ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20p06 |
|---|---|
| Clone Library Name | barley_pub |
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 159 bits (403), Expect = 3e-39 Identities = 72/95 (75%), Positives = 85/95 (89%) Frame = -2 Query: 508 VINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVW 329 ++NLVG+VAG+SYAINSGYQSWGPLFGKLFF+ WVI+HLYPFLKGLMG+QNRTPTIV+VW Sbjct: 972 IVNLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVW 1031 Query: 328 SILLASIFSLLWVKIDPFISDTQKAVAMGQCGVNC 224 S+LLASIFSLLWV+IDPF S + +CG+NC Sbjct: 1032 SVLLASIFSLLWVRIDPFTSRVTGPDIL-ECGINC 1065
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 159 bits (401), Expect = 5e-39 Identities = 72/95 (75%), Positives = 85/95 (89%) Frame = -2 Query: 508 VINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVW 329 +IN+VG+VAGIS AIN+GYQSWGPLFGKLFFS WVI+HLYPFLKGLMG+QNRTPTIV++W Sbjct: 933 IINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIW 992 Query: 328 SILLASIFSLLWVKIDPFISDTQKAVAMGQCGVNC 224 S+LLASIFSLLWV+IDPF+ T K +CG+NC Sbjct: 993 SVLLASIFSLLWVRIDPFVLKT-KGPDTSKCGINC 1026
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 150 bits (380), Expect = 1e-36 Identities = 68/95 (71%), Positives = 84/95 (88%) Frame = -2 Query: 508 VINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVW 329 ++N+VG+VAG+S AIN+GY SWGPLFGKLFF+ WVI+HLYPFLKGLMG+QNRTPTIV++W Sbjct: 956 ILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLW 1015 Query: 328 SILLASIFSLLWVKIDPFISDTQKAVAMGQCGVNC 224 SILLASIFSL+WV+IDPF+ Q + QCGV+C Sbjct: 1016 SILLASIFSLVWVRIDPFL-PKQTGPLLKQCGVDC 1049
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 150 bits (378), Expect = 3e-36 Identities = 65/85 (76%), Positives = 79/85 (92%) Frame = -2 Query: 508 VINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVW 329 ++NL+G+VAG+SYA+NSGYQSWGPLFGKLFF++WVI HLYPFLKGL+G+QNRTPTIVIVW Sbjct: 987 LVNLIGIVAGVSYAVNSGYQSWGPLFGKLFFALWVIAHLYPFLKGLLGRQNRTPTIVIVW 1046 Query: 328 SILLASIFSLLWVKIDPFISDTQKA 254 S+LLASIFSLLWV+I+PF+ A Sbjct: 1047 SVLLASIFSLLWVRINPFVDANPNA 1071
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 146 bits (368), Expect = 4e-35 Identities = 65/82 (79%), Positives = 76/82 (92%) Frame = -2 Query: 508 VINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVW 329 ++NLVG+VAG+SYAINSGYQSWGPL GKL F+ WV+ HLYPFLKGL+G+QNRTPTIVIVW Sbjct: 974 LVNLVGIVAGVSYAINSGYQSWGPLMGKLLFAFWVVAHLYPFLKGLLGRQNRTPTIVIVW 1033 Query: 328 SILLASIFSLLWVKIDPFISDT 263 S LLASIFSLLWV+I+PF+S T Sbjct: 1034 SALLASIFSLLWVRINPFVSTT 1055
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 144 bits (362), Expect = 2e-34 Identities = 63/82 (76%), Positives = 77/82 (93%) Frame = -2 Query: 508 VINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVW 329 +INLVG+VAG S A+N GY++WGPLFGK+FF+ WVILHLYPFLKGLMG+QNRTPTIVI+W Sbjct: 890 IINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVILW 949 Query: 328 SILLASIFSLLWVKIDPFISDT 263 SILLAS+FSL+WV+I+PF+S T Sbjct: 950 SILLASVFSLVWVRINPFVSKT 971
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 139 bits (350), Expect = 4e-33 Identities = 59/95 (62%), Positives = 82/95 (86%) Frame = -2 Query: 508 VINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVW 329 +IN+VG++ G+S AIN+GY SWGPLFG+LFF++WVI+HLYPFLKGL+GKQ+R PTI++VW Sbjct: 994 IINIVGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGLLGKQDRVPTIILVW 1053 Query: 328 SILLASIFSLLWVKIDPFISDTQKAVAMGQCGVNC 224 SILLASI +LLWV+++PF+S + + CG++C Sbjct: 1054 SILLASILTLLWVRVNPFVSKDGPVLEI--CGLDC 1086
