ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21e22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196819.1| Oryza sativa (japonica cultivar-group) putative... 301 1e-78
2dbj|AK102843.1| Oryza sativa (japonica cultivar-group) cDNA clon... 301 1e-78
3ref|XM_470212.1| Oryza sativa (japonica cultivar-group), predic... 163 8e-37
4dbj|AK061250.1| Oryza sativa (japonica cultivar-group) cDNA clon... 163 8e-37
5dbj|AK099130.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 2e-34
6gb|AY108713.1| Zea mays PCO101165 mRNA sequence 135 2e-28
7gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome... 131 3e-27
8dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 131 3e-27
9gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 131 3e-27
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 94 6e-16
11gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nippon... 94 6e-16
12dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 94 6e-16
13emb|AJ865107.1| Cocos nucifera microsatellite DNA, clone CnCir J2 62 2e-06
14gb|AC122164.6| Medicago truncatula clone mth2-24h4, complete seq... 60 8e-06
15emb|Z73936.1|LJRAB1Y L.japonicus mRNA for small GTP-binding prot... 54 5e-04
16emb|AJ719773.1| Gallus gallus mRNA for hypothetical protein, clo... 48 0.032
17ref|NM_001006355.1| Gallus gallus RAB18, member RAS oncogene fam... 48 0.032
18ref|NM_066927.2| Caenorhabditis elegans RAB family member (rab-3... 46 0.13
19ref|NM_103516.2| Arabidopsis thaliana ATRAB18; GTP binding AT1G4... 44 0.49
20ref|XM_868299.1| PREDICTED: Bos taurus similar to RAB18, member ... 44 0.49
21gb|AC073109.2| Homo sapiens BAC clone RP11-502P9 from 7, complet... 44 0.49
22gb|AY063080.1| Arabidopsis thaliana putative GTP-binding protein... 44 0.49
23gb|AF370263.1| Arabidopsis thaliana putative GTP-binding protein... 44 0.49
24gb|AY086878.1| Arabidopsis thaliana clone 2898 mRNA, complete se... 44 0.49
25gb|U75603.1|ATU75603 Arabidopsis thaliana AtRab18 (AtRAB18) mRNA... 44 0.49
26emb|AL672200.10| Mouse DNA sequence from clone RP23-37G19 on chr... 44 0.49
27ref|NM_111826.3| Arabidopsis thaliana GTP binding AT3G09910 mRNA... 42 2.0
28gb|AC154039.17| Mus musculus 10 BAC RP23-282M20 (Roswell Park Ca... 42 2.0
29gb|AC068066.3| Mus musculus strain C57BL6/J chromosome 6 clone R... 42 2.0
30gb|BT012396.1| Arabidopsis thaliana At3g09910 mRNA, complete cds 42 2.0
31gb|BT012209.1| Arabidopsis thaliana At3g09910 gene, complete cds 42 2.0
32gb|AC015985.10|ATAC015985 Arabidopsis thaliana chromosome III BA... 42 2.0
33emb|Y11479.1|SM11479 S.mansoni mRNA for Ras protein, partial 42 2.0
34gb|U53177.1|SMU53177 Schistosoma mansoni ras protein homolog Psm... 42 2.0
35emb|BX824504.1|CNS0A7BF Arabidopsis thaliana Full-length cDNA Co... 42 2.0
36gb|AC007009.2|AC007009 Homo sapiens BAC clone RP11-560C1 from 7p... 42 2.0
37gb|AC022314.5|AC022314 Genomic sequence for Arabidopsis thaliana... 42 2.0
38gb|AC006423.7|AC006423 Arabidopsis thaliana chromosome I BAC F28... 42 2.0
39dbj|AK111647.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
40dbj|AK104720.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.0
41gb|AC160060.20| Mus musculus 10 BAC RP23-360L4 (Roswell Park Can... 42 2.0
42gb|AC125027.12| Mus musculus chromosome 8, clone RP24-68F20, com... 40 7.7
43ref|NM_193081.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.7
44gb|AC116850.10| Mus musculus chromosome 8, clone RP24-396C10, co... 40 7.7
45gb|AC183103.2| Pan troglodytes BAC clone CH251-712L4 from chromo... 40 7.7
46ref|XM_534223.2| PREDICTED: Canis familiaris similar to Myeloid ... 40 7.7
47emb|CR533579.6| Zebrafish DNA sequence from clone CH211-232J20 i... 40 7.7
48emb|CR354389.15| Zebrafish DNA sequence from clone CH211-220J14 ... 40 7.7
49ref|XM_783197.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.7
50gb|AC091503.2| Rattus norvegicus strain Brown Norway clone RP31-... 40 7.7
51emb|AL009173.2|HS32F7 Human DNA sequence from clone RP1-32F7 on ... 40 7.7
52ref|XM_780582.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.7
53gb|AC016255.24| Homo sapiens 3 BAC RP11-883M5 (Roswell Park Canc... 40 7.7
54gb|AC026469.8| Homo sapiens chromosome 16 clone RP11-442O1, comp... 40 7.7
55dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
56gb|AC092341.5| Homo sapiens chromosome 16 clone RP11-260K13, com... 40 7.7
57gb|AC079402.5| Homo sapiens BAC clone RP11-597E15 from 2, comple... 40 7.7
58gb|AC093784.3| Homo sapiens BAC clone RP11-211K17 from 2, comple... 40 7.7
59gb|AC092575.3| Homo sapiens BAC clone RP11-4C18 from 2, complete... 40 7.7
60dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
61emb|BX004984.6| Zebrafish DNA sequence from clone DKEY-3N4, comp... 40 7.7
62dbj|AP002026.2| Homo sapiens genomic DNA, chromosome 4q22-q24, c... 40 7.7
63emb|AL844179.12| Zebrafish DNA sequence from clone DKEY-218M22, ... 40 7.7
64emb|AL953891.10| Zebrafish DNA sequence from clone DKEY-28P22, c... 40 7.7
65emb|AL935175.6| Mouse DNA sequence from clone RP23-397E13 on chr... 40 7.7 
>ref|NM_196819.1| Oryza sativa (japonica cultivar-group) putative GTP-binding protein
           (OSJNBa0018F16.14), mRNA
          Length = 669

