ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21e23 |
|---|---|
| Clone Library Name | barley_pub |
>TIP1_MOUSE (Q9CR47) TGF-beta-inducible nuclear protein 1 (L-name-related| protein 42) (LNR42) Length = 260 Score = 123 bits (308), Expect(2) = 2e-40 Identities = 57/72 (79%), Positives = 65/72 (90%) Frame = -2 Query: 444 KCTFNLDIISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNP 265 K TF L I+ VKKNP+ P+YT+LGV+T+GT+IEVNVSELGLVT GKV+WGKYAQVTNNP Sbjct: 189 KATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNP 248 Query: 264 ENDGCINAVLLV 229 ENDGCINAVLLV Sbjct: 249 ENDGCINAVLLV 260 Score = 62.4 bits (150), Expect(2) = 2e-40 Identities = 28/31 (90%), Positives = 28/31 (90%) Frame = -1 Query: 535 GFTRKPPKYERFIRPTGLRFTKAHVTHXELK 443 GFTRKPPKYERFIRP GLRF KAHVTH ELK Sbjct: 159 GFTRKPPKYERFIRPMGLRFKKAHVTHPELK 189
>TIP1_HUMAN (O95478) TGF-beta-inducible nuclear protein 1 (Hairy cell leukemia| protein 1) Length = 260 Score = 123 bits (308), Expect(2) = 2e-40 Identities = 57/72 (79%), Positives = 65/72 (90%) Frame = -2 Query: 444 KCTFNLDIISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNP 265 K TF L I+ VKKNP+ P+YT+LGV+T+GT+IEVNVSELGLVT GKV+WGKYAQVTNNP Sbjct: 189 KATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNP 248 Query: 264 ENDGCINAVLLV 229 ENDGCINAVLLV Sbjct: 249 ENDGCINAVLLV 260 Score = 62.4 bits (150), Expect(2) = 2e-40 Identities = 28/31 (90%), Positives = 28/31 (90%) Frame = -1 Query: 535 GFTRKPPKYERFIRPTGLRFTKAHVTHXELK 443 GFTRKPPKYERFIRP GLRF KAHVTH ELK Sbjct: 159 GFTRKPPKYERFIRPMGLRFKKAHVTHPELK 189
>TIP1_BOVIN (Q3SX11) TGF-beta-inducible nuclear protein 1| Length = 260 Score = 123 bits (308), Expect(2) = 2e-40 Identities = 57/72 (79%), Positives = 65/72 (90%) Frame = -2 Query: 444 KCTFNLDIISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNP 265 K TF L I+ VKKNP+ P+YT+LGV+T+GT+IEVNVSELGLVT GKV+WGKYAQVTNNP Sbjct: 189 KATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNP 248 Query: 264 ENDGCINAVLLV 229 ENDGCINAVLLV Sbjct: 249 ENDGCINAVLLV 260 Score = 62.4 bits (150), Expect(2) = 2e-40 Identities = 28/31 (90%), Positives = 28/31 (90%) Frame = -1 Query: 535 GFTRKPPKYERFIRPTGLRFTKAHVTHXELK 443 GFTRKPPKYERFIRP GLRF KAHVTH ELK Sbjct: 159 GFTRKPPKYERFIRPMGLRFKKAHVTHPELK 189
>TIP1_RAT (Q9QYU7) TGF-beta-inducible nuclear protein 1 (Protein CDK105)| Length = 260 Score = 123 bits (308), Expect(2) = 4e-40 Identities = 57/72 (79%), Positives = 65/72 (90%) Frame = -2 Query: 444 KCTFNLDIISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNP 265 K TF L I+ VKKNP+ P+YT+LGV+T+GT+IEVNVSELGLVT GKV+WGKYAQVTNNP Sbjct: 189 KATFCLPILGVKKNPSSPLYTTLGVITKGTVIEVNVSELGLVTQGGKVIWGKYAQVTNNP 248 Query: 264 ENDGCINAVLLV 229 ENDGCINAVLLV Sbjct: 249 ENDGCINAVLLV 260 Score = 61.2 bits (147), Expect(2) = 4e-40 Identities = 27/31 (87%), Positives = 28/31 (90%) Frame = -1 Query: 535 GFTRKPPKYERFIRPTGLRFTKAHVTHXELK 443 GFTRKPPKYE+FIRP GLRF KAHVTH ELK Sbjct: 159 GFTRKPPKYEKFIRPMGLRFKKAHVTHPELK 189
