Clone Name | rbasd20p04 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_473064.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2541 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 217 agccttccttctgcgcttctttccagt 243 ||||||||||||||||||||||||||| Sbjct: 2532 agccttccttctgcgcttctttccagt 2506
>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02, complete sequence Length = 173171 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 217 agccttccttctgcgcttctttccagt 243 ||||||||||||||||||||||||||| Sbjct: 135105 agccttccttctgcgcttctttccagt 135131
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 217 agccttccttctgcgcttctttccagt 243 ||||||||||||||||||||||||||| Sbjct: 25014520 agccttccttctgcgcttctttccagt 25014546
>dbj|AB117993.1| Oryza sativa (japonica cultivar-group) bip106 mRNA for BRI1-KD interacting protein 106, partial cds Length = 709 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 217 agccttccttctgcgcttctttccagt 243 ||||||||||||||||||||||||||| Sbjct: 700 agccttccttctgcgcttctttccagt 674
>dbj|AK068884.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002E10, full insert sequence Length = 2250 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 217 agccttccttctgcgcttctttccagt 243 ||||||||||||||||||||||||||| Sbjct: 1887 agccttccttctgcgcttctttccagt 1861
>dbj|AK068612.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155D11, full insert sequence Length = 3038 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 217 agccttccttctgcgcttctttccagt 243 ||||||||||||||||||||||||||| Sbjct: 2685 agccttccttctgcgcttctttccagt 2659
>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete sequence Length = 148644 Score = 54.0 bits (27), Expect = 4e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 217 agccttccttctgcgcttctttccagt 243 ||||||||||||||||||||||||||| Sbjct: 142757 agccttccttctgcgcttctttccagt 142783
>ref|XM_466696.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2870 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Minus Query: 216 aagccttccttctgcgcttctttcc 240 ||||||||||||||||||||||||| Sbjct: 2529 aagccttccttctgcgcttctttcc 2505 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 216 aagccttccttctgcgcttcttt 238 ||||||||||||||||||||||| Sbjct: 2589 aagccttccttctgcgcttcttt 2567
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Plus Query: 216 aagccttccttctgcgcttctttcc 240 ||||||||||||||||||||||||| Sbjct: 24159656 aagccttccttctgcgcttctttcc 24159680 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 216 aagccttccttctgcgcttcttt 238 ||||||||||||||||||||||| Sbjct: 24159596 aagccttccttctgcgcttcttt 24159618
>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A05 Length = 174290 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Plus Query: 216 aagccttccttctgcgcttctttcc 240 ||||||||||||||||||||||||| Sbjct: 118397 aagccttccttctgcgcttctttcc 118421 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 216 aagccttccttctgcgcttcttt 238 ||||||||||||||||||||||| Sbjct: 118337 aagccttccttctgcgcttcttt 118359
>dbj|AB118021.1| Oryza sativa (japonica cultivar-group) bip135 mRNA for BRI1-KD interacting protein 135, partial cds Length = 1850 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Minus Query: 216 aagccttccttctgcgcttctttcc 240 ||||||||||||||||||||||||| Sbjct: 1481 aagccttccttctgcgcttctttcc 1457 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 216 aagccttccttctgcgcttcttt 238 ||||||||||||||||||||||| Sbjct: 1541 aagccttccttctgcgcttcttt 1519
>dbj|AK072455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114I24, full insert sequence Length = 2870 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Minus Query: 216 aagccttccttctgcgcttctttcc 240 ||||||||||||||||||||||||| Sbjct: 2529 aagccttccttctgcgcttctttcc 2505 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 216 aagccttccttctgcgcttcttt 238 ||||||||||||||||||||||| Sbjct: 2589 aagccttccttctgcgcttcttt 2567