 Score =  301 bits (152), Expect = 1e-78
 Identities = 299/348 (85%)
 Strand = Plus / Minus

                                                                       
Query: 221 ctattgacagcatctaccaccatactttgcatgactttcctgctgctgtttcagaatgtt 280
           ||||||||||||||  ||||||| |||||| |||||||| |||| ||| |||||||||||
Sbjct: 669 ctattgacagcatccgccaccatgctttgcttgactttcttgcttctgcttcagaatgtt 610

                                                                       
Query: 281 cctcttgacaacggatgacgagccttcctccaggagacttggaacttcaaggatctttag 340
           ||| |||||||| || || ||||||||||||| ||| || || || || |  ||||||||
Sbjct: 609 ccttttgacaaccgaagaggagccttcctccaagaggctagggacatccataatctttag 550

                                                                       
Query: 341 cacaagttcttcaaaacaattctcgacgttttctcgtgtttttgcactgctctcaagaaa 400
             | |||||||||||||| ||||| || || ||||||||||| || || |||||||||||
Sbjct: 549 tgcgagttcttcaaaacacttctcaacattatctcgtgttttcgcgctactctcaagaaa 490

                                                                       
Query: 401 cagacatccggattcttgtgcgaaagcaagaccttcttctcttgtgactgttctctcatc 460
            || ||||| ||||||| ||| || ||||| ||||||||||||||||| ||||| |||||
Sbjct: 489 taggcatccagattcttctgcaaaggcaagcccttcttctcttgtgacagttctttcatc 430

                                                                       
Query: 461 atccttatcaactttgtttccaacaagcatttttatgcagtctttgtttgatgagtttga 520
            ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 429 ctccttgtcaattttgtttccaacaagcatttttatgcagtctttgtttgatgagtgtga 370

                                                           
Query: 521 gtctatctccttagtccatacatcacccaaatttgtgaagctctctct 568
            ||||| |||||| ||||||| ||| ||| |||||||||||| |||||
Sbjct: 369 ctctatttccttactccatacttcagccagatttgtgaagctttctct 322
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>dbj|AK102843.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033109P10, full
           insert sequence
          Length = 1101

 Score =  301 bits (152), Expect = 1e-78
 Identities = 299/348 (85%)
 Strand = Plus / Minus

                                                                       
Query: 221 ctattgacagcatctaccaccatactttgcatgactttcctgctgctgtttcagaatgtt 280
           ||||||||||||||  ||||||| |||||| |||||||| |||| ||| |||||||||||
Sbjct: 851 ctattgacagcatccgccaccatgctttgcttgactttcttgcttctgcttcagaatgtt 792

                                                                       
Query: 281 cctcttgacaacggatgacgagccttcctccaggagacttggaacttcaaggatctttag 340
           ||| |||||||| || || ||||||||||||| ||| || || || || |  ||||||||
Sbjct: 791 ccttttgacaaccgaagaggagccttcctccaagaggctagggacatccataatctttag 732

                                                                       
Query: 341 cacaagttcttcaaaacaattctcgacgttttctcgtgtttttgcactgctctcaagaaa 400
             | |||||||||||||| ||||| || || ||||||||||| || || |||||||||||
Sbjct: 731 tgcgagttcttcaaaacacttctcaacattatctcgtgttttcgcgctactctcaagaaa 672

                                                                       
Query: 401 cagacatccggattcttgtgcgaaagcaagaccttcttctcttgtgactgttctctcatc 460
            || ||||| ||||||| ||| || ||||| ||||||||||||||||| ||||| |||||
Sbjct: 671 taggcatccagattcttctgcaaaggcaagcccttcttctcttgtgacagttctttcatc 612

                                                                       
Query: 461 atccttatcaactttgtttccaacaagcatttttatgcagtctttgtttgatgagtttga 520
            ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 611 ctccttgtcaattttgtttccaacaagcatttttatgcagtctttgtttgatgagtgtga 552

                                                           
Query: 521 gtctatctccttagtccatacatcacccaaatttgtgaagctctctct 568
            ||||| |||||| ||||||| ||| ||| |||||||||||| |||||
Sbjct: 551 ctctatttccttactccatacttcagccagatttgtgaagctttctct 504
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>ref|XM_470212.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 633

 Score =  163 bits (82), Expect = 8e-37
 Identities = 252/308 (81%), Gaps = 3/308 (0%)
 Strand = Plus / Minus

                                                                       
Query: 261 tgctgctgtttcagaatgttcctcttgacaacggatgacgagccttcctccaggagactt 320
           |||| ||||||||||  |||||||||||||||   ||| || |||||||||| |||||||
Sbjct: 596 tgcttctgtttcagagagttcctcttgacaac---tgaagaaccttcctccaagagactt 540

                                                                       
Query: 321 ggaacttcaaggatctttagcacaagttcttcaaaacaattctcgacgttttctcgtgtt 380
           || || ||||| ||||||| | |||| |||||||| || ||||| || ||||||| ||||
Sbjct: 539 ggtacctcaagaatctttaacgcaagctcttcaaagcatttctccacattttctcttgtt 480

                                                                       
Query: 381 tttgcactgctctcaagaaacagacatccggattcttgtgcgaaagcaagaccttcttct 440
           || ||||||||||||||||| |||||||| ||||| || || || |||||||||||||| 
Sbjct: 479 ttggcactgctctcaagaaaaagacatccagattcctgggcaaaggcaagaccttcttcc 420

                                                                       
Query: 441 cttgtgactgttctctcatcatccttatcaactttgtttccaacaagcatttttatgcag 500
           ||||| ||  | || || |||| ||| || || ||||| || ||||||||||| ||||| 
Sbjct: 419 cttgtcaccatcctttcctcattcttgtccaccttgttcccgacaagcattttgatgcac 360

