Clone Name | rbasd21e10 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 58.0 bits (29), Expect = 2e-05 Identities = 57/67 (85%) Strand = Plus / Minus Query: 140 ctccaggctcattnggctctggcagcgnggcattctcggtggccaacatcatgacaattg 199 ||||||||||||| |||| ||||| || ||||||||| |||| | |||||| |||| || Sbjct: 33236523 ctccaggctcatttggctgtggcaacgtggcattctcactggctagcatcataacaactg 33236464 Query: 200 aagacat 206 ||||||| Sbjct: 33236463 aagacat 33236457
>dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1070A12 Length = 148449 Score = 58.0 bits (29), Expect = 2e-05 Identities = 57/67 (85%) Strand = Plus / Minus Query: 140 ctccaggctcattnggctctggcagcgnggcattctcggtggccaacatcatgacaattg 199 ||||||||||||| |||| ||||| || ||||||||| |||| | |||||| |||| || Sbjct: 29770 ctccaggctcatttggctgtggcaacgtggcattctcactggctagcatcataacaactg 29711 Query: 200 aagacat 206 ||||||| Sbjct: 29710 aagacat 29704
>dbj|AK109693.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-E09, full insert sequence Length = 1868 Score = 58.0 bits (29), Expect = 2e-05 Identities = 57/67 (85%) Strand = Plus / Minus Query: 140 ctccaggctcattnggctctggcagcgnggcattctcggtggccaacatcatgacaattg 199 ||||||||||||| |||| ||||| || ||||||||| |||| | |||||| |||| || Sbjct: 1515 ctccaggctcatttggctgtggcaacgtggcattctcactggctagcatcataacaactg 1456 Query: 200 aagacat 206 ||||||| Sbjct: 1455 aagacat 1449
>gb|AY534543.1| Raphanus sativus haplotype S31 S-locus receptor kinase gene, partial cds Length = 1188 Score = 46.1 bits (23), Expect = 0.065 Identities = 28/30 (93%) Strand = Plus / Minus Query: 232 tgaacacacaaganagcaacttgtatgcat 261 ||||||||||||| | |||||||||||||| Sbjct: 974 tgaacacacaagagaccaacttgtatgcat 945
>emb|Y14286.1|BOY14286 Brassica oleracea SFR3 gene, partial Length = 2852 Score = 42.1 bits (21), Expect = 1.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 232 tgaacacacaaganagcaacttgtatgcatct 263 ||||||||||||| | ||| |||||||||||| Sbjct: 2529 tgaacacacaagagaccaatttgtatgcatct 2498
>gb|AY772645.1| Arabidopsis thaliana voucher CS1244 SRK (SRK) pseudogene mRNA, complete sequence Length = 2735 Score = 42.1 bits (21), Expect = 1.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 232 tgaacacacaaganagcaacttgtatgcatct 263 ||||||||||||| | ||| |||||||||||| Sbjct: 2438 tgaacacacaagagaccaatttgtatgcatct 2407
>gb|AY772647.1| Arabidopsis thaliana voucher CS6764 SRK (SRK) pseudogene mRNA, complete sequence Length = 2751 Score = 42.1 bits (21), Expect = 1.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 232 tgaacacacaaganagcaacttgtatgcatct 263 ||||||||||||| | ||| |||||||||||| Sbjct: 2384 tgaacacacaagagaccaatttgtatgcatct 2353
>gb|AY772646.1| Arabidopsis thaliana voucher CS6751 SRK (SRK) pseudogene mRNA, complete sequence Length = 2681 Score = 42.1 bits (21), Expect = 1.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 232 tgaacacacaaganagcaacttgtatgcatct 263 ||||||||||||| | ||| |||||||||||| Sbjct: 2384 tgaacacacaagagaccaatttgtatgcatct 2353
>gb|AY772641.1| Arabidopsis thaliana voucher CS6764 SRK (SRK) pseudogene, complete sequence Length = 4105 Score = 42.1 bits (21), Expect = 1.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 232 tgaacacacaaganagcaacttgtatgcatct 263 ||||||||||||| | ||| |||||||||||| Sbjct: 3757 tgaacacacaagagaccaatttgtatgcatct 3726
>gb|AY772640.1| Arabidopsis thaliana voucher CS6751 SRK (SRK) pseudogene, complete sequence Length = 4074 Score = 42.1 bits (21), Expect = 1.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 232 tgaacacacaaganagcaacttgtatgcatct 263 ||||||||||||| | ||| |||||||||||| Sbjct: 3759 tgaacacacaagagaccaatttgtatgcatct 3728
>gb|AY772639.1| Arabidopsis thaliana voucher CS1244 SRK (SRK) pseudogene, complete sequence Length = 4126 Score = 42.1 bits (21), Expect = 1.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 232 tgaacacacaaganagcaacttgtatgcatct 263 ||||||||||||| | ||| |||||||||||| Sbjct: 3775 tgaacacacaagagaccaatttgtatgcatct 3744
>dbj|AB052756.1| Arabidopsis lyrata mRNA for SRKb, complete cds Length = 2680 Score = 42.1 bits (21), Expect = 1.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 232 tgaacacacaaganagcaacttgtatgcatct 263 ||||||||||||| | ||| |||||||||||| Sbjct: 2363 tgaacacacaagagaccaatttgtatgcatct 2332 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,566,197 Number of Sequences: 3902068 Number of extensions: 1566197 Number of successful extensions: 22389 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22373 Number of HSP's gapped (non-prelim): 16 length of query: 304 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 282 effective length of database: 17,147,199,772 effective search space: 4835510335704 effective search space used: 4835510335704 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)