>gb|AY104489.1| Zea mays PCO108349 mRNA sequence Length = 553 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Minus Query: 216 aagccttccttctgcgcttctttcc 240 ||||||||||||||||||||||||| Sbjct: 197 aagccttccttctgcgcttctttcc 173
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 229 gcgcttctttccagttgaagac 250 |||||||||||||||||||||| Sbjct: 56117 gcgcttctttccagttgaagac 56096
>ref|XM_510372.1| PREDICTED: Pan troglodytes LOC453400 (LOC453400), mRNA Length = 1977 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 agatgtttcctgccacagcc 53 |||||||||||||||||||| Sbjct: 931 agatgtttcctgccacagcc 912
>ref|XM_610426.2| PREDICTED: Bos taurus similar to solute carrier family 28 (sodium-coupled nucleoside transporter), member 2 (LOC531921), mRNA Length = 2333 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 agatgtttcctgccacagcc 53 |||||||||||||||||||| Sbjct: 847 agatgtttcctgccacagcc 828
>gb|AC127342.3| Mus musculus BAC clone RP23-191B18 from chromosome 18, complete sequence Length = 185210 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 atccttgcccttgctcccaa 452 |||||||||||||||||||| Sbjct: 127701 atccttgcccttgctcccaa 127682
>ref|NM_004212.1| Homo sapiens solute carrier family 28 (sodium-coupled nucleoside transporter), member 2 (SLC28A2), mRNA Length = 2459 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 agatgtttcctgccacagcc 53 |||||||||||||||||||| Sbjct: 990 agatgtttcctgccacagcc 971
>emb|AL591742.7| Human DNA sequence from clone RP4-590F24 on chromosome 1 Contains the 3' end of the gene for HNOEL-iso protein (HNOEL-iso) and a ribosomal protein L13a (RPL13A) pseudogene, complete sequence Length = 86049 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 aagcttctggttgctgctgt 479 |||||||||||||||||||| Sbjct: 80877 aagcttctggttgctgctgt 80896
>emb|AJ719939.1| Gallus gallus mRNA for hypothetical protein, clone 8j15 Length = 2157 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 ccagtcagcagacagacaaa 108 |||||||||||||||||||| Sbjct: 366 ccagtcagcagacagacaaa 385
>emb|CR859018.1| Pongo pygmaeus mRNA; cDNA DKFZp469H151 (from clone DKFZp469H151) Length = 2403 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 ccttccttctgcgcttcttt 238 |||||||||||||||||||| Sbjct: 503 ccttccttctgcgcttcttt 484
>ref|NM_001006449.1| Gallus gallus signal recognition particle 72kDa (SRP72), mRNA Length = 2157 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 ccagtcagcagacagacaaa 108 |||||||||||||||||||| Sbjct: 366 ccagtcagcagacagacaaa 385
>gb|AY957499.1| Bos taurus glutamate-cysteine ligase catalytic subunit (GCLC), MHC class II antigen (DSB), MHC class II antigen (DYA), MHC class II antigen (DYB), MHC class II antigen (DOB), transporter 2 ATP-binding cassette sub-family B (TAP2), proteasome subunit beta type 8 (PSMB8), transporter 1 ATP-binding cassette sub-family B (TAP1), proteosome subunit beta type 9 (PSMB9), histone H2B-like (H2B), MHC class II antigen (DMB), MHC class II antigen (DMA), bromodomain containing 2 (BRD2), MHC class II antigen (DOA), collagen type XI alpha 2 (COL11A2), retinoid X receptor beta (RXRB), solute carrier family 39 zinc transporter member 7 (HKE4), and hydroxysteroid (17-beta) dehydrogenase 8 (HKE6) genes, complete cds; and ring finger protein 1 (RING1) gene, partial cds Length = 447010 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 22 tacagctactgcagatgtttcctg 45 ||||| |||||||||||||||||| Sbjct: 278165 tacagatactgcagatgtttcctg 278188
>gb|AC092612.3| Homo sapiens BAC clone RP11-174F8 from 4, complete sequence Length = 145706 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 219 ccttccttctgcgcttcttt 238 |||||||||||||||||||| Sbjct: 134533 ccttccttctgcgcttcttt 134552
>gb|AC051619.7|AC051619 Homo sapiens chromosome 15 clone CTD-2651B20 map 15q21.1, complete sequence Length = 213999 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 agatgtttcctgccacagcc 53 |||||||||||||||||||| Sbjct: 137446 agatgtttcctgccacagcc 137427