>YEV6_YEAST (P40078) Hypothetical 29.7 kDa protein in RSP5-LCP5 intergenic| region Length = 261 Score = 113 bits (283), Expect(2) = 7e-32 Identities = 53/70 (75%), Positives = 60/70 (85%) Frame = -2 Query: 438 TFNLDIISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPEN 259 T L I++VKKNP PMYT LGV+T+GTIIEVNVSELG+VT GKVVWGKYAQVTN P+ Sbjct: 192 TVFLPILAVKKNPQSPMYTQLGVLTKGTIIEVNVSELGMVTAGGKVVWGKYAQVTNEPDR 251 Query: 258 DGCINAVLLV 229 DGC+NAVLLV Sbjct: 252 DGCVNAVLLV 261 Score = 43.1 bits (100), Expect(2) = 7e-32 Identities = 21/34 (61%), Positives = 25/34 (73%) Frame = -1 Query: 535 GFTRKPPKYERFIRPTGLRFTKAHVTHXELKMYV 434 GFTR+P K ER IRP+ LR KA+VTH EL + V Sbjct: 160 GFTRRPVKMERIIRPSALRQKKANVTHPELGVTV 193
>RS8E_PICTO (Q6L0D3) 30S ribosomal protein S8e| Length = 125 Score = 40.8 bits (94), Expect = 0.002 Identities = 24/71 (33%), Positives = 34/71 (47%) Frame = -2 Query: 444 KCTFNLDIISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNP 265 K T + I +VK+N P Y +M RGT+I + + A++T+ P Sbjct: 70 KTTRKVKINTVKENSADPHYVQRNIMNRGTVISTELGD---------------ARITSRP 114 Query: 264 ENDGCINAVLL 232 DG INAVLL Sbjct: 115 GQDGVINAVLL 125
>RS8E_THEVO (Q97BA2) 30S ribosomal protein S8e| Length = 127 Score = 37.7 bits (86), Expect = 0.020 Identities = 23/64 (35%), Positives = 30/64 (46%) Frame = -2 Query: 423 IISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCIN 244 II+VK+NP Y ++ +GTII + E A VT+ P DG IN Sbjct: 78 IITVKENPANSHYVQRNIINKGTIISTEIGE---------------AIVTSRPGQDGVIN 122 Query: 243 AVLL 232 A LL Sbjct: 123 AKLL 126
>RS8E_SULAC (Q4JAP5) 30S ribosomal protein S8e| Length = 128 Score = 37.0 bits (84), Expect = 0.035 Identities = 25/71 (35%), Positives = 37/71 (52%) Frame = -2 Query: 444 KCTFNLDIISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNP 265 K + IISV ++P Y G++ +GT+I+ +ELG A+VT+ P Sbjct: 71 KTAKKVKIISVLESPANREYARRGIIVKGTLIQ---TELG------------KAKVTSRP 115 Query: 264 ENDGCINAVLL 232 DG INA+LL Sbjct: 116 GQDGIINALLL 126
>RS8E_METJA (P54055) 30S ribosomal protein S8e| Length = 129 Score = 36.6 bits (83), Expect = 0.045 Identities = 23/64 (35%), Positives = 35/64 (54%) Frame = -2 Query: 423 IISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCIN 244 II+V++N Y V+T+G IIE +E+GL A+VT+ P DG +N Sbjct: 79 IITVRENKANIHYVRRNVITKGAIIE---TEIGL------------AKVTSRPGQDGTVN 123 Query: 243 AVLL 232 A+L+ Sbjct: 124 AILI 127
>RS8E_PYRHO (O58830) 30S ribosomal protein S8e| Length = 127 Score = 36.2 bits (82), Expect = 0.059 Identities = 20/64 (31%), Positives = 31/64 (48%) Frame = -2 Query: 423 IISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCIN 244 II V +NP + ++T+G IIE + + A+VT+ P DG +N Sbjct: 77 IIRVLENPANRQFARRNIITKGAIIETEIGK---------------AKVTSRPGQDGVVN 121 Query: 243 AVLL 232 A+LL Sbjct: 122 AILL 125