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 135 bits (340), Expect = 6e-32 Identities = 55/95 (57%), Positives = 82/95 (86%) Frame = -2 Query: 508 VINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVW 329 +IN++G++ G+S AI++GY SWGPLFG+LFF++WVI+HLYPFLKG++GKQ++ PTI++VW Sbjct: 990 IINIIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIVHLYPFLKGMLGKQDKMPTIIVVW 1049 Query: 328 SILLASIFSLLWVKIDPFISDTQKAVAMGQCGVNC 224 SILLASI +LLWV+++PF++ + + CG+NC Sbjct: 1050 SILLASILTLLWVRVNPFVAKGGPVLEI--CGLNC 1082
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 135 bits (339), Expect = 8e-32 Identities = 58/95 (61%), Positives = 81/95 (85%) Frame = -2 Query: 508 VINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVW 329 +IN++G++ GIS AI++GY SWGPLFG+LFF+ WVILHLYPFLKGL+GKQ+R PTI++VW Sbjct: 976 IINVIGVIVGISDAISNGYDSWGPLFGRLFFAFWVILHLYPFLKGLLGKQDRMPTIILVW 1035 Query: 328 SILLASIFSLLWVKIDPFISDTQKAVAMGQCGVNC 224 SILLASI +LLWV+++PF++ + + CG++C Sbjct: 1036 SILLASILTLLWVRVNPFVAKGGPILEI--CGLDC 1068
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 135 bits (339), Expect = 8e-32 Identities = 56/95 (58%), Positives = 82/95 (86%) Frame = -2 Query: 508 VINLVGMVAGISYAINSGYQSWGPLFGKLFFSIWVILHLYPFLKGLMGKQNRTPTIVIVW 329 +IN++G++ G+S AI++GY SWGPLFG+LFF++WVI+HLYPFLKGL+GKQ+R PTI++VW Sbjct: 991 IINVIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRMPTIIVVW 1050 Query: 328 SILLASIFSLLWVKIDPFISDTQKAVAMGQCGVNC 224 SILLASI +LLWV+++PF++ + + CG++C Sbjct: 1051 SILLASILTLLWVRVNPFVAKGGPILEI--CGLDC 1083
>P85B_HUMAN (O00459) Phosphatidylinositol 3-kinase regulatory beta subunit| (PI3-kinase p85-beta subunit) (PtdIns-3-kinase p85-beta) Length = 728 Score = 30.8 bits (68), Expect = 2.2 Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 19/77 (24%) Frame = -1 Query: 452 PILGPAL------WKALLLNLGDPPSLPLPQGSHGEAEPHADHRHRLVD----------- 324 P LGPA+ + LLL PPS P P G+ +EP D LV+ Sbjct: 237 PALGPAVRALGATFGPLLLRAPPPPSSPPPGGAPDGSEPSPDFPALLVEKLLQEHLEEQE 296 Query: 323 --PPRLHLLPPLGEDRP 279 PP L PP + P Sbjct: 297 VAPPALPPKPPKAKPAP 313
>FOXL2_HUMAN (P58012) Forkhead box protein L2| Length = 376 Score = 30.8 bits (68), Expect = 2.2 Identities = 14/31 (45%), Positives = 15/31 (48%) Frame = -1 Query: 410 LGDPPSLPLPQGSHGEAEPHADHRHRLVDPP 318 LG PP+ P P H PHA H H PP Sbjct: 277 LGGPPAAP-PPPPHPHPHPHAHHLHAAAAPP 306
>EXP9_STRR6 (P0A4D8) Probable ATP-dependent RNA helicase exp9 (EC 3.6.1.-)| (Exported protein 9) Length = 524 Score = 30.0 bits (66), Expect = 3.8 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +2 Query: 116 LDKNPSVFIYNQKIPSNPLRYLH*GGRYSRAPMIRSAVDAALPHGNGLLGI 268 LD + +YN IP +P Y+H GR RA ++ P+ G L I Sbjct: 303 LDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI 353
>EXP9_STRPN (P0A4D7) Probable ATP-dependent RNA helicase exp9 (EC 3.6.1.-)| (Exported protein 9) Length = 524 Score = 30.0 bits (66), Expect = 3.8 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +2 Query: 116 LDKNPSVFIYNQKIPSNPLRYLH*GGRYSRAPMIRSAVDAALPHGNGLLGI 268 LD + +YN IP +P Y+H GR RA ++ P+ G L I Sbjct: 303 LDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQI 353
>FA43B_HUMAN (Q6ZT52) Protein FAM43B| Length = 329 Score = 29.6 bits (65), Expect = 5.0 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +3 Query: 240 CPMATAFWVSEMKGSIFTQRREKMEARRIDQTMTM 344 CP W E G +F RR+K+E + D T T+ Sbjct: 40 CPDLLPDWPLERLGRVFRSRRQKVELNKEDPTYTV 74