                                                                       
Query: 501 tctttgtttgatgagtttgagtctatctccttagtccatacatcacccaaatttgtgaag 560
           ||||| ||||  || |   | ||||| ||||| | |||||||||| ||||||||||||| 
Sbjct: 359 tctttatttgtcgaatgcaattctatttccttggcccatacatcagccaaatttgtgaaa 300

                   
Query: 561 ctctctct 568
           || |||||
Sbjct: 299 ctttctct 292
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>dbj|AK061250.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-F09, full
           insert sequence
          Length = 1083

 Score =  163 bits (82), Expect = 8e-37
 Identities = 252/308 (81%), Gaps = 3/308 (0%)
 Strand = Plus / Minus

                                                                       
Query: 261 tgctgctgtttcagaatgttcctcttgacaacggatgacgagccttcctccaggagactt 320
           |||| ||||||||||  |||||||||||||||   ||| || |||||||||| |||||||
Sbjct: 720 tgcttctgtttcagagagttcctcttgacaac---tgaagaaccttcctccaagagactt 664

                                                                       
Query: 321 ggaacttcaaggatctttagcacaagttcttcaaaacaattctcgacgttttctcgtgtt 380
           || || ||||| ||||||| | |||| |||||||| || ||||| || ||||||| ||||
Sbjct: 663 ggtacctcaagaatctttaacgcaagctcttcaaagcatttctccacattttctcttgtt 604

                                                                       
Query: 381 tttgcactgctctcaagaaacagacatccggattcttgtgcgaaagcaagaccttcttct 440
           || ||||||||||||||||| |||||||| ||||| || || || |||||||||||||| 
Sbjct: 603 ttggcactgctctcaagaaaaagacatccagattcctgggcaaaggcaagaccttcttcc 544

                                                                       
Query: 441 cttgtgactgttctctcatcatccttatcaactttgtttccaacaagcatttttatgcag 500
           ||||| ||  | || || |||| ||| || || ||||| || ||||||||||| ||||| 
Sbjct: 543 cttgtcaccatcctttcctcattcttgtccaccttgttcccgacaagcattttgatgcac 484

                                                                       
Query: 501 tctttgtttgatgagtttgagtctatctccttagtccatacatcacccaaatttgtgaag 560
           ||||| ||||  || |   | ||||| ||||| | |||||||||| ||||||||||||| 
Sbjct: 483 tctttatttgtcgaatgcaattctatttccttggcccatacatcagccaaatttgtgaaa 424

                   
Query: 561 ctctctct 568
           || |||||
Sbjct: 423 ctttctct 416
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>dbj|AK099130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023043D11, full
           insert sequence
          Length = 1002

 Score =  155 bits (78), Expect = 2e-34
 Identities = 251/308 (81%), Gaps = 3/308 (0%)
 Strand = Plus / Minus

                                                                       
Query: 261 tgctgctgtttcagaatgttcctcttgacaacggatgacgagccttcctccaggagactt 320
           |||| ||||||||||  |||||||||||||||   ||| || |||||||||| |||||||
Sbjct: 712 tgcttctgtttcagagagttcctcttgacaac---tgaagaaccttcctccaagagactt 656

                                                                       
Query: 321 ggaacttcaaggatctttagcacaagttcttcaaaacaattctcgacgttttctcgtgtt 380
           || || ||||| ||||||| | |||| |||||||| || ||||| || ||||||| ||||
Sbjct: 655 ggtacctcaagaatctttaacgcaagctcttcaaagcatttctccacattttctcttgtt 596

                                                                       
Query: 381 tttgcactgctctcaagaaacagacatccggattcttgtgcgaaagcaagaccttcttct 440
           || ||||||||||||||||| |||||||| ||| | || || || |||||||||||||| 
Sbjct: 595 ttggcactgctctcaagaaaaagacatccagatccctgggcaaaggcaagaccttcttcc 536

                                                                       
Query: 441 cttgtgactgttctctcatcatccttatcaactttgtttccaacaagcatttttatgcag 500
           ||||| ||  | || || |||| ||| || || ||||| || ||||||||||| ||||| 
Sbjct: 535 cttgtcaccatcctttcctcattcttgtccaccttgttcccgacaagcattttgatgcac 476

                                                                       
Query: 501 tctttgtttgatgagtttgagtctatctccttagtccatacatcacccaaatttgtgaag 560
           ||||| ||||  || |   | ||||| ||||| | |||||||||| ||||||||||||| 
Sbjct: 475 tctttatttgtcgaatgcaattctatttccttggcccatacatcagccaaatttgtgaaa 416

                   
Query: 561 ctctctct 568
           || |||||
Sbjct: 415 ctttctct 408
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>gb|AY108713.1| Zea mays PCO101165 mRNA sequence
          Length = 755

 Score =  135 bits (68), Expect = 2e-28
 Identities = 167/200 (83%)
 Strand = Plus / Minus

                                                                       
Query: 366 acgttttctcgtgtttttgcactgctctcaagaaacagacatccggattcttgtgcgaaa 425
           |||||||||| |||||| ||||| ||||| | ||| ||||||||   ||||||||| || 
Sbjct: 748 acgttttctcttgttttagcactactctcgacaaagagacatccacgttcttgtgcaaat 689

                                                                       
Query: 426 gcaagaccttcttctcttgtgactgttctctcatcatccttatcaactttgtttccaaca 485
           ||||||||||||||| |||| ||  |||| || |||||||| || ||||| |||||||||
Sbjct: 688 gcaagaccttcttcttttgtcaccattctgtcctcatccttgtccactttatttccaaca 629

                                                                       
Query: 486 agcatttttatgcagtctttgtttgatgagtttgagtctatctccttagtccatacatca 545
           |||||||| ||||| || || |||| ||||| | | ||||| ||||| ||||| ||||||
Sbjct: 628 agcattttgatgcattccttatttgttgagtgtaactctatttccttggtccacacatca 569

                               
Query: 546 cccaaatttgtgaagctctc 565
            ||||||||||||| |||||
Sbjct: 568 gccaaatttgtgaaactctc 549
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>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16,
             complete sequence
          Length = 179157

 Score =  131 bits (66), Expect = 3e-27
 Identities = 96/106 (90%)
 Strand = Plus / Plus

