ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20p17 |
|---|---|
| Clone Library Name | barley_pub |
>RUBR1_CHLTE (P58992) Rubredoxin 1 (Rd 1)| Length = 69 Score = 41.2 bits (95), Expect = 0.002 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 11/52 (21%) Frame = -2 Query: 367 RATHICLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRFARY 245 +A+ +C +CGYIY + PF++ P ++ CP CN PK +F ++ Sbjct: 14 QASWMCAECGYIYDPAEGNLETNIRPGMPFDKLPDDWSCPVCNHPKNQFTKF 65
>RUBR2_PSEOL (P00272) Rubredoxin 2 (Two-iron rubredoxin)| Length = 172 Score = 37.0 bits (84), Expect = 0.032 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 13/68 (19%) Frame = -2 Query: 409 PPRFGRKLSDSQ--KARATHICLDCGYIY----------FLPKP-FEEQPGEYGCPQCNA 269 PPR SD+Q KA IC+ CG+IY F P FE+ P ++ CP C A Sbjct: 107 PPR-----SDAQGGKAYLKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGA 161 Query: 268 PKKRFARY 245 K+ + Y Sbjct: 162 TKEDYVLY 169
>RUBR_METTH (O26258) Probable rubredoxin (RD)| Length = 63 Score = 34.7 bits (78), Expect = 0.16 Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 11/44 (25%) Frame = -2 Query: 352 CLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRF 254 C CGYIY K PFE+ P + CP C A KK F Sbjct: 16 CRVCGYIYDPEKGEPRTDTPPGTPFEDLPETWRCPSCGAKKKMF 59
>RUBR_SYNY3 (P73068) Rubredoxin (Rd)| Length = 115 Score = 34.7 bits (78), Expect = 0.16 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 11/53 (20%) Frame = -2 Query: 379 SQKARATHICLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRF 254 ++ A H C CGY+Y + PFE P + CP C AP+ F Sbjct: 11 AELASPNHECRACGYVYIPSQGDQKTSVSPGTPFEALPLNWKCPVCGAPRNYF 63
>RUBR_PYRFU (P24297) Rubredoxin (Rd)| Length = 53 Score = 34.3 bits (77), Expect = 0.20 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 11/50 (22%) Frame = -2 Query: 364 ATHICLDCGYIY----------FLP-KPFEEQPGEYGCPQCNAPKKRFAR 248 A +C CGYIY P FEE P ++ CP C APK F + Sbjct: 1 AKWVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEFEK 50
>RUBR_ANAVT (Q9XBL8) Rubredoxin (Rd)| Length = 111 Score = 33.5 bits (75), Expect = 0.35 Identities = 29/98 (29%), Positives = 37/98 (37%), Gaps = 25/98 (25%) Frame = -2 Query: 352 CLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRFA-----------RYNV 239 C CGY+Y K PF E P + CP C A K F+ R N+ Sbjct: 16 CRSCGYVYEPEKGDSKHDIAPETPFAELPINWRCPVCTAKKAAFSNIGPAGTASGFRENL 75 Query: 238 ESGKPIGGALPPLTVIVSLVIGIAGIGALL---VYGLQ 134 G + P I L+ G +G L +YGLQ Sbjct: 76 GYGLGVNKLTPAQKNI--LIFGALALGFLFFISLYGLQ 111
>RUBR_PYRAB (Q9V099) Rubredoxin (Rd)| Length = 53 Score = 33.5 bits (75), Expect = 0.35 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 11/46 (23%) Frame = -2 Query: 352 CLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRFAR 248 C CGYIY + FE+ P ++ CP C APK F R Sbjct: 6 CKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFER 51
