ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20p24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ167203.2| Triticum aestivum eukaryotic translation initiati... 434 e-119
2gb|DQ234393.1| Aegilops tauschii translation initiation factor 5... 293 1e-76
3gb|DQ234392.1| Thinopyrum intermedium translation initiation fac... 293 1e-76
4gb|DQ167202.1| Triticum aestivum eukaryotic translation initiati... 293 1e-76
5gb|DQ167201.1| Triticum aestivum eukaryotic translation initiati... 293 1e-76
6gb|DQ234391.1| Secale cereale translation initiation factor 5A m... 285 3e-74
7gb|DQ234394.1| Secale sylvestre translation initiation factor 5A... 278 8e-72
8gb|DQ234390.1| Dasypyrum breviaristatum translation initiation f... 272 5e-70
9gb|DQ414518.1| Dasypyrum breviaristatum eukaryotic translation i... 101 1e-18
10gb|DQ279900.1| Haynaldia villosa translation initiation factor g... 101 1e-18
11gb|DQ279899.1| Crithopsis delileana translation initiation facto... 101 1e-18
12gb|DQ279898.1| Psathyrostachys juncea translation initiation fac... 94 3e-16
13gb|DQ279894.1| Lophopyrum elongatum translation initiation facto... 94 3e-16
14gb|DQ279897.1| Secale cereale translation initiation factor gene... 86 6e-14
15gb|DQ279896.1| Aegilops tauschii translation initiation factor g... 86 6e-14
16gb|DQ279895.1| Eremopyrum bonaepartis translation initiation fac... 86 6e-14
17gb|DQ279893.1| Pseudoroegneria spicata translation initiation fa... 86 6e-14
18gb|AF296086.1|AF296086 Lycopersicon esculentum eukaryotic transl... 64 2e-07
19dbj|AB004827.1| Solanum tuberosum mRNA for eukaryotic initiation... 64 2e-07
20dbj|AB004823.1| Solanum tuberosum mRNA for eukaryotic initiation... 62 9e-07
21ref|NM_194115.2| Oryza sativa (japonica cultivar-group), mRNA 60 4e-06
22dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 60 4e-06
23dbj|AP003874.5| Oryza sativa (japonica cultivar-group) genomic D... 60 4e-06
24dbj|AP005244.3| Oryza sativa (japonica cultivar-group) genomic D... 60 4e-06
25dbj|AK058206.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 4e-06
26gb|AY484392.1| Capsicum annuum eukaryotic initiation factor 5A2 ... 56 6e-05
27gb|AY484391.1| Capsicum annuum mary storys protein mRNA, complet... 56 6e-05
28ref|XM_469841.1| Oryza sativa (japonica cultivar-group), mRNA 52 9e-04
29gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 52 9e-04
30gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosom... 52 9e-04
31emb|AJ312906.1|OSA312906 Oryza sativa mRNA for translation initi... 52 9e-04
32emb|AJ252135.1|OSA252135 Oryza sativa mRNA for translation initi... 52 9e-04
33gb|DQ083198.1| Oryza sativa (indica cultivar-group) clone 5S10E1... 52 9e-04
34gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genom... 52 9e-04
35dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 52 9e-04
36dbj|AK121592.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 9e-04
37dbj|AK060387.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 9e-04
38ref|NM_102425.2| Arabidopsis thaliana translation initiation fac... 44 0.21
39ref|NM_102426.3| Arabidopsis thaliana unknown protein AT1G26640 ... 44 0.21
40gb|AY389707.1| Hyacinthus orientalis eukaryotic translation init... 44 0.21
41gb|AY496435.1| Brassica napus eukaryotic translation initiation ... 44 0.21
42gb|AF492850.1| Arabidopsis thaliana putative initiation factor 5... 44 0.21
43gb|AY055789.1| Arabidopsis thaliana At1g26630/T24P13_1 mRNA, com... 44 0.21
44gb|AY039588.1| Arabidopsis thaliana At1g26630/T24P13_1 mRNA, com... 44 0.21
45emb|BX814371.1|CNS0ABYU Arabidopsis thaliana Full-length cDNA Co... 44 0.21
46gb|AY084827.1| Arabidopsis thaliana clone 118823 mRNA, complete ... 44 0.21
47gb|AC006535.7|AC006535 Genomic sequence for Arabidopsis thaliana... 44 0.21
48gb|AC182748.2| Mus musculus BAC clone RP23-348N13 from chromosom... 42 0.83
49gb|AC154443.2| Mus musculus BAC clone RP24-178N23 from chromosom... 42 0.83
50gb|DQ228346.1| Solanum tuberosum clone 148H01 eukaryotic initiat... 40 3.3
51gb|DQ222495.1| Solanum tuberosum clone 103C10 eukaryotic initiat... 40 3.3
52gb|AC123867.4| Mus musculus BAC clone RP23-127O13 from chromosom... 40 3.3
53ref|XM_789239.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 3.3
54emb|X63543.1|NTNEIF5A3 N.tabacum NeIF-5A3 gene for initiation fa... 40 3.3
55gb|AC151836.3| Mus musculus BAC clone RP23-359F5 from chromosome... 40 3.3
56emb|BX842561.12| Mouse DNA sequence from clone RP23-440P8 on chr... 40 3.3
57ref|XM_318419.2| Anopheles gambiae str. PEST ENSANGP00000002762 ... 40 3.3
58emb|AL671872.10| Mouse DNA sequence from clone RP23-151N17 on ch... 40 3.3
59dbj|AB004826.1| Solanum tuberosum mRNA for eukaryotic initiation... 40 3.3 
>gb|DQ167203.2| Triticum aestivum eukaryotic translation initiation factor 5A3
           mRNA, complete cds
          Length = 768