                                                                         
Query: 463   ccttatcaactttgtttccaacaagcatttttatgcagtctttgtttgatgagtttgagt 522
             |||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 59407 ccttgtcaattttgtttccaacaagcatttttatgcagtctttgtttgatgagtgtgact 59466

                                                           
Query: 523   ctatctccttagtccatacatcacccaaatttgtgaagctctctct 568
             |||| |||||| ||||||| ||| ||| |||||||||||| |||||
Sbjct: 59467 ctatttccttactccatacttcagccagatttgtgaagctttctct 59512



 Score =  105 bits (53), Expect = 2e-19
 Identities = 104/121 (85%)
 Strand = Plus / Plus

                                                                         
Query: 345   agttcttcaaaacaattctcgacgttttctcgtgtttttgcactgctctcaagaaacaga 404
             |||||||||||||| ||||| || || ||||||||||| || || ||||||||||| || 
Sbjct: 59096 agttcttcaaaacacttctcaacattatctcgtgttttcgcgctactctcaagaaatagg 59155

                                                                         
Query: 405   catccggattcttgtgcgaaagcaagaccttcttctcttgtgactgttctctcatcatcc 464
             ||||| ||||||| ||| || ||||| ||||||||||||||||| ||||| ||||| |||
Sbjct: 59156 catccagattcttctgcaaaggcaagcccttcttctcttgtgacagttctttcatcctcc 59215

              
Query: 465   t 465
             |
Sbjct: 59216 t 59216



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 81/92 (88%)
 Strand = Plus / Plus

                                                                         
Query: 221   ctattgacagcatctaccaccatactttgcatgactttcctgctgctgtttcagaatgtt 280
             ||||||||||||||  ||||||| |||||| |||||||| |||| ||| |||||||||||
Sbjct: 58535 ctattgacagcatccgccaccatgctttgcttgactttcttgcttctgcttcagaatgtt 58594

                                             
Query: 281   cctcttgacaacggatgacgagccttcctcca 312
             ||| |||||||| || || |||||||||||||
Sbjct: 58595 ccttttgacaaccgaagaggagccttcctcca 58626
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  131 bits (66), Expect = 3e-27
 Identities = 96/106 (90%)
 Strand = Plus / Plus

                                                                            
Query: 463      ccttatcaactttgtttccaacaagcatttttatgcagtctttgtttgatgagtttgagt 522
                |||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 16180518 ccttgtcaattttgtttccaacaagcatttttatgcagtctttgtttgatgagtgtgact 16180577

                                                              
Query: 523      ctatctccttagtccatacatcacccaaatttgtgaagctctctct 568
                |||| |||||| ||||||| ||| ||| |||||||||||| |||||
Sbjct: 16180578 ctatttccttactccatacttcagccagatttgtgaagctttctct 16180623



 Score =  105 bits (53), Expect = 2e-19
 Identities = 104/121 (85%)
 Strand = Plus / Plus

                                                                            
Query: 345      agttcttcaaaacaattctcgacgttttctcgtgtttttgcactgctctcaagaaacaga 404
                |||||||||||||| ||||| || || ||||||||||| || || ||||||||||| || 
Sbjct: 16180207 agttcttcaaaacacttctcaacattatctcgtgttttcgcgctactctcaagaaatagg 16180266

                                                                            
Query: 405      catccggattcttgtgcgaaagcaagaccttcttctcttgtgactgttctctcatcatcc 464
                ||||| ||||||| ||| || ||||| ||||||||||||||||| ||||| ||||| |||
Sbjct: 16180267 catccagattcttctgcaaaggcaagcccttcttctcttgtgacagttctttcatcctcc 16180326

                 
Query: 465      t 465
                |
Sbjct: 16180327 t 16180327



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 81/92 (88%)
 Strand = Plus / Plus

                                                                            
Query: 221      ctattgacagcatctaccaccatactttgcatgactttcctgctgctgtttcagaatgtt 280
                ||||||||||||||  ||||||| |||||| |||||||| |||| ||| |||||||||||
Sbjct: 16179646 ctattgacagcatccgccaccatgctttgcttgactttcttgcttctgcttcagaatgtt 16179705

                                                
Query: 281      cctcttgacaacggatgacgagccttcctcca 312
                ||| |||||||| || || |||||||||||||
Sbjct: 16179706 ccttttgacaaccgaagaggagccttcctcca 16179737
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  131 bits (66), Expect = 3e-27
 Identities = 96/106 (90%)
 Strand = Plus / Plus

                                                                            
Query: 463      ccttatcaactttgtttccaacaagcatttttatgcagtctttgtttgatgagtttgagt 522
                |||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 16188759 ccttgtcaattttgtttccaacaagcatttttatgcagtctttgtttgatgagtgtgact 16188818

                                                              
Query: 523      ctatctccttagtccatacatcacccaaatttgtgaagctctctct 568
                |||| |||||| ||||||| ||| ||| |||||||||||| |||||
Sbjct: 16188819 ctatttccttactccatacttcagccagatttgtgaagctttctct 16188864



 Score =  105 bits (53), Expect = 2e-19
 Identities = 104/121 (85%)
 Strand = Plus / Plus

                                                                            
Query: 345      agttcttcaaaacaattctcgacgttttctcgtgtttttgcactgctctcaagaaacaga 404
                |||||||||||||| ||||| || || ||||||||||| || || ||||||||||| || 
Sbjct: 16188448 agttcttcaaaacacttctcaacattatctcgtgttttcgcgctactctcaagaaatagg 16188507

                                                                            
Query: 405      catccggattcttgtgcgaaagcaagaccttcttctcttgtgactgttctctcatcatcc 464
                ||||| ||||||| ||| || ||||| ||||||||||||||||| ||||| ||||| |||
Sbjct: 16188508 catccagattcttctgcaaaggcaagcccttcttctcttgtgacagttctttcatcctcc 16188567

                 
Query: 465      t 465
                |
Sbjct: 16188568 t 16188568



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 81/92 (88%)
 Strand = Plus / Plus