>RUBR_ANASP (Q9WWN1) Rubredoxin (Rd)| Length = 111 Score = 33.1 bits (74), Expect = 0.46 Identities = 29/98 (29%), Positives = 36/98 (36%), Gaps = 25/98 (25%) Frame = -2 Query: 352 CLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRFA-----------RYNV 239 C CGY+Y K PF E P + CP C A K F R N+ Sbjct: 16 CRSCGYVYEPEKGDNKHDIAPETPFAELPINWRCPVCTAKKAAFTNIGPAGTASGFRENL 75 Query: 238 ESGKPIGGALPPLTVIVSLVIGIAGIGALL---VYGLQ 134 G + P I L+ G +G L +YGLQ Sbjct: 76 GYGLGVNKLTPAQKNI--LIFGALALGFLFFISLYGLQ 111
>RDRP_TVCV (Q88920) RNA-directed RNA polymerase (EC 2.7.7.48) (180 kDa protein)| [Contains: Methyltransferase/RNA helicase (MT/HEL) (125 kDa protein)] Length = 1601 Score = 32.7 bits (73), Expect = 0.60 Identities = 27/107 (25%), Positives = 44/107 (41%) Frame = -2 Query: 430 RLPKRPAPPRFGRKLSDSQKARATHICLDCGYIYFLPKPFEEQPGEYGCPQCNAPKKRFA 251 R+ P P F + ++D ++ R + YFL K ++ G C + +R Sbjct: 933 RVANFPYPAHFAKLVADEKEVRRVTLRCPADVTYFLNKKYD------GAVMCTSAVERSV 986 Query: 250 RYNVESGKPIGGALPPLTVIVSLVIGIAGIGALLVYGLQ*AFSSLEK 110 + V GK GAL P+T+ + G +L + F LEK Sbjct: 987 KAEVVRGK---GALNPITLPLE--------GKILTFTQADKFELLEK 1022
>RUBR_DESVM (P15412) Rubredoxin (Rd)| Length = 52 Score = 32.0 bits (71), Expect = 1.0 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 11/46 (23%) Frame = -2 Query: 358 HICLDCGYIYFLP--------KP---FEEQPGEYGCPQCNAPKKRF 254 ++C CGY Y KP FE+ P ++ CP C APK F Sbjct: 4 YVCTVCGYEYDPAEGDPDNGVKPGTAFEDVPADWVCPICGAPKSEF 49
>RUBR2_DESDE (Q93PP8) Rubredoxin 2 (Rd-2)| Length = 61 Score = 32.0 bits (71), Expect = 1.0 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 11/50 (22%) Frame = -2 Query: 349 LDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRFARYNVES 233 ++CGY+Y + FE+ P ++ CP C A KK F R + E+ Sbjct: 12 VNCGYVYDPDRGDKRRKVPAGTKFEDLPEDWRCPVCGAGKKSFRRLSDEA 61
>RUBR_DESVH (P00269) Rubredoxin (Rd)| Length = 52 Score = 31.2 bits (69), Expect = 1.7 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 11/46 (23%) Frame = -2 Query: 358 HICLDCGYIYFLP--------KP---FEEQPGEYGCPQCNAPKKRF 254 ++C CGY Y KP F++ P ++ CP C APK F Sbjct: 4 YVCTVCGYEYDPAEGDPDNGVKPGTSFDDLPADWVCPVCGAPKSEF 49
>RUBR1_DESDE (P04170) Rubredoxin 1 (Rd-1)| Length = 45 Score = 31.2 bits (69), Expect = 1.7 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 4/40 (10%) Frame = -2 Query: 358 HICLDCGYIYFLPK----PFEEQPGEYGCPQCNAPKKRFA 251 ++C CGY Y + PF++ P ++ CP C K +F+ Sbjct: 4 YVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVSKDQFS 43
>RUBL_BRAJA (P48344) Probable rubredoxin hupI| Length = 69 Score = 31.2 bits (69), Expect = 1.7 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -2 Query: 316 PFEEQPGEYGCPQCNAPKKRF 254 PF P E+ CP C+APK +F Sbjct: 44 PFAALPEEWHCPNCDAPKSKF 64
>SPRL_OCEIH (Q8ESK0) Protein sprT-like| Length = 150 Score = 31.2 bits (69), Expect = 1.7 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Frame = -2 Query: 448 GDIDVKRLPKRPAPPRFGRKLSDSQKA-RATHICLDCGYIYFLPKPFEEQPGEYGCPQCN 272 GD D K L K PR L Q+ R + C+ CG++Y + + +Y C +C Sbjct: 87 GDRDFKELLKATGSPRHCSPLPSQQREYRYKYQCIQCGFVYKRVRKVNMR--KYRCGKCR 144 Query: 271 APKK 260 K Sbjct: 145 GSLK 148