 Score =  434 bits (219), Expect = e-119
 Identities = 244/254 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gataacaaagtactagcagcacctcgagcattcggtgtaaaaaacacacaaatctggatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gataacaaagtactagcagcacctcgagcattcggtgtaaaaaacacacaaatctggatc 689

                                                                       
Query: 61  aaacttgtttcacccaacagatatcttgatgcctatgtatgtgtatctcaaacacccaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 aaacttgtttcacccaacagatatcttgatgcctatgtatgtgtatctcaaacacccaga 629

                                                                       
Query: 121 agcactagataccaagtnngncagctaggcaaccatgcaccgctgcttacttgccaccac 180
           |||||||||||||||||    ||| |||||||||| |||| |||||||||||||||||||
Sbjct: 628 agcactagataccaagtatcgcaggtaggcaaccacgcacagctgcttacttgccaccac 569

                                                                       
Query: 181 cgatttccttcacagngcagatctgttcttcacccatggcagacntcacagacaggatca 240
           ||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 568 cgatttccttcacagcgcagatctgttcttcacccatggcggacatcacagacaggatca 509

                         
Query: 241 ggtccttgccatca 254
           ||||||||||||||
Sbjct: 508 ggtccttgccatca 495
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>gb|DQ234393.1| Aegilops tauschii translation initiation factor 5A gene, complete
           cds
          Length = 636

 Score =  293 bits (148), Expect = 1e-76
 Identities = 173/183 (94%)
 Strand = Plus / Minus

                                                                       
Query: 72  acccaacagatatcttgatgcctatgtatgtgtatctcaaacacccagaagcactagata 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 acccaacagatatcttgatgcctatgtatgtgtatctcaaacacccagaagcactagata 577

                                                                       
Query: 132 ccaagtnngncagctaggcaaccatgcaccgctgcttacttgccaccaccgatttccttc 191
           ||||||    ||| |||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 576 ccaagtatcgcaggtaggcaaccacgcacagctgcttacttgccaccaccgatttccttc 517

                                                                       
Query: 192 acagngcagatctgttcttcacccatggcagacntcacagacaggatcaggtccttgcca 251
           |||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 516 acagcgcagatctgttcttcacccatggcggacatcacagacaggatcaggtccttgcca 457

              
Query: 252 tca 254
           |||
Sbjct: 456 tca 454
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>gb|DQ234392.1| Thinopyrum intermedium translation initiation factor 5A mRNA,
           complete cds
          Length = 636

 Score =  293 bits (148), Expect = 1e-76
 Identities = 173/183 (94%)
 Strand = Plus / Minus

                                                                       
Query: 72  acccaacagatatcttgatgcctatgtatgtgtatctcaaacacccagaagcactagata 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 acccaacagatatcttgatgcctatgtatgtgtatctcaaacacccagaagcactagata 577

                                                                       
Query: 132 ccaagtnngncagctaggcaaccatgcaccgctgcttacttgccaccaccgatttccttc 191
           ||||||    |||||||||||||| |||| |||||||||||||||||||||| |||||||
Sbjct: 576 ccaagtaccgcagctaggcaaccacgcacagctgcttacttgccaccaccgacttccttc 517

                                                                       
Query: 192 acagngcagatctgttcttcacccatggcagacntcacagacaggatcaggtccttgcca 251
           |||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 516 acagcgcagatctgttcttcacccatggcggacatcacagacaggatcaggtccttgcca 457