                                                                            
Query: 221      ctattgacagcatctaccaccatactttgcatgactttcctgctgctgtttcagaatgtt 280
                ||||||||||||||  ||||||| |||||| |||||||| |||| ||| |||||||||||
Sbjct: 16187887 ctattgacagcatccgccaccatgctttgcttgactttcttgcttctgcttcagaatgtt 16187946

                                                
Query: 281      cctcttgacaacggatgacgagccttcctcca 312
                ||| |||||||| || || |||||||||||||
Sbjct: 16187947 ccttttgacaaccgaagaggagccttcctcca 16187978
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 89/103 (86%)
 Strand = Plus / Minus

                                                                           
Query: 343     caagttcttcaaaacaattctcgacgttttctcgtgtttttgcactgctctcaagaaaca 402
               |||| |||||||| || ||||| || ||||||| |||||| ||||||||||||||||| |
Sbjct: 2538511 caagctcttcaaagcatttctccacattttctcttgttttggcactgctctcaagaaaaa 2538452

                                                          
Query: 403     gacatccggattcttgtgcgaaagcaagaccttcttctcttgt 445
               ||||||| ||||| || || || |||||||||||||| |||||
Sbjct: 2538451 gacatccagattcctgggcaaaggcaagaccttcttcccttgt 2538409



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 64/76 (84%), Gaps = 3/76 (3%)
 Strand = Plus / Minus

                                                                           
Query: 261     tgctgctgtttcagaatgttcctcttgacaacggatgacgagccttcctccaggagactt 320
               |||| ||||||||||  |||||||||||||||   ||| || |||||||||| |||||||
Sbjct: 2540422 tgcttctgtttcagagagttcctcttgacaac---tgaagaaccttcctccaagagactt 2540366

                               
Query: 321     ggaacttcaaggatct 336
               || || ||||| ||||
Sbjct: 2540365 ggtacctcaagaatct 2540350



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                              
Query: 522     tctatctccttagtccatacatcacccaaatttgtgaagctctctct 568
               ||||| ||||| | |||||||||| ||||||||||||| || |||||
Sbjct: 2537932 tctatttccttggcccatacatcagccaaatttgtgaaactttctct 2537886
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>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0067N01, from chromosome 3, complete sequence
          Length = 159636

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 89/103 (86%)
 Strand = Plus / Plus

                                                                          
Query: 343    caagttcttcaaaacaattctcgacgttttctcgtgtttttgcactgctctcaagaaaca 402
              |||| |||||||| || ||||| || ||||||| |||||| ||||||||||||||||| |
Sbjct: 131583 caagctcttcaaagcatttctccacattttctcttgttttggcactgctctcaagaaaaa 131642

                                                         
Query: 403    gacatccggattcttgtgcgaaagcaagaccttcttctcttgt 445
              ||||||| ||||| || || || |||||||||||||| |||||
Sbjct: 131643 gacatccagattcctgggcaaaggcaagaccttcttcccttgt 131685



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 64/76 (84%), Gaps = 3/76 (3%)
 Strand = Plus / Plus

                                                                          
Query: 261    tgctgctgtttcagaatgttcctcttgacaacggatgacgagccttcctccaggagactt 320
              |||| ||||||||||  |||||||||||||||   ||| || |||||||||| |||||||
Sbjct: 129672 tgcttctgtttcagagagttcctcttgacaac---tgaagaaccttcctccaagagactt 129728

                              
Query: 321    ggaacttcaaggatct 336
              || || ||||| ||||
Sbjct: 129729 ggtacctcaagaatct 129744



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                             
Query: 522    tctatctccttagtccatacatcacccaaatttgtgaagctctctct 568
              ||||| ||||| | |||||||||| ||||||||||||| || |||||
Sbjct: 132162 tctatttccttggcccatacatcagccaaatttgtgaaactttctct 132208
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 89/103 (86%)
 Strand = Plus / Minus

                                                                           
Query: 343     caagttcttcaaaacaattctcgacgttttctcgtgtttttgcactgctctcaagaaaca 402
               |||| |||||||| || ||||| || ||||||| |||||| ||||||||||||||||| |
Sbjct: 2538621 caagctcttcaaagcatttctccacattttctcttgttttggcactgctctcaagaaaaa 2538562

                                                          
Query: 403     gacatccggattcttgtgcgaaagcaagaccttcttctcttgt 445
               ||||||| ||||| || || || |||||||||||||| |||||
Sbjct: 2538561 gacatccagattcctgggcaaaggcaagaccttcttcccttgt 2538519



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 64/76 (84%), Gaps = 3/76 (3%)
 Strand = Plus / Minus

                                                                           
Query: 261     tgctgctgtttcagaatgttcctcttgacaacggatgacgagccttcctccaggagactt 320
               |||| ||||||||||  |||||||||||||||   ||| || |||||||||| |||||||
Sbjct: 2540532 tgcttctgtttcagagagttcctcttgacaac---tgaagaaccttcctccaagagactt 2540476

                               
Query: 321     ggaacttcaaggatct 336
               || || ||||| ||||
Sbjct: 2540475 ggtacctcaagaatct 2540460



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                              
Query: 522     tctatctccttagtccatacatcacccaaatttgtgaagctctctct 568
               ||||| ||||| | |||||||||| ||||||||||||| || |||||
Sbjct: 2538042 tctatttccttggcccatacatcagccaaatttgtgaaactttctct 2537996
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>emb|AJ865107.1| Cocos nucifera microsatellite DNA, clone CnCir J2
          Length = 527

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 348 tcttcaaaacaattctcgacgttttctcgtgtttttgcactgctctcaagaaaca 402
           ||||||||||| ||||| || ||||| ||||||||||||||||  ||||||||||
Sbjct: 512 tcttcaaaacatttctccacattttcccgtgtttttgcactgcattcaagaaaca 458
to top
>gb|AC122164.6| Medicago truncatula clone mth2-24h4, complete sequence
          Length = 112428

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                       
Query: 463   ccttatcaactttgtttccaacaagcatttttatgcagtctt 504
             ||||||| |||||||||||||||||||| || ||||||||||
Sbjct: 45938 ccttatctactttgtttccaacaagcatcttcatgcagtctt 45897
to top
>emb|Z73936.1|LJRAB1Y L.japonicus mRNA for small GTP-binding protein, RAB1Y
          Length = 924