>RS8E_PYRKO (Q5JGF3) 30S ribosomal protein S8e| Length = 130 Score = 36.2 bits (82), Expect = 0.059 Identities = 22/64 (34%), Positives = 32/64 (50%) Frame = -2 Query: 423 IISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCIN 244 I++V +NP Y ++T+G IIE T GK + VT+ P DG +N Sbjct: 77 ILNVVENPANRQYARRNIITKGAIIE---------TEIGKAI------VTSRPGQDGVVN 121 Query: 243 AVLL 232 AVL+ Sbjct: 122 AVLI 125
>RS8E_ARCFU (O28130) 30S ribosomal protein S8e| Length = 125 Score = 35.8 bits (81), Expect = 0.078 Identities = 21/66 (31%), Positives = 33/66 (50%) Frame = -2 Query: 429 LDIISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGC 250 ++I SV +NP Y V+T+G II ++ + A+VTN P +G Sbjct: 74 VEIESVVENPAHVHYARRNVITKGAIIATSIGK---------------ARVTNRPSQEGV 118 Query: 249 INAVLL 232 +NAVL+ Sbjct: 119 VNAVLI 124
>RS8E_PYRFU (Q8U1Y5) 30S ribosomal protein S8e| Length = 127 Score = 35.8 bits (81), Expect = 0.078 Identities = 20/64 (31%), Positives = 31/64 (48%) Frame = -2 Query: 423 IISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCIN 244 II V +NP + ++T+G IIE + + A+VT+ P DG +N Sbjct: 77 IIRVIENPANRQFARRNIITKGAIIETEIGK---------------AKVTSRPGQDGVVN 121 Query: 243 AVLL 232 A+LL Sbjct: 122 AILL 125
>RS8E_PYRAB (Q9UZL4) 30S ribosomal protein S8e| Length = 127 Score = 35.8 bits (81), Expect = 0.078 Identities = 20/64 (31%), Positives = 31/64 (48%) Frame = -2 Query: 423 IISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCIN 244 II V +NP + ++T+G IIE + + A+VT+ P DG +N Sbjct: 77 IIRVIENPANRQFARRNIITKGAIIETEIGK---------------AKVTSRPGQDGVVN 121 Query: 243 AVLL 232 A+LL Sbjct: 122 AILL 125
>RS8E_THEAC (Q9HJD0) 30S ribosomal protein S8e| Length = 127 Score = 35.4 bits (80), Expect = 0.10 Identities = 21/64 (32%), Positives = 29/64 (45%) Frame = -2 Query: 423 IISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCIN 244 II+VK NP Y ++ +GT+I + + A VT+ P DG IN Sbjct: 78 IITVKANPANSHYVQRNIINKGTVIATEIGD---------------AVVTSRPGQDGVIN 122 Query: 243 AVLL 232 A LL Sbjct: 123 AKLL 126
>RS8E_NANEQ (P61301) 30S ribosomal protein S8e| Length = 127 Score = 35.0 bits (79), Expect = 0.13 Identities = 20/69 (28%), Positives = 34/69 (49%) Frame = -2 Query: 438 TFNLDIISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPEN 259 T I+ NP+ + +G++T+G I+E +ELG V ++T+ P Sbjct: 73 TVKAKIVRFLDNPSNRNFARMGILTKGAIVE---TELGKV------------KITSRPGQ 117 Query: 258 DGCINAVLL 232 DG +N VL+ Sbjct: 118 DGVLNGVLI 126
>RS8E_METKA (Q8TV55) 30S ribosomal protein S8e| Length = 133 Score = 35.0 bits (79), Expect = 0.13 Identities = 24/64 (37%), Positives = 32/64 (50%) Frame = -2 Query: 423 IISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCIN 244 I V KNP Y GV+T+G II +E+GL A+VTN P + +N Sbjct: 78 IEEVVKNPASQYYERHGVITKGAIIR---TEIGL------------AKVTNRPGQEPVVN 122 Query: 243 AVLL 232 AVL+ Sbjct: 123 AVLI 126