              
Query: 252 tca 254
           |||
Sbjct: 456 tca 454
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>gb|DQ167202.1| Triticum aestivum eukaryotic translation initiation factor 5A2 gene,
            complete cds
          Length = 1679

 Score =  293 bits (148), Expect = 1e-76
 Identities = 173/183 (94%)
 Strand = Plus / Minus

                                                                        
Query: 72   acccaacagatatcttgatgcctatgtatgtgtatctcaaacacccagaagcactagata 131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1679 acccaacagatatcttgatgcctatgtatgtgtatctcaaacacccagaagcactagata 1620

                                                                        
Query: 132  ccaagtnngncagctaggcaaccatgcaccgctgcttacttgccaccaccgatttccttc 191
            ||||||    ||| |||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 1619 ccaagtatcgcaggtaggcaaccacgcacagctgcttacttgccaccaccgatttccttc 1560

                                                                        
Query: 192  acagngcagatctgttcttcacccatggcagacntcacagacaggatcaggtccttgcca 251
            |||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 1559 acagcgcagatctgttcttcacccatggcggacatcacagacaggatcaggtccttgcca 1500

               
Query: 252  tca 254
            |||
Sbjct: 1499 tca 1497
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>gb|DQ167201.1| Triticum aestivum eukaryotic translation initiation factor 5A1 gene,
            complete cds
          Length = 1910

 Score =  293 bits (148), Expect = 1e-76
 Identities = 173/183 (94%)
 Strand = Plus / Minus

                                                                        
Query: 72   acccaacagatatcttgatgcctatgtatgtgtatctcaaacacccagaagcactagata 131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1910 acccaacagatatcttgatgcctatgtatgtgtatctcaaacacccagaagcactagata 1851

                                                                        
Query: 132  ccaagtnngncagctaggcaaccatgcaccgctgcttacttgccaccaccgatttccttc 191
            ||||||    ||| |||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 1850 ccaagtatcgcaggtaggcaaccacgcacagctgcttacttgccaccaccgatttccttc 1791

                                                                        
Query: 192  acagngcagatctgttcttcacccatggcagacntcacagacaggatcaggtccttgcca 251
            |||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 1790 acagcgcagatctgttcttcacccatggcggacatcacagacaggatcaggtccttgcca 1731

               
Query: 252  tca 254
            |||
Sbjct: 1730 tca 1728
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>gb|DQ234391.1| Secale cereale translation initiation factor 5A mRNA, complete cds
          Length = 636

 Score =  285 bits (144), Expect = 3e-74
 Identities = 172/183 (93%)
 Strand = Plus / Minus

                                                                       
Query: 72  acccaacagatatcttgatgcctatgtatgtgtatctcaaacacccagaagcactagata 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 acccaacagatatcttgatgcctatgtatgtgtatctcaaacacccagaagcactagata 577

                                                                       
Query: 132 ccaagtnngncagctaggcaaccatgcaccgctgcttacttgccaccaccgatttccttc 191
           ||||||    ||| |||||||||  |||| ||||||||||||||||||||||||||||||
Sbjct: 576 ccaagtatcgcaggtaggcaaccgcgcacagctgcttacttgccaccaccgatttccttc 517

                                                                       
Query: 192 acagngcagatctgttcttcacccatggcagacntcacagacaggatcaggtccttgcca 251
           |||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 516 acagcgcagatctgttcttcacccatggcggacatcacagacaggatcaggtccttgcca 457

              
Query: 252 tca 254
           |||
Sbjct: 456 tca 454
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>gb|DQ234394.1| Secale sylvestre translation initiation factor 5A mRNA, complete
           cds
          Length = 636

 Score =  278 bits (140), Expect = 8e-72
 Identities = 171/183 (93%)
 Strand = Plus / Minus

                                                                       
Query: 72  acccaacagatatcttgatgcctatgtatgtgtatctcaaacacccagaagcactagata 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 acccaacagatatcttgatgcctatgtatgtgtatctcaaacacccagaagcactagata 577

                                                                       
Query: 132 ccaagtnngncagctaggcaaccatgcaccgctgcttacttgccaccaccgatttccttc 191
           ||||||    ||| |||||||||  |||| ||||||||||||||||||||||||||||| 
Sbjct: 576 ccaagtatcgcaggtaggcaaccgcgcacagctgcttacttgccaccaccgatttcctta 517