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                      
Query: 462 tccttatcaactttgtttccaacaagcatttttatgcagtctt 504
           ||||| || |||||||||||||||||||| || ||||||||||
Sbjct: 391 tccttgtctactttgtttccaacaagcatcttgatgcagtctt 349
to top
>emb|AJ719773.1| Gallus gallus mRNA for hypothetical protein, clone 6g4
          Length = 1767

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 462 tccttatcaactttgtttccaacaagcatttt 493
           ||||||||||  ||||||||||||||||||||
Sbjct: 443 tccttatcaatcttgtttccaacaagcatttt 412
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>ref|NM_001006355.1| Gallus gallus RAB18, member RAS oncogene family (RAB18), mRNA
          Length = 1767

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 462 tccttatcaactttgtttccaacaagcatttt 493
           ||||||||||  ||||||||||||||||||||
Sbjct: 443 tccttatcaatcttgtttccaacaagcatttt 412
to top
>ref|NM_066927.2| Caenorhabditis elegans RAB family member (rab-30) (rab-30) mRNA,
           complete cds
          Length = 666

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 463 ccttatcaactttgtttccaacaagcatttt 493
           ||||||| ||||||||||||||||| |||||
Sbjct: 388 ccttatcgactttgtttccaacaagaatttt 358
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>ref|NM_103516.2| Arabidopsis thaliana ATRAB18; GTP binding AT1G43890 (ATRAB18) mRNA,
           complete cds
          Length = 990

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                       
Query: 333 atctttagcacaagttcttcaaaacaattctcgacgttttctcgtgtttttgcactgctc 392
           ||||| || ||||| ||||||||||| | ||| |||||  |||| || |||||||| | |
Sbjct: 631 atcttaagaacaagctcttcaaaacattgctcaacgttgactcgagtctttgcactacac 572

                             
Query: 393 tcaagaaacagacatccg 410
           || ||||||| |||||||
Sbjct: 571 tccagaaacaaacatccg 554
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>ref|XM_868299.1| PREDICTED: Bos taurus similar to RAB18, member RAS oncogene family
           (predicted) (LOC616304), mRNA
          Length = 2385

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 462 tccttatcaactttgtttccaacaagcattttta 495
           |||||||||| |||||||||||| ||||| ||||
Sbjct: 405 tccttatcaattttgtttccaactagcatgttta 372
to top
>gb|AC073109.2| Homo sapiens BAC clone RP11-502P9 from 7, complete sequence
          Length = 158340

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 492   tttatgcagtctttgtttgatg 513
             ||||||||||||||||||||||
Sbjct: 20324 tttatgcagtctttgtttgatg 20345
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>gb|AY063080.1| Arabidopsis thaliana putative GTP-binding protein RAB1Y (At1g43890)
           mRNA, complete cds
          Length = 670

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                       
Query: 333 atctttagcacaagttcttcaaaacaattctcgacgttttctcgtgtttttgcactgctc 392
           ||||| || ||||| ||||||||||| | ||| |||||  |||| || |||||||| | |
Sbjct: 524 atcttaagaacaagctcttcaaaacattgctcaacgttgactcgagtctttgcactacac 465

                             
Query: 393 tcaagaaacagacatccg 410
           || ||||||| |||||||
Sbjct: 464 tccagaaacaaacatccg 447
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>gb|AF370263.1| Arabidopsis thaliana putative GTP-binding protein RAB1Y (At1g43890)
           mRNA, complete cds
          Length = 864

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                       
Query: 333 atctttagcacaagttcttcaaaacaattctcgacgttttctcgtgtttttgcactgctc 392
           ||||| || ||||| ||||||||||| | ||| |||||  |||| || |||||||| | |
Sbjct: 595 atcttaagaacaagctcttcaaaacattgctcaacgttgactcgagtctttgcactacac 536

                             
Query: 393 tcaagaaacagacatccg 410
           || ||||||| |||||||
Sbjct: 535 tccagaaacaaacatccg 518
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>gb|AY086878.1| Arabidopsis thaliana clone 2898 mRNA, complete sequence
          Length = 884

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                       
Query: 333 atctttagcacaagttcttcaaaacaattctcgacgttttctcgtgtttttgcactgctc 392
           ||||| || ||||| ||||||||||| | ||| |||||  |||| || |||||||| | |
Sbjct: 634 atcttaagaacaagctcttcaaaacattgctcaacgttgactcgagtctttgcactacac 575

                             
Query: 393 tcaagaaacagacatccg 410
           || ||||||| |||||||
Sbjct: 574 tccagaaacaaacatccg 557
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>gb|U75603.1|ATU75603 Arabidopsis thaliana AtRab18 (AtRAB18) mRNA, complete cds
          Length = 700

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                       
Query: 333 atctttagcacaagttcttcaaaacaattctcgacgttttctcgtgtttttgcactgctc 392
           ||||| || ||||| ||||||||||| | ||| |||||  |||| || |||||||| | |
Sbjct: 543 atcttaagaacaagctcttcaaaacattgctcaacgttgactcgagtctttgcactacac 484

                             
Query: 393 tcaagaaacagacatccg 410
           || ||||||| |||||||
Sbjct: 483 tccagaaacaaacatccg 466
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>emb|AL672200.10| Mouse DNA sequence from clone RP23-37G19 on chromosome 3, complete
             sequence
          Length = 89129

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 108   tttagacacagctcatgtacaa 129
             ||||||||||||||||||||||
Sbjct: 80241 tttagacacagctcatgtacaa 80220
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>ref|NM_111826.3| Arabidopsis thaliana GTP binding AT3G09910 mRNA, complete cds
          Length = 1076

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 466 tatcaactttgtttccaacaagcatttttatgcagtc 502
           ||||||||||||| ||||| ||||| || ||||||||
Sbjct: 699 tatcaactttgttgccaacgagcatcttaatgcagtc 663
to top
>gb|AC154039.17| Mus musculus 10 BAC RP23-282M20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 210923