>TOP2_ARATH (P30182) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1473 Score = 31.2 bits (69), Expect = 1.7 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Frame = -2 Query: 460 SRGGGDIDVKR-LPKRPAPPRFGRKLSDSQKARATHICLD 344 ++ G + VKR PK+PAP + +K S+S+ A++ +D Sbjct: 1193 AKSGAAVKVKRQAPKKPAPKKTTKKASESETTEASYSAMD 1232
>EMAL4_HUMAN (Q9HC35) Echinoderm microtubule-associated protein-like 4 (EMAP-4)| (Restrictedly overexpressed proliferation-associated protein) (Ropp 120) Length = 981 Score = 31.2 bits (69), Expect = 1.7 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -3 Query: 321 PSPLKNSLVSTAVPSAMHQRSDSQDTT*SLGSPLAE 214 P+ L+NSL T PS H +S++ + LG PL E Sbjct: 920 PTLLENSLEQTVEPSEDHSEEESEEGSGDLGEPLYE 955
>ZN516_MOUSE (Q7TSH3) Zinc finger protein 516| Length = 1157 Score = 30.8 bits (68), Expect = 2.3 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 6/58 (10%) Frame = -2 Query: 427 LPKRPAPPRFGRKLSDSQKARATHICLDCGYIY----FLPKPFEEQPGE--YGCPQCN 272 L + P+PPR GR A H C CG + L + + GE Y CP C+ Sbjct: 11 LRRGPSPPRAGRSHEVDGDKAACHSCCICGKSFPFQSSLSQHMRKHTGEKPYKCPYCD 68
>RUBR_HELMO (P56263) Rubredoxin (Rd)| Length = 52 Score = 30.8 bits (68), Expect = 2.3 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 11/44 (25%) Frame = -2 Query: 352 CLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRF 254 CL CGY+Y K FE+ P ++ CP C K F Sbjct: 6 CLVCGYVYDPAKGDPDHGIAPGTAFEDLPADWVCPLCGVSKDEF 49
>RUBR_DESGI (P00270) Rubredoxin (Rd)| Length = 52 Score = 30.8 bits (68), Expect = 2.3 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 11/48 (22%) Frame = -2 Query: 358 HICLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRFAR 248 ++C CGY Y K FE+ P ++ CP C A K F + Sbjct: 4 YVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEK 51
>DP2L_PYRHO (O57861) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)| [Contains: Pho polC intein (Pho pol II intein)] Length = 1431 Score = 30.4 bits (67), Expect = 3.0 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 11/77 (14%) Frame = -2 Query: 358 HICLDCG----YIYFLPKPFEEQPGE------YGCPQCNAPKKRFARYNVESGKPIGGAL 209 HIC +CG I+ P+ E P Y CP+CN K +A+ ++ + + A+ Sbjct: 713 HICPNCGTRKELIWVCPRCNAEYPESQASGYNYTCPKCNVKLKPYAKRKIKPSELLKRAM 772 Query: 208 PPLTVI-VSLVIGIAGI 161 + V + + G+ G+ Sbjct: 773 DNVKVYGIDKLKGVMGM 789
>RAG1_HUMAN (P15918) V(D)J recombination-activating protein 1 (RAG-1) (RING| finger protein 74) Length = 1043 Score = 30.0 bits (66), Expect = 3.9 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 10/66 (15%) Frame = -2 Query: 505 KTAIQAKP--DSVYFVVSRGGGDIDVKRLPKRPAPPRFGRKLSDSQKARA--------TH 356 K + + KP + V+ + G V P A P+F +K D++KAR H Sbjct: 50 KDSFEGKPSLEQSPAVLDKADGQKPVPTQPLLKAHPKFSKKFHDNEKARGKAIHQANLRH 109 Query: 355 ICLDCG 338 +C CG Sbjct: 110 LCRICG 115
>COG3_YEAST (P40094) Conserved oligomeric Golgi complex component 3 (SEC34| protein) Length = 801 Score = 30.0 bits (66), Expect = 3.9 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -3 Query: 375 RRLEQHTSALIVDTYTFYPSPLKNSLVSTAVPSAMH 268 R++ Q T A I +T T Y K S ++ ++P A+H Sbjct: 119 RKISQDTGAFIEETKTIYEKQSKLSNLTESIPKALH 154