                                                                       
Query: 192 acagngcagatctgttcttcacccatggcagacntcacagacaggatcaggtccttgcca 251
           |||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 516 acagcgcagatctgttcttcacccatggcggacatcacagacaggatcaggtccttgcca 457

              
Query: 252 tca 254
           |||
Sbjct: 456 tca 454
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>gb|DQ234390.1| Dasypyrum breviaristatum translation initiation factor 5A mRNA,
           complete cds
          Length = 637

 Score =  272 bits (137), Expect = 5e-70
 Identities = 172/184 (93%), Gaps = 1/184 (0%)
 Strand = Plus / Minus

                                                                       
Query: 72  acccaacagatatcttgatgcctatgtat-gtgtatctcaaacacccagaagcactagat 130
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 637 acccaacagatatcttgatgcctatgtattgtgtatctcaaacacccagaagcactagat 578

                                                                       
Query: 131 accaagtnngncagctaggcaaccatgcaccgctgcttacttgccaccaccgatttcctt 190
           |||||||    ||| |||||||||| || | |||||||||||||||||||| ||||||||
Sbjct: 577 accaagtatcgcagataggcaaccacgcgcagctgcttacttgccaccaccaatttcctt 518

                                                                       
Query: 191 cacagngcagatctgttcttcacccatggcagacntcacagacaggatcaggtccttgcc 250
           ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 517 cacagcgcagatctgttcttcacccatggcagacatcacagacaggatcaggtccttgcc 458

               
Query: 251 atca 254
           ||||
Sbjct: 457 atca 454
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>gb|DQ414518.1| Dasypyrum breviaristatum eukaryotic translation initiation factor
            eIF5A gene, partial cds
          Length = 1344

 Score =  101 bits (51), Expect = 1e-18
 Identities = 53/54 (98%)
 Strand = Plus / Minus

                                                                  
Query: 201  atctgttcttcacccatggcagacntcacagacaggatcaggtccttgccatca 254
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1344 atctgttcttcacccatggcagacatcacagacaggatcaggtccttgccatca 1291
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>gb|DQ279900.1| Haynaldia villosa translation initiation factor gene, partial cds
          Length = 1338

 Score =  101 bits (51), Expect = 1e-18
 Identities = 53/54 (98%)
 Strand = Plus / Minus

                                                                  
Query: 201  atctgttcttcacccatggcagacntcacagacaggatcaggtccttgccatca 254
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1338 atctgttcttcacccatggcagacatcacagacaggatcaggtccttgccatca 1285
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>gb|DQ279899.1| Crithopsis delileana translation initiation factor gene, partial cds
          Length = 1494

 Score =  101 bits (51), Expect = 1e-18
 Identities = 53/54 (98%)
 Strand = Plus / Minus

                                                                  
Query: 201  atctgttcttcacccatggcagacntcacagacaggatcaggtccttgccatca 254
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1494 atctgttcttcacccatggcagacatcacagacaggatcaggtccttgccatca 1441
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>gb|DQ279898.1| Psathyrostachys juncea translation initiation factor gene, partial
            cds
          Length = 1375

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                  
Query: 201  atctgttcttcacccatggcagacntcacagacaggatcaggtccttgccatca 254
            |||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 1375 atctgttcttcacccatggcggacatcacagacaggatcaggtccttgccatca 1322
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>gb|DQ279894.1| Lophopyrum elongatum translation initiation factor gene, partial cds
          Length = 1334

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 52/54 (96%)
 Strand = Plus / Minus

                                                                  
Query: 201  atctgttcttcacccatggcagacntcacagacaggatcaggtccttgccatca 254
            |||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 1334 atctgttcttcacccatggcggacatcacagacaggatcaggtccttgccatca 1281
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>gb|DQ279897.1| Secale cereale translation initiation factor gene, partial cds
          Length = 1298

 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                  
Query: 201  atctgttcttcacccatggcagacntcacagacaggatcaggtccttgccatca 254
            ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 1298 atctgctcttcacccatggcggacatcacagacaggatcaggtccttgccatca 1245
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>gb|DQ279896.1| Aegilops tauschii translation initiation factor gene, partial cds
          Length = 1282

 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                  
Query: 201  atctgttcttcacccatggcagacntcacagacaggatcaggtccttgccatca 254
            ||||||||||||||||| || ||| |||||||||||||||||||||||||||||
Sbjct: 1282 atctgttcttcacccattgcggacatcacagacaggatcaggtccttgccatca 1229
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>gb|DQ279895.1| Eremopyrum bonaepartis translation initiation factor gene, partial
            cds
          Length = 1334

