPT_MOUSE (Q9CQF6) L-aminoadipate-semialdehyde| dehydrogenase-phosphopantetheinyl transferase (EC 2.7.8.-) (4'-phosphopantetheinyl transferase) (Alpha-aminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase) (AASD-PPT) Length = 309 Score = 27.7 bits (60), Expect = 8.1 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = -1 Query: 191 EGNRWWQVSSGAWLPSXXTWYLVLLGV 111 EG RW S G WLPS W L + + Sbjct: 15 EGVRW-AFSCGTWLPSRAEWLLAMRSI 40
>POLS2_RAT (Q5K2P9) Polyserase-2 precursor (EC 3.4.21.-) (Polyserine protease| 2) Length = 875 Score = 27.7 bits (60), Expect = 8.1 Identities = 23/79 (29%), Positives = 28/79 (35%), Gaps = 3/79 (3%) Frame = +1 Query: 22 PRAFGVKNTQ-IWIKLVSPNRYLDAYVCVSQTPRSTRYQVXQLGNHAPLLTCHHRFPSQX 198 PRAF T WI+ V+ YL+ + P + H C R S Sbjct: 555 PRAFSPMQTHGPWIRHVTQGAYLEDQLTWDWGPEGEETEKQTCPTHTEHGACGLRPKSTP 614 Query: 199 RSVLHPWQTS--QTGSGPC 249 VL PW T TG C Sbjct: 615 AGVLWPWLTEVHVTGDRVC 633 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,159,783 Number of Sequences: 219361 Number of extensions: 676084 Number of successful extensions: 1371 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 1350 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1371 length of database: 80,573,946 effective HSP length: 60 effective length of database: 67,412,286 effective search space used: 1617894864 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