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 411    gattcttgtgcgaaagcaaga 431
              |||||||||||||||||||||
Sbjct: 142630 gattcttgtgcgaaagcaaga 142610
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>gb|AC068066.3| Mus musculus strain C57BL6/J chromosome 6 clone RP23-414I9, complete
             sequence
          Length = 184879

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 295   atgacgagccttcctccagga 315
             |||||||||||||||||||||
Sbjct: 30281 atgacgagccttcctccagga 30301
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>gb|BT012396.1| Arabidopsis thaliana At3g09910 mRNA, complete cds
          Length = 618

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 466 tatcaactttgtttccaacaagcatttttatgcagtc 502
           ||||||||||||| ||||| ||||| || ||||||||
Sbjct: 391 tatcaactttgttgccaacgagcatcttaatgcagtc 355
to top
>gb|BT012209.1| Arabidopsis thaliana At3g09910 gene, complete cds
          Length = 759

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 466 tatcaactttgtttccaacaagcatttttatgcagtc 502
           ||||||||||||| ||||| ||||| || ||||||||
Sbjct: 490 tatcaactttgttgccaacgagcatcttaatgcagtc 454
to top
>gb|AC015985.10|ATAC015985 Arabidopsis thaliana chromosome III BAC F8A24 genomic sequence,
             complete sequence
          Length = 72902

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 466   tatcaactttgtttccaacaagcatttttatgcagtc 502
             ||||||||||||| ||||| ||||| || ||||||||
Sbjct: 29469 tatcaactttgttgccaacgagcatcttaatgcagtc 29433
to top
>emb|Y11479.1|SM11479 S.mansoni mRNA for Ras protein, partial
          Length = 1391

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 467 atcaactttgtttccaacaag 487
           |||||||||||||||||||||
Sbjct: 256 atcaactttgtttccaacaag 236
to top
>gb|U53177.1|SMU53177 Schistosoma mansoni ras protein homolog Psmras1 (Smras1) mRNA,
           complete cds
          Length = 1592

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 467 atcaactttgtttccaacaag 487
           |||||||||||||||||||||
Sbjct: 371 atcaactttgtttccaacaag 351
to top
>emb|BX824504.1|CNS0A7BF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH53ZA07 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1050

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 466 tatcaactttgtttccaacaagcatttttatgcagtc 502
           ||||||||||||| ||||| ||||| || ||||||||
Sbjct: 699 tatcaactttgttgccaacgagcatcttaatgcagtc 663
to top
>gb|AC007009.2|AC007009 Homo sapiens BAC clone RP11-560C1 from 7p22-p21, complete sequence
          Length = 152523

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 447   actgttctctcatcatcctta 467
             |||||||||||||||||||||
Sbjct: 36645 actgttctctcatcatcctta 36665
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>gb|AC022314.5|AC022314 Genomic sequence for Arabidopsis thaliana BAC F9C16 from chromosome
            I, complete sequence
          Length = 122543

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 57/69 (82%)
 Strand = Plus / Minus

                                                                        
Query: 342  acaagttcttcaaaacaattctcgacgttttctcgtgtttttgcactgctctcaagaaac 401
            ||||| ||||||||||| | ||| |||||  |||| || |||||||| | ||| ||||||
Sbjct: 8330 acaagctcttcaaaacattgctcaacgttgactcgagtctttgcactacactccagaaac 8271

                     
Query: 402  agacatccg 410
            | |||||||
Sbjct: 8270 aaacatccg 8262
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>gb|AC006423.7|AC006423 Arabidopsis thaliana chromosome I BAC F28H19 genomic sequence, complete
              sequence
          Length = 131692

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 57/69 (82%)
 Strand = Plus / Minus

                                                                          
Query: 342    acaagttcttcaaaacaattctcgacgttttctcgtgtttttgcactgctctcaagaaac 401
              ||||| ||||||||||| | ||| |||||  |||| || |||||||| | ||| ||||||
Sbjct: 124566 acaagctcttcaaaacattgctcaacgttgactcgagtctttgcactacactccagaaac 124507

                       
Query: 402    agacatccg 410
              | |||||||
Sbjct: 124506 aaacatccg 124498
to top
>dbj|AK111647.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132F23, full
           insert sequence
          Length = 1059

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 462 tccttatcaactttgtttccaacaagcat 490
           ||||| |||||||||||||| ||||||||
Sbjct: 561 tccttgtcaactttgtttccgacaagcat 533
to top
>dbj|AK104720.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-A11, full
           insert sequence
          Length = 1059

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 462 tccttatcaactttgtttccaacaagcat 490
           ||||| |||||||||||||| ||||||||
Sbjct: 561 tccttgtcaactttgtttccgacaagcat 533
to top
>gb|AC160060.20| Mus musculus 10 BAC RP23-360L4 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 229681

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 411   gattcttgtgcgaaagcaaga 431
             |||||||||||||||||||||
Sbjct: 42290 gattcttgtgcgaaagcaaga 42270
to top
>gb|AC125027.12| Mus musculus chromosome 8, clone RP24-68F20, complete sequence
          Length = 194850

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    tttgggtatctagaacttgc 172
              ||||||||||||||||||||
Sbjct: 176294 tttgggtatctagaacttgc 176275
to top
>ref|NM_193081.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 405

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 247 ttgcatgactttcctgctgc 266
           ||||||||||||||||||||
Sbjct: 379 ttgcatgactttcctgctgc 398
to top
>gb|AC116850.10| Mus musculus chromosome 8, clone RP24-396C10, complete sequence
          Length = 147264

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 153   tttgggtatctagaacttgc 172
             ||||||||||||||||||||
Sbjct: 17888 tttgggtatctagaacttgc 17869
to top
>gb|AC183103.2| Pan troglodytes BAC clone CH251-712L4 from chromosome 3, complete
              sequence
          Length = 191366

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     tttgtacaaaccaattttaa 35
              ||||||||||||||||||||
Sbjct: 163172 tttgtacaaaccaattttaa 163153
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>ref|XM_534223.2| PREDICTED: Canis familiaris similar to Myeloid differentiation
           primary response protein MyD88 (LOC477024), mRNA
          Length = 1155