 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                  
Query: 201  atctgttcttcacccatggcagacntcacagacaggatcaggtccttgccatca 254
            ||||||||||||||||| || ||| |||||||||||||||||||||||||||||
Sbjct: 1334 atctgttcttcacccatcgcggacatcacagacaggatcaggtccttgccatca 1281
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>gb|DQ279893.1| Pseudoroegneria spicata translation initiation factor gene, partial
            cds
          Length = 1358

 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                  
Query: 201  atctgttcttcacccatggcagacntcacagacaggatcaggtccttgccatca 254
            ||||||||||||||||| || ||| |||||||||||||||||||||||||||||
Sbjct: 1358 atctgttcttcacccattgcggacatcacagacaggatcaggtccttgccatca 1305
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>gb|AF296086.1|AF296086 Lycopersicon esculentum eukaryotic translation initiation factor
           5A-4 mRNA, complete cds
          Length = 760

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 186 tccttcacagngcagatctgttcttcacccatggcagacntcacagacag 235
           ||||||||||  |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 518 tccttcacagcacagatctgctcttcacccattgcagacatcacagacag 469
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>dbj|AB004827.1| Solanum tuberosum mRNA for eukaryotic initiation factor 5A1,
           complete cds
          Length = 632

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 186 tccttcacagngcagatctgttcttcacccatggcagacntcacagacag 235
           ||||||||||  |||||||| ||||||||||| |||||| ||||||||||
Sbjct: 506 tccttcacagcacagatctgctcttcacccattgcagacatcacagacag 457
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>dbj|AB004823.1| Solanum tuberosum mRNA for eukaryotic initiation factor 5A2,
           complete cds
          Length = 716

 Score = 61.9 bits (31), Expect = 9e-07
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                            
Query: 186 tccttcacagngcagatctgttcttcacccatggcagacntcacagaca 234
           ||||||||||  |||||||| ||||||||||| |||||| |||||||||
Sbjct: 520 tccttcacagcacagatctgctcttcacccattgcagacatcacagaca 472
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>ref|NM_194115.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 863

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 198 cagatctgttcttcacccatggcagacntcacagacaggatcaggtccttgcc 250
           ||||||||||||||||||||||| ||| |||||| || |||||  ||||||||
Sbjct: 542 cagatctgttcttcacccatggcggacatcacagtcaagatcatatccttgcc 490
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                   
Query: 198    cagatctgttcttcacccatggcagacntcacagacaggatcaggtccttgcc 250
              ||||||||||||||||||||||| ||| |||||| || |||||  ||||||||
Sbjct: 704181 cagatctgttcttcacccatggcggacatcacagtcaagatcatatccttgcc 704129
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>dbj|AP003874.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1118_G09
          Length = 115815

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                  
Query: 198   cagatctgttcttcacccatggcagacntcacagacaggatcaggtccttgcc 250
             ||||||||||||||||||||||| ||| |||||| || |||||  ||||||||
Sbjct: 42712 cagatctgttcttcacccatggcggacatcacagtcaagatcatatccttgcc 42660
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>dbj|AP005244.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1513_F02
          Length = 126845

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                  
Query: 198   cagatctgttcttcacccatggcagacntcacagacaggatcaggtccttgcc 250
             ||||||||||||||||||||||| ||| |||||| || |||||  ||||||||
Sbjct: 23988 cagatctgttcttcacccatggcggacatcacagtcaagatcatatccttgcc 23936
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>dbj|AK058206.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-A08, full
           insert sequence
          Length = 863

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 198 cagatctgttcttcacccatggcagacntcacagacaggatcaggtccttgcc 250
           ||||||||||||||||||||||| ||| |||||| || |||||  ||||||||
Sbjct: 542 cagatctgttcttcacccatggcggacatcacagtcaagatcatatccttgcc 490
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>gb|AY484392.1| Capsicum annuum eukaryotic initiation factor 5A2 (eIF5A2) mRNA,
           complete cds
          Length = 718

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 186 tccttcacagngcagatctgttcttcacccatggcagacntcacagacag 235
           ||||||||||  || ||||||||||||||||| |||||| |||| |||||
Sbjct: 493 tccttcacagcacaaatctgttcttcacccattgcagacatcaccgacag 444
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>gb|AY484391.1| Capsicum annuum mary storys protein mRNA, complete cds
          Length = 718

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 186 tccttcacagngcagatctgttcttcacccatggcagacntcacagacag 235
           ||||||||||  || ||||||||||||||||| |||||| |||| |||||
Sbjct: 493 tccttcacagcacaaatctgttcttcacccattgcagacatcaccgacag 444
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>ref|XM_469841.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 859

