ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20p11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precur... 222 3e-55
2emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical pr... 222 3e-55
3gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisp... 214 8e-53
4emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precur... 198 5e-48
5emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosp... 188 4e-45
6gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate c... 159 4e-36
7gb|AC138382.10| Mus musculus chromosome 1, clone RP24-400E14, co... 44 0.16
8dbj|AB042067.1| Triticum aestivum rbcS gene for ribulose-1,5-bis... 44 0.16
9dbj|AB042066.1| Triticum aestivum rbcS gene for ribulose-1,5-bis... 44 0.16
10dbj|AB042064.1| Triticum aestivum rbcS gene for ribulose-1,5-bis... 44 0.16
11gb|AC138395.8| Mus musculus chromosome 3, clone RP24-128I24, com... 40 2.6
12gb|AC129013.3| Mus musculus BAC clone RP24-550P17 from chromosom... 40 2.6
13gb|AC109169.13| Mus musculus chromosome 6, clone RP23-5D6, compl... 40 2.6
14gb|AC160032.7| Mus musculus 6 BAC RP24-179I4 (Roswell Park Cance... 40 2.6
15gb|AC159968.3| Mus musculus chromosome 3, clone RP23-256J12, com... 40 2.6
16gb|AC107624.1| Homo sapiens chromosome 3 clone RP11-744H21, comp... 40 2.6
17gb|AC099779.2| Homo sapiens chromosome 3 clone RP11-760G13, comp... 40 2.6
18dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
19dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
20emb|AL096869.8|CNS00YVH Human chromosome 14 DNA sequence BAC R-1... 40 2.6
21emb|BX323846.2| Pig DNA sequence from clone XX-43B6, complete se... 40 2.6
22emb|AL139193.4|CNS01DXA Human chromosome 14 DNA sequence BAC R-6... 40 2.6
23gb|M37328.1|WHTRUBIAA T.aestivum ribulose-1,5-bisphosphate carbo... 40 2.6 
>emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39 ribulosebisphosphate carboxylase) clones 234
           and 406
          Length = 743

 Score =  222 bits (112), Expect = 3e-55
 Identities = 182/204 (89%), Gaps = 3/204 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacgagcatgctttntcgagccgtgtgtggtncatgaacatgggcactacacacatttt 60
           ||||||||||||||| ||||||| ||| |||| ||||||||||| || |||||| ||| |
Sbjct: 656 atacgagcatgctttctcgagccatgt-tggtacatgaacatggaca-tacacatattct 599

                                                                       
Query: 61  taggaacaaataagaaagatgn-tggagaaggaaaacccaaagcaatgtnagagttgaca 119
           ||||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||
Sbjct: 598 taggaacaaataagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgaca 539

                                                                       
Query: 120 aaactgnaatggcactttatatgtggcccatcgtcagtgagctgtttatgccttgccgga 179
           |||||| ||||||||||||||| |||||  |||| ||||||||||||| |||||||||||
Sbjct: 538 aaactgcaatggcactttatatatggcctgtcgtgagtgagctgtttaggccttgccgga 479

                                   
Query: 180 ctcctcgnannctggtggcttgaa 203
           ||||||| |  | |||||||||||
Sbjct: 478 ctcctcgcagcccggtggcttgaa 455
to top
>emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical protein, clone 9
          Length = 875

 Score =  222 bits (112), Expect = 3e-55
 Identities = 182/204 (89%), Gaps = 3/204 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacgagcatgctttntcgagccgtgtgtggtncatgaacatgggcactacacacatttt 60
           ||||||||||||||| ||||||| ||| |||| ||||||||||| || |||||| ||| |
Sbjct: 777 atacgagcatgctttctcgagccatgt-tggtacatgaacatggaca-tacacatattct 720

                                                                       
Query: 61  taggaacaaataagaaagatgn-tggagaaggaaaacccaaagcaatgtnagagttgaca 119
           ||||||||||||||||||||   |||| ||||||||||||||||||||| ||||||||||
Sbjct: 719 taggaacaaataagaaagataaatggacaaggaaaacccaaagcaatgtcagagttgaca 660

                                                                       
Query: 120 aaactgnaatggcactttatatgtggcccatcgtcagtgagctgtttatgccttgccgga 179
           |||||| |||||||||||||||| ||||| | || |||||||||||||||||||||||||
Sbjct: 659 aaactgcaatggcactttatatgcggcccgtggtgagtgagctgtttatgccttgccgga 600

                                   
Query: 180 ctcctcgnannctggtggcttgaa 203
           ||||||| |  | |||||||||||
Sbjct: 599 ctcctcgcagcccggtggcttgaa 576
to top
>gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisphosphate carboxylase
           small subunit mRNA, clone pTS406, 3' end
          Length = 317

 Score =  214 bits (108), Expect = 8e-53
 Identities = 181/204 (88%), Gaps = 3/204 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacgagcatgctttntcgagccgtgtgtggtncatgaacatgggcactacacacatttt 60
           ||||||||||||||| ||||||| ||| | || ||||||||||| || |||||| ||| |
Sbjct: 230 atacgagcatgctttctcgagccatgt-tcgtacatgaacatggaca-tacacatattct 173

