ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20p14 |
|---|---|
| Clone Library Name | barley_pub |
>YFGC_SALTY (P66950) Hypothetical protein yfgC precursor| Length = 487 Score = 35.4 bits (80), Expect = 0.17 Identities = 16/37 (43%), Positives = 23/37 (62%) Frame = -3 Query: 382 RTEIEADHMGMLLMAAAGFDPHAAPKAVEKLIGNDIY 272 + E EAD +G+ ++ AGFDP A P +EKL+ Y Sbjct: 199 QNEQEADRIGIQVLQRAGFDPQAMPSFLEKLLDQARY 235
>YFGC_SALTI (P66951) Hypothetical protein yfgC precursor| Length = 487 Score = 35.4 bits (80), Expect = 0.17 Identities = 16/37 (43%), Positives = 23/37 (62%) Frame = -3 Query: 382 RTEIEADHMGMLLMAAAGFDPHAAPKAVEKLIGNDIY 272 + E EAD +G+ ++ AGFDP A P +EKL+ Y Sbjct: 199 QNEQEADRIGIQVLQRAGFDPQAMPSFLEKLLDQARY 235
>YFGC_SHIFL (P66949) Hypothetical protein yfgC precursor| Length = 487 Score = 33.9 bits (76), Expect = 0.48 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = -3 Query: 382 RTEIEADHMGMLLMAAAGFDPHAAPKAVEKLIGNDIY 272 + E EAD +G+ ++ +GFDP A P +EKL+ Y Sbjct: 199 QNEQEADRIGIQVLQRSGFDPQAMPTFLEKLLDQARY 235
>YFGC_ECOLI (P66948) Hypothetical protein yfgC precursor| Length = 487 Score = 33.9 bits (76), Expect = 0.48 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = -3 Query: 382 RTEIEADHMGMLLMAAAGFDPHAAPKAVEKLIGNDIY 272 + E EAD +G+ ++ +GFDP A P +EKL+ Y Sbjct: 199 QNEQEADRIGIQVLQRSGFDPQAMPTFLEKLLDQARY 235
>YFGC_ECO57 (Q8XAD2) Hypothetical protein yfgC precursor| Length = 487 Score = 33.9 bits (76), Expect = 0.48 Identities = 15/37 (40%), Positives = 23/37 (62%) Frame = -3 Query: 382 RTEIEADHMGMLLMAAAGFDPHAAPKAVEKLIGNDIY 272 + E EAD +G+ ++ +GFDP A P +EKL+ Y Sbjct: 199 QNEQEADRIGIQVLQRSGFDPQAMPTFLEKLLDQARY 235
>Y3069_YERPE (Q8ZCC3) Hypothetical protein YPO3069/y1412/YP2691 precursor| Length = 486 Score = 32.3 bits (72), Expect = 1.4 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = -3 Query: 376 EIEADHMGMLLMAAAGFDPHAAPKAVEKLIGNDIY 272 E EAD +G+ ++ +GFDP A P ++KL Y Sbjct: 199 EQEADRIGIQVLQRSGFDPQAMPNFLQKLADQSRY 233
>Y2164_VIBCH (Q9KQ40) Hypothetical protein VC2164 precursor| Length = 484 Score = 31.6 bits (70), Expect = 2.4 Identities = 19/52 (36%), Positives = 26/52 (50%) Frame = -3 Query: 391 YLCRTEIEADHMGMLLMAAAGFDPHAAPKAVEKLIGNDIYHLSGKKRAQLLS 236 Y E EAD G+ +A AGFD +A P+ +L D Y + K LL+ Sbjct: 193 YTRSNEKEADRFGIATLAKAGFDANAMPQFFTRLA--DEYRYASKPPPMLLT 242
>GCY_ARBPU (P11528) Resact receptor precursor (Guanylate cyclase) (EC 4.6.1.2)| Length = 986 Score = 31.6 bits (70), Expect = 2.4 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = -3 Query: 229 KIMDEALELYKEAIPSKAPGLQHLKKSSPMCVLCRFRLCHMTESMDRP 86 ++ D + K +P P L + +++P CVL R C + + M+RP Sbjct: 780 ELADIIARVSKGEVPPYRPVLNAVNEAAPDCVLTAIRACWVEDPMERP 827
>QUEA_BACHK (Q6HDA8) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 350 Score = 29.6 bits (65), Expect = 9.1 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 4/69 (5%) Frame = -3 Query: 373 IEADHMGMLLMAAAGFDPHAAP----KAVEKLIGNDIYHLSGKKRAQLLSRAKIMDEALE 206 I DH G L A+ D P KA++ LI N +HL L+S D L Sbjct: 263 IATDHDGKLCAASGWTDIFMYPGYEFKAIDGLITN--FHLPKSTLIMLVSAFANRDNVLH 320 Query: 205 LYKEAIPSK 179 Y EA+ K Sbjct: 321 AYNEAVKEK 329
>QUEA_BACCZ (Q634C6) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 350 Score = 29.6 bits (65), Expect = 9.1 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 4/69 (5%) Frame = -3 Query: 373 IEADHMGMLLMAAAGFDPHAAP----KAVEKLIGNDIYHLSGKKRAQLLSRAKIMDEALE 206 I DH G L A+ D P KA++ LI N +HL L+S D L Sbjct: 263 IATDHDGKLCAASGWTDIFMYPGYEFKAIDGLITN--FHLPKSTLIMLVSAFANRDNVLH 320 Query: 205 LYKEAIPSK 179 Y EA+ K Sbjct: 321 AYNEAVKEK 329
>QUEA_BACCR (Q817W5) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 350 Score = 29.6 bits (65), Expect = 9.1 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 4/69 (5%) Frame = -3 Query: 373 IEADHMGMLLMAAAGFDPHAAP----KAVEKLIGNDIYHLSGKKRAQLLSRAKIMDEALE 206 I DH G L A+ D P KA++ LI N +HL L+S D L Sbjct: 263 IATDHDGKLCAASGWTDIFMYPGYEFKAIDGLITN--FHLPKSTLIMLVSAFANRDNVLH 320 Query: 205 LYKEAIPSK 179 Y EA+ K Sbjct: 321 AYNEAVKEK 329
>QUEA_BACC1 (Q730B3) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 350 Score = 29.6 bits (65), Expect = 9.1 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 4/69 (5%) Frame = -3 Query: 373 IEADHMGMLLMAAAGFDPHAAP----KAVEKLIGNDIYHLSGKKRAQLLSRAKIMDEALE 206 I DH G L A+ D P KA++ LI N +HL L+S D L Sbjct: 263 IATDHDGKLCAASGWTDIFMYPGYEFKAIDGLITN--FHLPKSTLIMLVSAFANRDNVLH 320 Query: 205 LYKEAIPSK 179 Y EA+ K Sbjct: 321 AYNEAVKEK 329
>QUEA_BACAN (Q81LH1) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 350 Score = 29.6 bits (65), Expect = 9.1 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 4/69 (5%) Frame = -3 Query: 373 IEADHMGMLLMAAAGFDPHAAP----KAVEKLIGNDIYHLSGKKRAQLLSRAKIMDEALE 206 I DH G L A+ D P KA++ LI N +HL L+S D L Sbjct: 263 IATDHDGKLCAASGWTDIFMYPGYEFKAIDGLITN--FHLPKSTLIMLVSAFANRDNVLH 320 Query: 205 LYKEAIPSK 179 Y EA+ K Sbjct: 321 AYNEAVKEK 329 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,198,869 Number of Sequences: 219361 Number of extensions: 1875491 Number of successful extensions: 3401 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3311 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3400 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6882837918 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