 Score = 52.0 bits (26), Expect = 9e-04
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 186 tccttcacagngcagatctgttcttcacccatggcagacntcac 229
           ||||||| || ||||||||| || ||||||||||||||| ||||
Sbjct: 542 tccttcagagcgcagatctgctcctcacccatggcagacatcac 499
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 52.0 bits (26), Expect = 9e-04
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                            
Query: 186      tccttcacagngcagatctgttcttcacccatggcagacntcac 229
                ||||||| || ||||||||| || ||||||||||||||| ||||
Sbjct: 31086565 tccttcagagcgcagatctgctcctcacccatggcagacatcac 31086522
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>gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01
            genomic sequence, complete sequence
          Length = 168759

 Score = 52.0 bits (26), Expect = 9e-04
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                        
Query: 186  tccttcacagngcagatctgttcttcacccatggcagacntcac 229
            ||||||| || ||||||||| || ||||||||||||||| ||||
Sbjct: 9499 tccttcagagcgcagatctgctcctcacccatggcagacatcac 9542
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>emb|AJ312906.1|OSA312906 Oryza sativa mRNA for translation initiation factor, eIF-5A (eIF-5A
           gene)
          Length = 831

 Score = 52.0 bits (26), Expect = 9e-04
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 186 tccttcacagngcagatctgttcttcacccatggcagacntcac 229
           ||||||| || ||||||||| || ||||||||||||||| ||||
Sbjct: 537 tccttcagagcgcagatctgctcctcacccatggcagacatcac 494
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>emb|AJ252135.1|OSA252135 Oryza sativa mRNA for translation initiation factor eIF-5A
          Length = 722

 Score = 52.0 bits (26), Expect = 9e-04
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 186 tccttcacagngcagatctgttcttcacccatggcagacntcac 229
           ||||||| || ||||||||| || ||||||||||||||| ||||
Sbjct: 537 tccttcagagcgcagatctgctcctcacccatggcagacatcac 494
to top
>gb|DQ083198.1| Oryza sativa (indica cultivar-group) clone 5S10E11 mRNA sequence
          Length = 371

 Score = 52.0 bits (26), Expect = 9e-04
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 186 tccttcacagngcagatctgttcttcacccatggcagacntcac 229
           ||||||| || ||||||||| || ||||||||||||||| ||||
Sbjct: 200 tccttcagagcgcagatctgctcctcacccatggcagacatcac 157
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>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence,
            complete sequence
          Length = 128017

 Score = 52.0 bits (26), Expect = 9e-04
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 186  tccttcacagngcagatctgttcttcacccatggcagacntcac 229
            ||||||| || ||||||||| || ||||||||||||||| ||||
Sbjct: 7206 tccttcagagcgcagatctgctcctcacccatggcagacatcac 7163
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 52.0 bits (26), Expect = 9e-04
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                            
Query: 186      tccttcacagngcagatctgttcttcacccatggcagacntcac 229
                ||||||| || ||||||||| || ||||||||||||||| ||||
Sbjct: 31177088 tccttcagagcgcagatctgctcctcacccatggcagacatcac 31177045
to top
>dbj|AK121592.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033038B14, full
           insert sequence
          Length = 838

 Score = 52.0 bits (26), Expect = 9e-04
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 186 tccttcacagngcagatctgttcttcacccatggcagacntcac 229
           ||||||| || ||||||||| || ||||||||||||||| ||||
Sbjct: 547 tccttcagagcgcagatctgctcctcacccatggcagacatcac 504
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>dbj|AK060387.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-G06, full
           insert sequence
          Length = 947

 Score = 52.0 bits (26), Expect = 9e-04
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 186 tccttcacagngcagatctgttcttcacccatggcagacntcac 229
           ||||||| || ||||||||| || ||||||||||||||| ||||
Sbjct: 553 tccttcagagcgcagatctgctcctcacccatggcagacatcac 510
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>ref|NM_102425.2| Arabidopsis thaliana translation initiation factor AT1G26630 mRNA,
           complete cds
          Length = 929

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                       
Query: 167 ttacttgccaccaccgatttccttcacagngcagatctgttcttcacccatggcagacnt 226
           ||||||||||||||| | |||||| || |  |||||||| || || ||||||| |||| |
Sbjct: 612 ttacttgccaccaccaacttccttgacggcacagatctgctcctctcccatggaagacat 553

                   
Query: 227 cacagaca 234
            |||||||
Sbjct: 552 gacagaca 545
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>ref|NM_102426.3| Arabidopsis thaliana unknown protein AT1G26640 mRNA, complete cds
          Length = 1762

