ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
2dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
3dbj|AK109693.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
4gb|AY534543.1| Raphanus sativus haplotype S31 S-locus receptor k... 46 0.065
5emb|Y14286.1|BOY14286 Brassica oleracea SFR3 gene, partial 42 1.0
6gb|AY772645.1| Arabidopsis thaliana voucher CS1244 SRK (SRK) pse... 42 1.0
7gb|AY772647.1| Arabidopsis thaliana voucher CS6764 SRK (SRK) pse... 42 1.0
8gb|AY772646.1| Arabidopsis thaliana voucher CS6751 SRK (SRK) pse... 42 1.0
9gb|AY772641.1| Arabidopsis thaliana voucher CS6764 SRK (SRK) pse... 42 1.0
10gb|AY772640.1| Arabidopsis thaliana voucher CS6751 SRK (SRK) pse... 42 1.0
11gb|AY772639.1| Arabidopsis thaliana voucher CS1244 SRK (SRK) pse... 42 1.0
12dbj|AB052756.1| Arabidopsis lyrata mRNA for SRKb, complete cds 42 1.0

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                            
Query: 140      ctccaggctcattnggctctggcagcgnggcattctcggtggccaacatcatgacaattg 199
                ||||||||||||| |||| ||||| || |||||||||  |||| | |||||| |||| ||
Sbjct: 33236523 ctccaggctcatttggctgtggcaacgtggcattctcactggctagcatcataacaactg 33236464

                       
Query: 200      aagacat 206
                |||||||
Sbjct: 33236463 aagacat 33236457



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>dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1070A12
          Length = 148449

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                         
Query: 140   ctccaggctcattnggctctggcagcgnggcattctcggtggccaacatcatgacaattg 199
             ||||||||||||| |||| ||||| || |||||||||  |||| | |||||| |||| ||
Sbjct: 29770 ctccaggctcatttggctgtggcaacgtggcattctcactggctagcatcataacaactg 29711

                    
Query: 200   aagacat 206
             |||||||
Sbjct: 29710 aagacat 29704



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>dbj|AK109693.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-E09, full
            insert sequence
          Length = 1868

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 57/67 (85%)
 Strand = Plus / Minus

                                                                        
Query: 140  ctccaggctcattnggctctggcagcgnggcattctcggtggccaacatcatgacaattg 199
            ||||||||||||| |||| ||||| || |||||||||  |||| | |||||| |||| ||
Sbjct: 1515 ctccaggctcatttggctgtggcaacgtggcattctcactggctagcatcataacaactg 1456

                   
Query: 200  aagacat 206
            |||||||
Sbjct: 1455 aagacat 1449



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>gb|AY534543.1| Raphanus sativus haplotype S31 S-locus receptor kinase gene,
           partial cds
          Length = 1188

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 232 tgaacacacaaganagcaacttgtatgcat 261
           ||||||||||||| | ||||||||||||||
Sbjct: 974 tgaacacacaagagaccaacttgtatgcat 945



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>emb|Y14286.1|BOY14286 Brassica oleracea SFR3 gene, partial
          Length = 2852

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 232  tgaacacacaaganagcaacttgtatgcatct 263
            ||||||||||||| | ||| ||||||||||||
Sbjct: 2529 tgaacacacaagagaccaatttgtatgcatct 2498



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>gb|AY772645.1| Arabidopsis thaliana voucher CS1244 SRK (SRK) pseudogene mRNA,
            complete sequence
          Length = 2735

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 232  tgaacacacaaganagcaacttgtatgcatct 263
            ||||||||||||| | ||| ||||||||||||
Sbjct: 2438 tgaacacacaagagaccaatttgtatgcatct 2407



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>gb|AY772647.1| Arabidopsis thaliana voucher CS6764 SRK (SRK) pseudogene mRNA,
            complete sequence
          Length = 2751

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 232  tgaacacacaaganagcaacttgtatgcatct 263
            ||||||||||||| | ||| ||||||||||||
Sbjct: 2384 tgaacacacaagagaccaatttgtatgcatct 2353



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>gb|AY772646.1| Arabidopsis thaliana voucher CS6751 SRK (SRK) pseudogene mRNA,
            complete sequence
          Length = 2681

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 232  tgaacacacaaganagcaacttgtatgcatct 263
            ||||||||||||| | ||| ||||||||||||
Sbjct: 2384 tgaacacacaagagaccaatttgtatgcatct 2353



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>gb|AY772641.1| Arabidopsis thaliana voucher CS6764 SRK (SRK) pseudogene, complete
            sequence
          Length = 4105

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 232  tgaacacacaaganagcaacttgtatgcatct 263
            ||||||||||||| | ||| ||||||||||||
Sbjct: 3757 tgaacacacaagagaccaatttgtatgcatct 3726



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>gb|AY772640.1| Arabidopsis thaliana voucher CS6751 SRK (SRK) pseudogene, complete
            sequence
          Length = 4074

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 232  tgaacacacaaganagcaacttgtatgcatct 263
            ||||||||||||| | ||| ||||||||||||
Sbjct: 3759 tgaacacacaagagaccaatttgtatgcatct 3728



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>gb|AY772639.1| Arabidopsis thaliana voucher CS1244 SRK (SRK) pseudogene, complete
            sequence
          Length = 4126

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 232  tgaacacacaaganagcaacttgtatgcatct 263
            ||||||||||||| | ||| ||||||||||||
Sbjct: 3775 tgaacacacaagagaccaatttgtatgcatct 3744



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>dbj|AB052756.1| Arabidopsis lyrata mRNA for SRKb, complete cds
          Length = 2680

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 232  tgaacacacaaganagcaacttgtatgcatct 263
            ||||||||||||| | ||| ||||||||||||
Sbjct: 2363 tgaacacacaagagaccaatttgtatgcatct 2332


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,566,197
Number of Sequences: 3902068
Number of extensions: 1566197
Number of successful extensions: 22389
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22373
Number of HSP's gapped (non-prelim): 16
length of query: 304
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 282
effective length of database: 17,147,199,772
effective search space: 4835510335704
effective search space used: 4835510335704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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