>RS8E_SULTO (Q976K3) 30S ribosomal protein S8e| Length = 128 Score = 34.7 bits (78), Expect = 0.17 Identities = 22/64 (34%), Positives = 33/64 (51%) Frame = -2 Query: 423 IISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCIN 244 I+SV + P Y G++ +G+II+ T GK A+VT+ P DG IN Sbjct: 78 ILSVIETPANKEYARRGIIVKGSIIQ---------TELGK------AKVTSRPGQDGTIN 122 Query: 243 AVLL 232 A+L+ Sbjct: 123 AILI 126
>RS8E_HALMA (P49402) 30S ribosomal protein S8e (HS23)| Length = 123 Score = 34.7 bits (78), Expect = 0.17 Identities = 20/69 (28%), Positives = 33/69 (47%) Frame = -2 Query: 438 TFNLDIISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPEN 259 T I +V +NP+ P Y ++T+G I+E + + A+VT+ P Sbjct: 69 TIEATIENVVENPSNPNYARRNIITKGAILETSEGQ---------------ARVTSRPGQ 113 Query: 258 DGCINAVLL 232 G +NAVL+ Sbjct: 114 HGQVNAVLV 122
>PER_DROPS (P12348) Period circadian protein| Length = 1241 Score = 32.7 bits (73), Expect = 0.66 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 3/79 (3%) Frame = +2 Query: 119 GSIPKTSMNCNTDKIALVRPDTNSALIPSTRIVSKLHTSKTALIQPSFSG---LFVT*AY 289 G+ PK N+ + P+ A IP V HT+ TA+ Q SFS LF T Y Sbjct: 940 GNKPKQQPTLNSVGVGTGAPE---APIPP---VHPTHTTHTAIAQSSFSAQQSLFPTFYY 993 Query: 290 LPQTTFPAGVTRPSSLTFT 346 +P T A P +L+ T Sbjct: 994 IPATPLAASTPAPGALSPT 1012
>RS8E_METMP (P61300) 30S ribosomal protein S8e| Length = 128 Score = 32.7 bits (73), Expect = 0.66 Identities = 23/64 (35%), Positives = 30/64 (46%) Frame = -2 Query: 423 IISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCIN 244 + +V N Y VMT+G IIE T GK A+VT+ P DG +N Sbjct: 78 VTNVIDNKANKHYIRRNVMTKGAIIE---------TEMGK------AKVTSRPGQDGVVN 122 Query: 243 AVLL 232 A+LL Sbjct: 123 AILL 126
>PER_DROYA (Q24767) Period circadian protein| Length = 1208 Score = 31.6 bits (70), Expect = 1.5 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = +2 Query: 203 STRIVSKLHTSKTALIQPSFS--GLFVT*AYLPQTTFPAGVTR 325 S I +H++ TA+ Q SFS GLF T Y+P + P TR Sbjct: 923 SVGITPPVHSTHTAMAQSSFSSAGLFPTFYYIPASLTPTSPTR 965
>RS8E_PYRAE (Q8ZTB8) 30S ribosomal protein S8e| Length = 131 Score = 31.6 bits (70), Expect = 1.5 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = -2 Query: 423 IISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCIN 244 IIS+ P P + + +G++I+ V + A VT+ P DG IN Sbjct: 82 IISIISTPANPDFARRNFIVKGSVIQTEVGK---------------ALVTSRPGQDGVIN 126 Query: 243 AVLL 232 AVL+ Sbjct: 127 AVLI 130
>PER_DROME (P07663) Period circadian protein (Clock-6 protein) (CLK-6)| Length = 1224 Score = 31.6 bits (70), Expect = 1.5 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = +2 Query: 203 STRIVSKLHTSKTALIQPSFS--GLFVT*AYLPQTTFPAGVTR 325 S I +H++ TA+ Q SFS GLF T Y+P + P TR Sbjct: 942 SVGITPPVHSTHTAMAQSSFSSAGLFPTFYYIPASLTPTSPTR 984