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 56/68 (82%)
 Strand = Plus / Plus

                                                                        
Query: 167  ttacttgccaccaccgatttccttcacagngcagatctgttcttcacccatggcagacnt 226
            ||||||||||||||| | |||||| || |  |||||||| || || ||||||| |||| |
Sbjct: 1655 ttacttgccaccaccaacttccttgacggcacagatctgctcctctcccatggaagacat 1714

                    
Query: 227  cacagaca 234
             |||||||
Sbjct: 1715 gacagaca 1722
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>gb|AY389707.1| Hyacinthus orientalis eukaryotic translation initiation factor 5A-4
           mRNA, complete cds
          Length = 794

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 200 gatctgttcttcacccatggcagacntcacaga 232
           |||||||||||| |||||||||||| | |||||
Sbjct: 479 gatctgttcttctcccatggcagacatgacaga 447
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>gb|AY496435.1| Brassica napus eukaryotic translation initiation factor-5A mRNA,
           complete cds
          Length = 658

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                       
Query: 167 ttacttgccaccaccgatttccttcacagngcagatctgttcttcacccatggcagacnt 226
           ||||||||||||||| | |||||| || |  |||||||| || || ||||||| |||| |
Sbjct: 480 ttacttgccaccaccaacttccttgacggcacagatctgctcctctcccatggaagacat 421

                   
Query: 227 cacagaca 234
            |||||||
Sbjct: 420 gacagaca 413
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>gb|AF492850.1| Arabidopsis thaliana putative initiation factor 5A mRNA, complete
           cds
          Length = 726

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                       
Query: 167 ttacttgccaccaccgatttccttcacagngcagatctgttcttcacccatggcagacnt 226
           ||||||||||||||| | |||||| || |  |||||||| || || ||||||| |||| |
Sbjct: 557 ttacttgccaccaccaacttccttgacggcacagatctgctcctctcccatggaagacat 498

                   
Query: 227 cacagaca 234
            |||||||
Sbjct: 497 gacagaca 490
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>gb|AY055789.1| Arabidopsis thaliana At1g26630/T24P13_1 mRNA, complete cds
          Length = 480

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                       
Query: 167 ttacttgccaccaccgatttccttcacagngcagatctgttcttcacccatggcagacnt 226
           ||||||||||||||| | |||||| || |  |||||||| || || ||||||| |||| |
Sbjct: 480 ttacttgccaccaccaacttccttgacggcacagatctgctcctctcccatggaagacat 421

                   
Query: 227 cacagaca 234
            |||||||
Sbjct: 420 gacagaca 413
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>gb|AY039588.1| Arabidopsis thaliana At1g26630/T24P13_1 mRNA, complete cds
          Length = 765

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                       
Query: 167 ttacttgccaccaccgatttccttcacagngcagatctgttcttcacccatggcagacnt 226
           ||||||||||||||| | |||||| || |  |||||||| || || ||||||| |||| |
Sbjct: 563 ttacttgccaccaccaacttccttgacggcacagatctgctcctctcccatggaagacat 504

                   
Query: 227 cacagaca 234
            |||||||
Sbjct: 503 gacagaca 496
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>emb|BX814371.1|CNS0ABYU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB70ZA04 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 689

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                       
Query: 167 ttacttgccaccaccgatttccttcacagngcagatctgttcttcacccatggcagacnt 226
           ||||||||||||||| | |||||| || |  |||||||| || || ||||||| |||| |
Sbjct: 532 ttacttgccaccaccaacttccttgacggcacagatctgctcctctcccatggaagacat 473

                   
Query: 227 cacagaca 234
            |||||||
Sbjct: 472 gacagaca 465
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>gb|AY084827.1| Arabidopsis thaliana clone 118823 mRNA, complete sequence
          Length = 781

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                       
Query: 167 ttacttgccaccaccgatttccttcacagngcagatctgttcttcacccatggcagacnt 226
           ||||||||||||||| | |||||| || |  |||||||| || || ||||||| |||| |
Sbjct: 611 ttacttgccaccaccaacttccttgacggcacagatctgctcctctcccatggaagacat 552

                   
Query: 227 cacagaca 234
            |||||||
Sbjct: 551 gacagaca 544
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>gb|AC006535.7|AC006535 Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome
            I, complete sequence
          Length = 98630

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                        
Query: 167  ttacttgccaccaccgatttccttcacagngcagatctgttcttcacccatggcagacnt 226
            ||||||||||||||| | |||||| || |  |||||||| || || ||||||| |||| |
Sbjct: 6856 ttacttgccaccaccaacttccttgacggcacagatctgctcctctcccatggaagacat 6797