                                                                       
Query: 61  taggaacaaataagaaagatgn-tggagaaggaaaacccaaagcaatgtnagagttgaca 119
           ||||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||
Sbjct: 172 taggaacaaataagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgaca 113

                                                                       
Query: 120 aaactgnaatggcactttatatgtggcccatcgtcagtgagctgtttatgccttgccgga 179
           |||||| ||||||||||||||| |||||  |||| ||||||||||||| |||||||||||
Sbjct: 112 aaactgcaatggcactttatatatggcctgtcgtgagtgagctgtttaggccttgccgga 53

                                   
Query: 180 ctcctcgnannctggtggcttgaa 203
           ||||||| |  | |||||||||||
Sbjct: 52  ctcctcgcagcccggtggcttgaa 29
to top
>emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39) (ribulosebisphosphate carboxylase, clone 512)
          Length = 611

 Score =  198 bits (100), Expect = 5e-48
 Identities = 179/204 (87%), Gaps = 3/204 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacgagcatgctttntcgagccgtgtgtggtncatgaacatgggcactacacacatttt 60
           ||||||||| ||||| ||||||| ||| || | ||||||||||| || |||||| ||| |
Sbjct: 505 atacgagcacgctttctcgagccatgt-tgttacatgaacatggaca-tacacatattct 448

                                                                       
Query: 61  taggaacaaataagaaagatgn-tggagaaggaaaacccaaagcaatgtnagagttgaca 119
           ||||||||| |||||||||    |||||||||||||||||||||||||| ||||||||||
Sbjct: 447 taggaacaagtaagaaagacaaatggagaaggaaaacccaaagcaatgtcagagttgaca 388

                                                                       
Query: 120 aaactgnaatggcactttatatgtggcccatcgtcagtgagctgtttatgccttgccgga 179
           |||||| |||||||||||||||||||||| | || ||||||||||||| |||||||||||
Sbjct: 387 aaactgcaatggcactttatatgtggcccgtggtgagtgagctgtttaggccttgccgga 328

                                   
Query: 180 ctcctcgnannctggtggcttgaa 203
           ||||||| |  | |||||||||||
Sbjct: 327 ctcctcgcagcccggtggcttgaa 304
to top
>emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase, small subunit
          Length = 837

 Score =  188 bits (95), Expect = 4e-45
 Identities = 179/203 (88%), Gaps = 5/203 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacgagcatgctttntcgagccgtgtgtggtncatgaacatgggcactacacacatttt 60
           ||||||||||||||| ||||||| ||| |||| ||||||||||| || |||||| ||| |
Sbjct: 737 atacgagcatgctttctcgagccatgt-tggtacatgaacatggaca-tacacatattct 680

                                                                       
Query: 61  taggaacaaataagaaagatgn-tggagaaggaaaacccaaagcaatgtnagagttgaca 119
           ||||||||||||||||||||   |||||||||||||||||||||||||| ||||||||||
Sbjct: 679 taggaacaaataagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgaca 620

                                                                       
Query: 120 aaactgnaatggcac-tttatatgtggcccatcgtcagtgagctgtttatgccttgccgg 178
           |||||| |||||||| |||||||  ||||  |||| ||||||||||||| ||||||||||
Sbjct: 619 aaactgcaatggcacttttatat-aggcctgtcgtgagtgagctgtttaggccttgccgg 561

                                  
Query: 179 actcctcgnannctggtggcttg 201
           |||||||| |  | |||||||||
Sbjct: 560 actcctcgcagcccggtggcttg 538
to top
>gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate carboxylase small subunit
           mRNA, complete cds
          Length = 816

 Score =  159 bits (80), Expect = 4e-36
 Identities = 180/203 (88%), Gaps = 11/203 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   atacgagcatgctttntcgagccgtgtgtggtncatgaacatgggcactacacacatttt 60
           ||||||||||||||| ||||||  ||| |||| |||||||||||| ||||||||||||||
Sbjct: 701 atacgagcatgctttctcgagca-tgt-tggtacatgaacatggg-actacacacatttt 645

                                                                       
Query: 61  taggaacaaataagaaagatgntggagaaggaaaacccaaagcaatgtnagagttgacaa 120
            |||||||| ||||||||||  |||||||||||||||  ||||| ||| |||||||||||
Sbjct: 644 -aggaacaa-taagaaagataatggagaaggaaaacc--aagca-tgtcagagttgacaa 590

                                                                       
Query: 121 aactgnaatggcactttatatgtggcccatcgtcagtgagctgtttatgccttgccggac 180
           | ||| |||||||||| ||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 589 a-ctgcaatggcactt-atatgtg-cccatcgtcagtgagctgtttatgccttgcccgac 533

                                  
Query: 181 tcctcgnannctggtggcttgaa 203
           |||| | |  |||||||||||||
Sbjct: 532 tcctggcagcctggtggcttgaa 510
to top
>gb|AC138382.10| Mus musculus chromosome 1, clone RP24-400E14, complete sequence
          Length = 136819