>ARFE_ARATH (P93024) Auxin response factor 5 (Transcription factor MONOPTEROS)| (Auxin-responsive protein IAA24) Length = 902 Score = 31.2 bits (69), Expect = 1.9 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 2/84 (2%) Frame = +1 Query: 205 NQNCIKASHEQDSIDTAIILRVICNLSVFAPNNF--SSRGYETKFTNIHLDNCSPRHNTK 378 N N A Q I +A + F+ +F +S G T +N+ D+CS R N+K Sbjct: 725 NNNTSFAQDVQSQITSASF----ADSQAFSRQDFPDNSGGTGTSSSNVDFDDCSLRQNSK 780 Query: 379 RSVHWTVWVFLHRNYVEVERTFSV 450 S + R Y +V++T SV Sbjct: 781 GSSWQKIATPRVRTYTKVQKTGSV 804
>RS8E_METMA (Q8PVC6) 30S ribosomal protein S8e| Length = 125 Score = 31.2 bits (69), Expect = 1.9 Identities = 22/69 (31%), Positives = 31/69 (44%) Frame = -2 Query: 438 TFNLDIISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPEN 259 T I +V N Y ++T+G++I TP G A+VT+ P Sbjct: 71 TVTATIETVIDNTANKHYVRRNILTKGSVIR---------TPVGT------ARVTSRPGQ 115 Query: 258 DGCINAVLL 232 DG INAVL+ Sbjct: 116 DGVINAVLI 124
>RMT2_CANGA (Q6FMP0) Arginine N-methyltransferase 2 (EC 2.1.1.-)| Length = 412 Score = 30.8 bits (68), Expect = 2.5 Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 2/54 (3%) Frame = +2 Query: 95 QLDITLESGS--IPKTSMNCNTDKIALVRPDTNSALIPSTRIVSKLHTSKTALI 250 ++DI E+ + +PK +++ +T K++ V D +A P T + +KL ++ ALI Sbjct: 157 EIDICAEASAEVVPKDALDDSTGKVSSVSDDDATAADPDTYLNTKLKYTEDALI 210
>TOP2_ASFB7 (Q00942) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1192 Score = 30.8 bits (68), Expect = 2.5 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Frame = -2 Query: 411 KKNPNGPMYTSLGVMTRGTIIEVNVSEL-GLVTPAGKVVWGKYAQVTNNPENDGCINAV 238 K NP+GP + G+++ G +I ++ + T +G+ + + Q+TNN G + + Sbjct: 454 KSNPSGPSFDFCGMISLGGVIMNACKKVTNITTDSGETIMVRNEQLTNNKVLQGIVQVL 512
>TOP2_ASFM2 (P34203) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1191 Score = 30.8 bits (68), Expect = 2.5 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Frame = -2 Query: 411 KKNPNGPMYTSLGVMTRGTIIEVNVSEL-GLVTPAGKVVWGKYAQVTNNPENDGCINAV 238 K NP+GP + G+++ G +I ++ + T +G+ + + Q+TNN G + + Sbjct: 453 KSNPSGPSFDFCGMISLGGVIMNACKKVTNITTDSGETIMVRNEQLTNNKVLQGIVQVL 511
>NU2M_LUMTE (Q34951) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 335 Score = 29.6 bits (65), Expect = 5.6 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Frame = +2 Query: 311 AGVTRPSSLTFTSIIVPLVITPREVYIGPFGFFFTEIMSRLN-----VHFQFXVSHMSLG 475 A V +PSS ++ ++ITP + +G F T+ MS+L+ VH + +SLG Sbjct: 191 AAVYKPSSCIMYFVVYCILITPLFMTMGYLNMFSTKHMSKLSSYSSTVHMALLMVLLSLG 250
>WRK46_ARATH (Q9SKD9) Probable WRKY transcription factor 46 (WRKY DNA-binding| protein 46) Length = 295 Score = 29.6 bits (65), Expect = 5.6 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 4/72 (5%) Frame = +1 Query: 181 YKQCTHPFNQNCIKASHEQDSIDTAIILRVICNLSVFAPNNFSSRGYETKF----TNIHL 348 Y +CTH F Q+C+ Q S DT L + L NN +S T F TN ++ Sbjct: 126 YYRCTHRFTQDCLAVKQVQKS-DTDPSLFEVKYLGNHTCNNITSPKTTTNFSVSLTNTNI 184 Query: 349 DNCSPRHNTKRS 384 + H T++S Sbjct: 185 FEGNRVHVTEQS 196