                    
Query: 227  cacagaca 234
             |||||||
Sbjct: 6796 gacagaca 6789
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>gb|AC182748.2| Mus musculus BAC clone RP23-348N13 from chromosome 17, complete
             sequence
          Length = 214515

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 93    ctatgtatgtgtatctcaaac 113
             |||||||||||||||||||||
Sbjct: 39339 ctatgtatgtgtatctcaaac 39359
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>gb|AC154443.2| Mus musculus BAC clone RP24-178N23 from chromosome 17, complete
             sequence
          Length = 174220

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 93    ctatgtatgtgtatctcaaac 113
             |||||||||||||||||||||
Sbjct: 90408 ctatgtatgtgtatctcaaac 90428
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>gb|DQ228346.1| Solanum tuberosum clone 148H01 eukaryotic initiation factor
           5A5-like protein mRNA, complete cds
          Length = 750

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                              
Query: 213 cccatggcagacntcacagacaggatcaggtcctt 247
           |||||||||||| |||| ||||| | |||||||||
Sbjct: 483 cccatggcagacatcactgacagaaccaggtcctt 449
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>gb|DQ222495.1| Solanum tuberosum clone 103C10 eukaryotic initiation factor
           5A5-like mRNA, complete cds
          Length = 757

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                              
Query: 213 cccatggcagacntcacagacaggatcaggtcctt 247
           |||||||||||| |||| ||||| | |||||||||
Sbjct: 492 cccatggcagacatcactgacagaaccaggtcctt 458
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>gb|AC123867.4| Mus musculus BAC clone RP23-127O13 from chromosome 14, complete sequence
          Length = 216834

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     aaaaaacacacaaatctgga 58
              ||||||||||||||||||||
Sbjct: 203687 aaaaaacacacaaatctgga 203668
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>ref|XM_789239.1| PREDICTED: Strongylocentrotus purpuratus similar to
           tetratricopeptide repeat domain 12 (LOC589600), partial
           mRNA
          Length = 949

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 219 gcagacntcacagacaggatcag 241
           |||||| ||||||||||||||||
Sbjct: 300 gcagacctcacagacaggatcag 322
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>emb|X63543.1|NTNEIF5A3 N.tabacum NeIF-5A3 gene for initiation factor 5A(3)
          Length = 2443

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                               
Query: 213  cccatggcagacntcacagacaggatcaggtcctt 247
            |||||||||||| |||| ||||| | |||||||||
Sbjct: 2317 cccatggcagacatcactgacagaaccaggtcctt 2283
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>gb|AC151836.3| Mus musculus BAC clone RP23-359F5 from chromosome 14, complete sequence
          Length = 230502

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    aaaaaacacacaaatctgga 58
             ||||||||||||||||||||
Sbjct: 82230 aaaaaacacacaaatctgga 82211
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>emb|BX842561.12| Mouse DNA sequence from clone RP23-440P8 on chromosome 4, complete
             sequence
          Length = 112732

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    atgtatgtgtatctcaaaca 114
             ||||||||||||||||||||
Sbjct: 40859 atgtatgtgtatctcaaaca 40878
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>ref|XM_318419.2| Anopheles gambiae str. PEST ENSANGP00000002762
           (ENSANGG00000002286), partial mRNA
          Length = 12075

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 146 taggcaaccatgcaccgctg 165
           ||||||||||||||||||||
Sbjct: 329 taggcaaccatgcaccgctg 348
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>emb|AL671872.10| Mouse DNA sequence from clone RP23-151N17 on chromosome 4, complete
             sequence
          Length = 188386

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    atgtatgtgtatctcaaaca 114
             ||||||||||||||||||||
Sbjct: 79347 atgtatgtgtatctcaaaca 79366
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>dbj|AB004826.1| Solanum tuberosum mRNA for eukaryotic initiation factor 5A5,
           complete cds
          Length = 688

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                              
Query: 213 cccatggcagacntcacagacaggatcaggtcctt 247
           |||||||||||| |||| ||||| | |||||||||
Sbjct: 500 cccatggcagacatcactgacagaaccaggtcctt 466


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,100,955
Number of Sequences: 3902068
Number of extensions: 2100955
Number of successful extensions: 38034
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37938
Number of HSP's gapped (non-prelim): 95
length of query: 254
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 232
effective length of database: 17,147,199,772
effective search space: 3978150347104
effective search space used: 3978150347104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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