ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SRK6_BRAOE (Q09092) Putative serine/threonine-protein kinase rec... 47 1e-05
2BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated rec... 33 0.14
3RLCK7_ARATH (Q9LQQ8) Probable serine/threonine-protein kinase RL... 32 0.41
4RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC... 30 1.2
5CCD16_BRARE (Q6P0I6) Coiled-coil domain-containing protein 16 28 5.9
6KR15_ICHV1 (Q00097) Gene 15 protein kinase (EC 2.7.11.1) 28 7.7

>SRK6_BRAOE (Q09092) Putative serine/threonine-protein kinase receptor|
           precursor (EC 2.7.11.1) (S-receptor kinase) (SRK)
          Length = 849

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 21/50 (42%), Positives = 30/50 (60%)
 Frame = -3

Query: 272 QVRRCIQVAXLCVHMNPRNRPLMSSIVMMLATENAXLPEPNEPGANVAKS 123
           +V +CIQ+  LCV     +RP MSS+V M  +E   +P+P  PG  V +S
Sbjct: 777 EVLKCIQIGLLCVQELAEHRPAMSSVVWMFGSEATEIPQPKPPGYCVRRS 826



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>BAK1_ARATH (Q94F62) BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1|
           precursor (EC 2.7.11.1) (BRI1-associated receptor kinase
           1) (Somatic embryogenesis receptor-like kinase 3)
          Length = 615

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 272 QVRRCIQVAXLCVHMNPRNRPLMSSIVMML 183
           +V + IQVA LC   +P  RP MS +V ML
Sbjct: 534 EVEQLIQVALLCTQSSPMERPKMSEVVRML 563



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>RLCK7_ARATH (Q9LQQ8) Probable serine/threonine-protein kinase RLCKVII (EC|
           2.7.11.1)
          Length = 423

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = -3

Query: 263 RCIQVAXLCVHMNPRNRPLMSSIVMMLATENAXLPEPNEPGANVAKSTS 117
           + + ++ +CV   P  RP++S +V+ L    +   +PN P ++  K+ S
Sbjct: 351 QALAISAMCVQEQPTMRPVVSDVVLALNFLASSKYDPNSPSSSSGKNPS 399



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>RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC 2.7.11.1)|
          Length = 999

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -3

Query: 272  QVRRCIQVAXLCVHMNPRNRPLMSSIVMMLATENAXLP--EPNEPGANVAKSTSXGXLSQ 99
            ++ + I +  LC    P NRP M  +V+ML   +  +P   PN       +S + G LS 
Sbjct: 935  EISKVIHIGLLCTSPLPLNRPSMRKVVIMLQEVSGAVPCSSPN----TSKRSKTGGKLSP 990

Query: 98   TXSE 87
              +E
Sbjct: 991  YYTE 994



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>CCD16_BRARE (Q6P0I6) Coiled-coil domain-containing protein 16|
          Length = 326

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 123 ALCDVCSRLIXLWQRGILGGQHHD 194
           ALCD   +   LWQ  +LG QH D
Sbjct: 51  ALCDAPVKNALLWQTHVLGKQHKD 74



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>KR15_ICHV1 (Q00097) Gene 15 protein kinase (EC 2.7.11.1)|
          Length = 380

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -3

Query: 284 CDHSQVRRCIQVAXLCVHMNPRNRPLMSSIVMMLA---TENAXLPE 156
           C+H      + +A  C+  NPR RP ++ ++  L     E A  PE
Sbjct: 334 CEHRAFLDYLTIARGCLRTNPRERPRLTLLIAQLTKFIREVATQPE 379


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,751,500
Number of Sequences: 219361
Number of extensions: 528565
Number of successful extensions: 902
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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