>YD3A_SCHPO (Q10274) Hypothetical protein C13G7.10 in chromosome I| Length = 390 Score = 29.6 bits (65), Expect = 5.0 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Frame = -1 Query: 419 LLNLGDPPSLPL-PQGSHGEAEPHADHRHRLVDPPRLHLLPPLGED 285 L + G PPSLP+ P S +P + P LHL PPL + Sbjct: 311 LFSAGQPPSLPISPSTSQNSVQPFPFS----IQQPPLHLEPPLSSN 352
>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)| Length = 815 Score = 29.6 bits (65), Expect = 5.0 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 12/65 (18%) Frame = -1 Query: 413 NLGDPPSLPLPQGSHGEAEPHADHRHR------------LVDPPRLHLLPPLGEDRPFHF 270 ++G P+ + G HG A PH H H + PP H+ P G P H Sbjct: 616 HMGGGPNPHMMGGPHGNAGPHMGHGHMGGVPGPGPGPGGMNGPPHPHMSPHHG--HPHHH 673 Query: 269 RYPEG 255 P G Sbjct: 674 HNPMG 678
>VMSA_HPBGS (P03144) Major surface antigen precursor| Length = 428 Score = 29.3 bits (64), Expect = 6.5 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -3 Query: 504 STWWAWWQAYHTPSTAVTNP 445 + WW Y+TP+T VTNP Sbjct: 15 AAWWPTVGTYYTPTTTVTNP 34
>FOXL2_MOUSE (O88470) Forkhead box protein L2 (Pituitary forkhead factor)| (P-Frk) Length = 375 Score = 29.3 bits (64), Expect = 6.5 Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 2/33 (6%) Frame = -1 Query: 410 LGDPPSLPLPQGS--HGEAEPHADHRHRLVDPP 318 LG PP+ P P H PHA H H PP Sbjct: 273 LGGPPAAPPPPPPPPHPHPHPHAHHLHAAAAPP 305
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)| Length = 1362 Score = 28.9 bits (63), Expect = 8.5 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Frame = -1 Query: 398 PSLP--LPQGSHGEAEPHADHRHRLVDPPRLHLLPPLGEDRP 279 P LP LPQ PH + +H +V PP LH P RP Sbjct: 833 PELPPHLPQPPEHSTPPHLN-QHAVVSPPALHNALPQQPSRP 873
>HUTU_RALSO (Q8XW28) Urocanate hydratase (EC 4.2.1.49) (Urocanase)| (Imidazolonepropionate hydrolase) Length = 601 Score = 28.9 bits (63), Expect = 8.5 Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 12/99 (12%) Frame = -1 Query: 443 GPALWKALLLNLGDPPSLPLPQGSHGEAEPHADHRHRLVDPPRLHL----LPP------L 294 GP W AL GDP + E PH H HR +D R + LP L Sbjct: 404 GPFRWVALS---GDPEDIYKTDAKIKELFPHNAHVHRWLDMARERIAFQGLPARICWLGL 460 Query: 293 GEDRPFHFRYPEGRCHGAVRRQLLIGSSAL--GSICPPS 183 GE + E G ++ ++IG L GS+ P+ Sbjct: 461 GERHAAGLAFNEMVRKGELKAPIVIGRDHLDTGSVASPN 499
>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic| chromosome-associated protein) (MCAP) Length = 1400 Score = 28.9 bits (63), Expect = 8.5 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Frame = -1 Query: 398 PSLP--LPQGSHGEAEPHADHRHRLVDPPRLHLLPPLGEDRP 279 P LP LPQ PH + +H +V PP LH P RP Sbjct: 835 PELPPHLPQPPEHSTPPHLN-QHAVVSPPALHNALPQQPSRP 875
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 28.9 bits (63), Expect = 8.5 Identities = 22/64 (34%), Positives = 27/64 (42%) Frame = -1 Query: 452 PILGPALWKALLLNLGDPPSLPLPQGSHGEAEPHADHRHRLVDPPRLHLLPPLGEDRPFH 273 P+L ++ +L L+ PP P P H P DHR PR H LPP R Sbjct: 55 PVLTTTVFFSLFLSF--PPHPPRPPQDHHRPTPARDHR-----DPRDH-LPPTRTRRDHQ 106 Query: 272 FRYP 261 R P Sbjct: 107 HRPP 110
>MK15_RAT (Q9Z2A6) Mitogen-activated protein kinase 15 (EC 2.7.11.24)| (Extracellular signal-regulated kinase 7) Length = 547 Score = 28.9 bits (63), Expect = 8.5 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = -1 Query: 389 PLPQGSHGEAEPHADHRHRLVDPPRLHLLPPLGE-DRP 279 P PQ HG H + R + DP L+ LPP G +RP Sbjct: 395 PKPQNGHGHDPEHVEVRRQSSDP--LYQLPPPGSGERP 430 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,226,827 Number of Sequences: 219361 Number of extensions: 1642695 Number of successful extensions: 4782 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4573 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4776 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