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 56    atttttaggaacaaataagaaa 77
             ||||||||||||||||||||||
Sbjct: 69692 atttttaggaacaaataagaaa 69671
to top
>dbj|AB042067.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, complete cds,
           clone:p10-1
          Length = 629

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                              
Query: 169 gccttgccggactcctcgnannctggtggcttgaa 203
           |||||||||||||||||| |  |||||||| ||||
Sbjct: 625 gccttgccggactcctcgcaacctggtggcctgaa 591
to top
>dbj|AB042066.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, complete cds,
           clone:p9-1
          Length = 739

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                              
Query: 169 gccttgccggactcctcgnannctggtggcttgaa 203
           |||||||||||||||||| |  | |||||||||||
Sbjct: 735 gccttgccggactcctcgcagcccggtggcttgaa 701
to top
>dbj|AB042064.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, complete cds,
           clone:p2-1
          Length = 653

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                              
Query: 169 gccttgccggactcctcgnannctggtggcttgaa 203
           |||||||||||||||||| |  | |||||||||||
Sbjct: 649 gccttgccggactcctcgcagcccggtggcttgaa 615
to top
>gb|AC138395.8| Mus musculus chromosome 3, clone RP24-128I24, complete sequence
          Length = 171020

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 50     acacacatttttaggaacaaataa 73
              |||||||| |||||||||||||||
Sbjct: 151686 acacacatgtttaggaacaaataa 151663
to top
>gb|AC129013.3| Mus musculus BAC clone RP24-550P17 from chromosome 6, complete sequence
          Length = 169094

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     tgggcactacacacattttt 61
              ||||||||||||||||||||
Sbjct: 109236 tgggcactacacacattttt 109217
to top
>gb|AC109169.13| Mus musculus chromosome 6, clone RP23-5D6, complete sequence
          Length = 204911

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     tgggcactacacacattttt 61
              ||||||||||||||||||||
Sbjct: 160268 tgggcactacacacattttt 160287
to top
>gb|AC160032.7| Mus musculus 6 BAC RP24-179I4 (Roswell Park Cancer Institute
            (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 200439

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 42   tgggcactacacacattttt 61
            ||||||||||||||||||||
Sbjct: 6759 tgggcactacacacattttt 6778
to top
>gb|AC159968.3| Mus musculus chromosome 3, clone RP23-256J12, complete sequence
          Length = 153684

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 50    acacacatttttaggaacaaataa 73
             |||||||| |||||||||||||||
Sbjct: 92069 acacacatgtttaggaacaaataa 92046
to top
>gb|AC107624.1| Homo sapiens chromosome 3 clone RP11-744H21, complete sequence
          Length = 170282

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    ttttaggaacaaataagaaa 77
             ||||||||||||||||||||
Sbjct: 72833 ttttaggaacaaataagaaa 72814
to top
>gb|AC099779.2| Homo sapiens chromosome 3 clone RP11-760G13, complete sequence
          Length = 198235

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    ttttaggaacaaataagaaa 77
             ||||||||||||||||||||
Sbjct: 26994 ttttaggaacaaataagaaa 27013
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 86      agaaggaaaacccaaagcaa 105
               ||||||||||||||||||||
Sbjct: 1491873 agaaggaaaacccaaagcaa 1491854
to top
>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0576F08
          Length = 135314

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    agaaggaaaacccaaagcaa 105
             ||||||||||||||||||||
Sbjct: 55294 agaaggaaaacccaaagcaa 55275
to top
>emb|AL096869.8|CNS00YVH Human chromosome 14 DNA sequence BAC R-1078H9 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 228097

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    atttttaggaacaaataaga 75
             ||||||||||||||||||||
Sbjct: 41341 atttttaggaacaaataaga 41322
to top
>emb|BX323846.2| Pig DNA sequence from clone XX-43B6, complete sequence
          Length = 80149

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 76    aagatgntggagaaggaaaaccc 98
             |||||| ||||||||||||||||
Sbjct: 65032 aagatgatggagaaggaaaaccc 65054
to top
>emb|AL139193.4|CNS01DXA Human chromosome 14 DNA sequence BAC R-661G16 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 162691

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    atttttaggaacaaataaga 75
             ||||||||||||||||||||
Sbjct: 49251 atttttaggaacaaataaga 49270
to top
>gb|M37328.1|WHTRUBIAA T.aestivum ribulose-1,5-bisphosphate carboxylase/oxygenase (RUBISCO)
            gene, exons 1 and 2
          Length = 2205

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 163  gtttatgccttgccggactcctcg 186
            ||||| ||||||||||||||||||
Sbjct: 1511 gtttaggccttgccggactcctcg 1488


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,492,457
Number of Sequences: 3902068
Number of extensions: 1492457
Number of successful extensions: 102020
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101940
Number of HSP's gapped (non-prelim): 63
length of query: 203
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 181
effective length of database: 17,147,199,772
effective search space: 3103643158732
effective search space used: 3103643158732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top