>HRB_MOOTA (Q9FDN6) High molecular weight rubredoxin (Nitric oxide reductase| NADH:FprA oxidoreductase) Length = 229 Score = 29.6 bits (65), Expect = 5.0 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 13/74 (17%) Frame = -2 Query: 436 VKRLPKRPAPPRF--GRKLSDSQKARATHICLDCGYIY----------FLP-KPFEEQPG 296 VKR P F GR+ + A + C C Y+Y P PF + P Sbjct: 153 VKRGTTPKTAPTFTVGREKDKTALASPKYQCTICNYVYDPVQGDPEHGIAPGTPFADLPE 212 Query: 295 EYGCPQCNAPKKRF 254 ++ CP C A K F Sbjct: 213 DWTCPICGAGKDAF 226
>FABZ_PSEPK (Q88MG9) (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase| (EC 4.2.1.-) ((3R)-hydroxymyristoyl ACP dehydrase) Length = 146 Score = 29.6 bits (65), Expect = 5.0 Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 13/116 (11%) Frame = +3 Query: 27 LPHHY*NFLLDRVHEKSVELVDAWPEQNFSRDEKAY*RPYTSKAPMPAMPITKLTITVRG 206 LPH Y L+DRV + E +N S +E + + + MP + L I Sbjct: 11 LPHRYPFLLVDRVTDLDFEAQSIRAYKNVSINEPFFNGHFPAHPIMPGV----LIIEAMA 66 Query: 207 GSAPPMGF-------PDSTLYLANRFFGA--LHWGQPYSPG----CSSKGLGRKYM 335 +A +GF D TLY F G+ L + QP PG +K L RK M Sbjct: 67 QAAGILGFKMLDAKPADGTLYY---FVGSDKLRFRQPVLPGDQLVLEAKFLSRKSM 119
>RUBR_CLOAB (Q9AL94) Rubredoxin (Rd)| Length = 54 Score = 29.6 bits (65), Expect = 5.0 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 11/46 (23%) Frame = -2 Query: 358 HICLDCGYIYFLPK-----------PFEEQPGEYGCPQCNAPKKRF 254 ++C+ CGYIY + FE+ P ++ CP C K +F Sbjct: 4 YVCVVCGYIYDPAEGDPDNGVNPGTSFEDIPDDWVCPLCGVGKDQF 49
>KV5L_MOUSE (P01645) Ig kappa chain V-V region HP 93G7| Length = 108 Score = 29.3 bits (64), Expect = 6.6 Identities = 18/62 (29%), Positives = 22/62 (35%) Frame = +3 Query: 231 PDSTLYLANRFFGALHWGQPYSPGCSSKGLGRKYMYPQSRQMCVALAFCESDNFRPNRGG 410 PD T+ L + LH G P S G Q +A FC+ N P G Sbjct: 40 PDGTVKLLIYYTSRLHSGVPSRFSGSGSGTDYSLTISNLEQEDIATYFCQQGNMLPRTFG 99 Query: 411 AG 416 G Sbjct: 100 GG 101
>HUPJ_RHOCA (Q03009) Probable rubredoxin hupJ| Length = 278 Score = 29.3 bits (64), Expect = 6.6 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = -2 Query: 316 PFEEQPGEYGCPQCNAPKKRF 254 PF P ++ CP C+APK +F Sbjct: 51 PFTALPEDWHCPNCDAPKAQF 71
>C78A1_MAIZE (P48420) Cytochrome P450 78A1 (EC 1.14.-.-) (CYPLXXVIII)| Length = 547 Score = 29.3 bits (64), Expect = 6.6 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%) Frame = -2 Query: 499 AIQAKPDSVY---FVVSRGGGDIDVKRLPKRPAPPRFGRKLSDSQKARATHICL 347 A+ A PD+ F+ S GG D+DV+ + R AP GR++ + T + L Sbjct: 449 AVWADPDAFAPERFLPSEGGADVDVRGVDLRLAPFGAGRRVCPGKNLGLTTVGL 502
>CDCP1_MOUSE (Q5U462) CUB domain-containing protein 1 precursor (Transmembrane| and associated with src kinases) (Membrane glycoprotein gp140) (CD318 antigen) Length = 833 Score = 29.3 bits (64), Expect = 6.6 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 13/57 (22%) Frame = -2 Query: 268 PKKRFARY----NVESGKPIGG---------ALPPLTVIVSLVIGIAGIGALLVYGL 137 PK F + N+ + P+ G L P TV +++VIG AG GALL++ L Sbjct: 627 PKPSFHHHSFWVNISNCSPMNGKQLDLLFWVTLTPRTVDLAVVIGAAGGGALLLFAL 683