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 258 tcctgctgctgtttcagaat 277
           ||||||||||||||||||||
Sbjct: 402 tcctgctgctgtttcagaat 383
to top
>emb|CR533579.6| Zebrafish DNA sequence from clone CH211-232J20 in linkage group 25,
             complete sequence
          Length = 199156

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   ttagcacaagttcttcaaaa 356
             ||||||||||||||||||||
Sbjct: 86186 ttagcacaagttcttcaaaa 86167
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>emb|CR354389.15| Zebrafish DNA sequence from clone CH211-220J14 in linkage group 8,
             complete sequence
          Length = 123378

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 475   tgtttccaacaagcatttttatgc 498
             |||||||| |||||||||||||||
Sbjct: 15492 tgtttccatcaagcatttttatgc 15469
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>ref|XM_783197.1| PREDICTED: Strongylocentrotus purpuratus similar to X-ray repair
           complementing defective repair in Chinese hamster cells
           1 (LOC583279), mRNA
          Length = 972

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 438 tctcttgtgactgttctctc 457
           ||||||||||||||||||||
Sbjct: 285 tctcttgtgactgttctctc 266
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>gb|AC091503.2| Rattus norvegicus strain Brown Norway clone RP31-446A15, complete
              sequence
          Length = 178963

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     ccaccttttctactcacaga 104
              ||||||||||||||||||||
Sbjct: 124978 ccaccttttctactcacaga 124997
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>emb|AL009173.2|HS32F7 Human DNA sequence from clone RP1-32F7 on chromosome Xq21.2-21.33
             Contains the NAP1L3 gene for nucleosome assembly protein
             1-like 3, the FLJ37659 gene and a CpG island, complete
             sequence
          Length = 101167

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 377   tgtttttgcactgctctcaagaaa 400
             ||||||||||||||||| ||||||
Sbjct: 11973 tgtttttgcactgctctaaagaaa 11950
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>ref|XM_780582.1| PREDICTED: Strongylocentrotus purpuratus similar to DNA-repair
           protein XRCC1 (LOC580530), mRNA
          Length = 1608

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 438 tctcttgtgactgttctctc 457
           ||||||||||||||||||||
Sbjct: 624 tctcttgtgactgttctctc 605
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>gb|AC016255.24| Homo sapiens 3 BAC RP11-883M5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 84112

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   tttgcatgactttcctgctg 265
             ||||||||||||||||||||
Sbjct: 10626 tttgcatgactttcctgctg 10607
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>gb|AC026469.8| Homo sapiens chromosome 16 clone RP11-442O1, complete sequence
          Length = 199669

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 245    ctttgcatgactttcctgctgctg 268
              ||||||||| ||||||||||||||
Sbjct: 128508 ctttgcatgtctttcctgctgctg 128531
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 247      ttgcatgactttcctgctgc 266
                ||||||||||||||||||||
Sbjct: 26099981 ttgcatgactttcctgctgc 26100000
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>gb|AC092341.5| Homo sapiens chromosome 16 clone RP11-260K13, complete sequence
          Length = 180623

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 245  ctttgcatgactttcctgctgctg 268
            ||||||||| ||||||||||||||
Sbjct: 2186 ctttgcatgtctttcctgctgctg 2209
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>gb|AC079402.5| Homo sapiens BAC clone RP11-597E15 from 2, complete sequence
          Length = 86973

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 377 tgtttttgcactgctctcaagaaa 400
           ||||||||||||||||| ||||||
Sbjct: 493 tgtttttgcactgctctaaagaaa 470
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>gb|AC093784.3| Homo sapiens BAC clone RP11-211K17 from 2, complete sequence
          Length = 165500

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 377    tgtttttgcactgctctcaagaaa 400
              ||||||||||||||||| ||||||
Sbjct: 163993 tgtttttgcactgctctaaagaaa 163970
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>gb|AC092575.3| Homo sapiens BAC clone RP11-4C18 from 2, complete sequence
          Length = 120927

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    gtacaaaccaattttaacca 38
             ||||||||||||||||||||
Sbjct: 20414 gtacaaaccaattttaacca 20433
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>dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0011H09
          Length = 147992

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    ttgcatgactttcctgctgc 266
              ||||||||||||||||||||
Sbjct: 133543 ttgcatgactttcctgctgc 133562
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>emb|BX004984.6| Zebrafish DNA sequence from clone DKEY-3N4, complete sequence
          Length = 264738

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    ttagcacaagttcttcaaaa 356
              ||||||||||||||||||||
Sbjct: 207702 ttagcacaagttcttcaaaa 207683
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>dbj|AP002026.2| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:429K21, complete
             sequence
          Length = 195389

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    ccaaaaccttacaaactact 63
             ||||||||||||||||||||
Sbjct: 94292 ccaaaaccttacaaactact 94273
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>emb|AL844179.12| Zebrafish DNA sequence from clone DKEY-218M22, complete sequence
          Length = 182105

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 475   tgtttccaacaagcatttttatgc 498
             |||||||| |||||||||||||||
Sbjct: 73868 tgtttccatcaagcatttttatgc 73845
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>emb|AL953891.10| Zebrafish DNA sequence from clone DKEY-28P22, complete sequence
          Length = 242282

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    ttagcacaagttcttcaaaa 356
              ||||||||||||||||||||
Sbjct: 129747 ttagcacaagttcttcaaaa 129728
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>emb|AL935175.6| Mouse DNA sequence from clone RP23-397E13 on chromosome 2, complete
              sequence
          Length = 158592

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 242    atactttgcatgactttcct 261
              ||||||||||||||||||||
Sbjct: 135910 atactttgcatgactttcct 135929


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,561,143
Number of Sequences: 3902068
Number of extensions: 5561143
Number of successful extensions: 98917
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98614
Number of HSP's gapped (non-prelim): 295
length of query: 568
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 545
effective length of database: 17,143,297,704
effective search space: 9343097248680
effective search space used: 9343097248680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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