>gb|AC105118.23| Homo sapiens chromosome 8, clone RP11-909N17, complete sequence Length = 179941 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 agccttccttctgcgcttct 236 |||||||||||||||||||| Sbjct: 45167 agccttccttctgcgcttct 45148
>dbj|AK222709.1| Homo sapiens mRNA for solute carrier family 28 (sodium-coupled nucleoside transporter), member 2 variant, clone: COL02243 Length = 2298 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 agatgtttcctgccacagcc 53 |||||||||||||||||||| Sbjct: 996 agatgtttcctgccacagcc 977
>gb|BC093737.1| Homo sapiens solute carrier family 28 (sodium-coupled nucleoside transporter), member 2, mRNA (cDNA clone MGC:120772 IMAGE:7939582), complete cds Length = 2095 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 agatgtttcctgccacagcc 53 |||||||||||||||||||| Sbjct: 959 agatgtttcctgccacagcc 940
>dbj|AP006435.1| Sus scrofa CC chemokine receptor genes (CCR3, CCR2, CCR5, CCRL2, LTF), complete and partial cds, clone: 0479G08 Length = 144233 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ttccatccttgcccttgctc 448 |||||||||||||||||||| Sbjct: 80463 ttccatccttgcccttgctc 80444
>dbj|AP006185.1| Sus scrofa CC chemokine receptor genes (CCR2, CCR5, CCRL2, LTF, TMEM7, LRRC2), complete cds, clone: 0475A03 Length = 165558 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 ttccatccttgcccttgctc 448 |||||||||||||||||||| Sbjct: 11858 ttccatccttgcccttgctc 11839
>gb|AC091619.3| Papio anubis clone RP41-139B7, complete sequence Length = 181302 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 ctgcagatgtttcctgccac 49 |||||||||||||||||||| Sbjct: 67320 ctgcagatgtttcctgccac 67301
>gb|AC123634.10| Mus musculus chromosome 3, clone RP24-434E24, complete sequence Length = 176948 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 agatgcctcctgctccattt 281 |||||||||||||||||||| Sbjct: 12165 agatgcctcctgctccattt 12184
>gb|BC112047.1| Homo sapiens solute carrier family 28 (sodium-coupled nucleoside transporter), member 2, mRNA (cDNA clone MGC:138252 IMAGE:8327515), complete cds Length = 2107 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 agatgtttcctgccacagcc 53 |||||||||||||||||||| Sbjct: 971 agatgtttcctgccacagcc 952
>gb|AC124474.4| Mus musculus BAC clone RP24-88C10 from 1, complete sequence Length = 225413 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 426 tgcttccatccttgcccttg 445 |||||||||||||||||||| Sbjct: 137460 tgcttccatccttgcccttg 137441
>gb|U84392.1|HSU84392 Human Na+-dependent purine specific transporter mRNA, complete cds Length = 2459 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 agatgtttcctgccacagcc 53 |||||||||||||||||||| Sbjct: 990 agatgtttcctgccacagcc 971
>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome Length = 4096345 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 gcttctttccagttgaagac 250 |||||||||||||||||||| Sbjct: 1616645 gcttctttccagttgaagac 1616626
>gb|AF036109.1|AF036109 Homo sapiens Na+/nucleoside cotransporter (hCNT2) mRNA, complete cds Length = 1995 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 agatgtttcctgccacagcc 53 |||||||||||||||||||| Sbjct: 945 agatgtttcctgccacagcc 926
>gb|AC165416.12| Mus musculus chromosome 3, clone RP23-86I19, complete sequence Length = 130155 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 agatgcctcctgctccattt 281 |||||||||||||||||||| Sbjct: 76469 agatgcctcctgctccattt 76488 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,627,831 Number of Sequences: 3902068 Number of extensions: 3627831 Number of successful extensions: 62509 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62402 Number of HSP's gapped (non-prelim): 107 length of query: 485 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 463 effective length of database: 17,147,199,772 effective search space: 7939153494436 effective search space used: 7939153494436 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)