>CHEB2_PSEF5 (Q4KG36) Chemotaxis response regulator protein-glutamate| methylesterase 2 (EC 3.1.1.61) Length = 373 Score = 29.3 bits (64), Expect = 6.6 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 11/109 (10%) Frame = -2 Query: 499 AIQAKPDSVY--FVVSRGGGDIDVKRLPKRPAPPRFGRKLSDSQKARATHICLDCGYIYF 326 A+ KPD + + + G V+ + +R P + AR T LD G + F Sbjct: 44 ALALKPDVITMDYEMPMMDGITAVRHIMQRCPTPVLMFSSLTHEGARVTLDALDAGAVDF 103 Query: 325 LPKPFE------EQPGEYGCPQCNA---PKKRFARYNVESGKPIGGALP 206 LPK FE E+ + C + ++ +RF+ Y+ + +P P Sbjct: 104 LPKNFEDISRNPEKVKQLLCEKVHSISRSNRRFSSYSAPAPQPASAPAP 152
>ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7| Length = 542 Score = 29.3 bits (64), Expect = 6.6 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -1 Query: 494 PSKARLCILCSKQGWW*Y*CEAPAQE 417 P K R C LCS++G Y C AP E Sbjct: 258 PRKVRRCFLCSRRGHLLYSCPAPLCE 283
>ZNHI2_HUMAN (Q9UHR6) Zinc finger HIT domain-containing protein 2 (Protein FON)| Length = 403 Score = 28.9 bits (63), Expect = 8.6 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = -2 Query: 310 EEQPGEYGCPQCNAP 266 E QP Y CP+CNAP Sbjct: 14 EVQPARYTCPRCNAP 28
>YFHE_SCHPO (O42851) Hypothetical protein C23A1.14c in chromosome I| Length = 398 Score = 28.9 bits (63), Expect = 8.6 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -3 Query: 408 PLGLAGSCLIHRRLEQHTSALIVDTYTFYPSPLKNSLV 295 PLG+A ++ L + A++V TF P P++++LV Sbjct: 163 PLGIAFDIPFYKELAKKKGAILVVDSTFAPPPIQDALV 200
>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing mediator| of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) (CTG repeat p Length = 2517 Score = 28.9 bits (63), Expect = 8.6 Identities = 39/139 (28%), Positives = 51/139 (36%), Gaps = 22/139 (15%) Frame = +3 Query: 141 PYTSKAPMPAMPITKLTITVRGGSAPPMGF--PDSTLYLANRFFGALHWGQPYSPG---- 302 P AP+PA P+ G S P + P S LYL GA G P+S G Sbjct: 2152 PQQLSAPLPA-PLYSFP----GASCPVLDLRRPPSDLYLPPPDHGAPARGSPHSEGGKRS 2206 Query: 303 -----CSSKGLGRKYMYP-----------QSRQMCVALAFCESDNFRPNRGGAGLLGRRF 434 S G G + P SR L + + + P+R G+ G Sbjct: 2207 PEPNKTSVLGGGEDGIEPVSPPEGMTEPGHSRSAVYPLLYRDGEQTEPSRMGSKSPG--- 2263 Query: 435 TSISPPPLLTTKYTESGFA 491 + S PP +K TES A Sbjct: 2264 -NTSQPPAFFSKLTESNSA 2281
>RPOB_EHRRI (Q93MK8) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1363 Score = 28.9 bits (63), Expect = 8.6 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 7/72 (9%) Frame = -2 Query: 511 FTKTAIQAKPDSVYFVVSRGGGDIDVKRLPKRPAPPRFGRKL------SDSQKARATH-I 353 F + AI K S+Y G +DVK L +R + GR L D++KAR H + Sbjct: 903 FGEKAIDVKDSSLYLPPGVSGCVVDVKVLQRR-GIEKVGRALLIEKQAIDAEKARRDHEL 961 Query: 352 CLDCGYIYFLPK 317 + YIY L K Sbjct: 962 AVLTNYIYSLLK 973 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,707,952 Number of Sequences: 219361 Number of extensions: 1888021 Number of successful extensions: 5761 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 5568 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5748 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3812186532 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