>PGPLA_DROME (Q95T64) Peptidoglycan-recognition protein-LA| Length = 368 Score = 29.6 bits (65), Expect = 5.6 Identities = 21/68 (30%), Positives = 30/68 (44%) Frame = +2 Query: 221 KLHTSKTALIQPSFSGLFVT*AYLPQTTFPAGVTRPSSLTFTSIIVPLVITPREVYIGPF 400 +LH +A S SGL LPQ F +PSS+ + +VI P Y GP Sbjct: 28 RLHNLTSAGSSTSSSGL-----PLPQNIFTNPAIQPSSVINLNHSTDVVIGPMTQYQGPV 82 Query: 401 GFFFTEIM 424 ++ + M Sbjct: 83 SIYYMDYM 90
>RS8E_HALSA (Q9HPE9) 30S ribosomal protein S8e| Length = 124 Score = 29.3 bits (64), Expect = 7.3 Identities = 21/61 (34%), Positives = 27/61 (44%) Frame = -2 Query: 423 IISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPENDGCIN 244 I V N P Y ++T+G IIE T AG A+VT+ P DG +N Sbjct: 74 IEDVSANDANPNYARRNIITKGAIIE---------TDAGT------ARVTSRPGQDGQVN 118 Query: 243 A 241 A Sbjct: 119 A 119
>TRPE_THEMA (Q08653) Anthranilate synthase component 1 (EC 4.1.3.27)| (Anthranilate synthase component I) Length = 461 Score = 28.9 bits (63), Expect = 9.5 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +2 Query: 296 QTTFPAG-VTRPSSLTFTSIIVPLVITPREVYIGPFGFF-FTEIMSRLNV 439 + TFPAG V+ + II L TPR Y G G+F F + R+N+ Sbjct: 353 EATFPAGTVSGAPKVRAMEIIEELEPTPRGPYAGAVGYFSFPDDKGRMNM 402
>U520_HUMAN (O75643) U5 small nuclear ribonucleoprotein 200 kDa helicase (EC| 3.6.1.-) (U5 snRNP-specific 200 kDa protein) (U5-200KD) (Activating signal cointegrator 1 complex subunit 3-like 1) (BRR2 homolog) Length = 2136 Score = 28.9 bits (63), Expect = 9.5 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 11/60 (18%) Frame = +1 Query: 319 YETKFTNIHLDNCSPRH-----------NTKRSVHWTVWVFLHRNYVEVERTFSVXGESH 465 YE HLD+C H N + +V + W FL+R + +++ G SH Sbjct: 1719 YEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISH 1778
>ATS19_HUMAN (Q8TE59) ADAMTS-19 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 19) (ADAM-TS 19) (ADAM-TS19) Length = 1207 Score = 28.9 bits (63), Expect = 9.5 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 4/35 (11%) Frame = +2 Query: 437 VHFQFXVSHMSLGETQTSRSDEPLILW----WLPC 529 +H+++ + L E Q+S++ EPL +W W C Sbjct: 893 LHYEYTIPSDPLPENQSSKAPEPLFMWTHTSWEDC 927
>RS8E_METAC (Q8TS82) 30S ribosomal protein S8e| Length = 125 Score = 28.9 bits (63), Expect = 9.5 Identities = 18/69 (26%), Positives = 30/69 (43%) Frame = -2 Query: 438 TFNLDIISVKKNPNGPMYTSLGVMTRGTIIEVNVSELGLVTPAGKVVWGKYAQVTNNPEN 259 T I +V N Y ++T+G++I ++ A+VT+ P Sbjct: 71 TVTAPIETVIDNTANKHYVRRNILTKGSVIRTSMGT---------------ARVTSRPGQ 115 Query: 258 DGCINAVLL 232 DG +NAVL+ Sbjct: 116 DGVVNAVLI 124 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,709,146 Number of Sequences: 219361 Number of extensions: 1636257 Number of successful extensions: 3765 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 3671 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3751 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
