ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21e06 |
|---|---|
| Clone Library Name | barley_pub |
>Y1426_METJA (Q58821) Hypothetical protein MJ1426| Length = 168 Score = 48.1 bits (113), Expect = 2e-05 Identities = 22/47 (46%), Positives = 30/47 (63%) Frame = -3 Query: 525 RTKIADVMTSPAITLSCDKTVTDAAALMLKKKIHRLPIVNQDNQVIG 385 +TK+ DVMT I D T+ DAA LM+K I RLP+V+ + +IG Sbjct: 110 KTKVRDVMTRKVIVAKPDMTINDAAKLMVKNNIKRLPVVDDEGNLIG 156
>YNI1_METIV (P25768) Hypothetical protein in nifH2 5'region (Fragment)| Length = 96 Score = 42.7 bits (99), Expect = 9e-04 Identities = 18/55 (32%), Positives = 35/55 (63%) Frame = -3 Query: 552 IARGLHMGSRTKIADVMTSPAITLSCDKTVTDAAALMLKKKIHRLPIVNQDNQVI 388 IA + + + ++MT T D +++DAAALM K ++RLP+V+++N+++ Sbjct: 41 IANDVRKAASVLVGEIMTKKVRTTKKDASISDAAALMDKHNVNRLPVVDENNKLV 95
>Y525_METKA (P50100) Hypothetical protein MK0525 (OrfX)| Length = 196 Score = 41.2 bits (95), Expect = 0.003 Identities = 19/42 (45%), Positives = 28/42 (66%) Frame = -3 Query: 510 DVMTSPAITLSCDKTVTDAAALMLKKKIHRLPIVNQDNQVIG 385 D+M+ P IT+ D V +A LM+ K I RLPIV+ + ++IG Sbjct: 74 DIMSQPVITVEEDMEVNEAVKLMVDKGIRRLPIVDDNGKLIG 115
>IMDH_HELPY (P56088) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP| dehydrogenase) (IMPDH) (IMPD) Length = 481 Score = 37.4 bits (85), Expect(2) = 0.003 Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Frame = -3 Query: 519 KIADVMTS-PAITLSCDKTVTDAAALMLKKKIHRLPIVNQDNQVIG 385 K+ DVMT P +T ++ +A+ LM K KI +LPIV++DN + G Sbjct: 147 KVGDVMTKMPLVTAHVGISLDEASDLMHKHKIEKLPIVDKDNVLKG 192 Score = 22.7 bits (47), Expect(2) = 0.003 Identities = 8/21 (38%), Positives = 13/21 (61%) Frame = -2 Query: 613 VSGLPVVDSARRCVGVVVKSD 551 +SG+PVVD +G++ D Sbjct: 117 ISGVPVVDDKGLLIGILTNRD 137
>IMDH_HELPJ (Q9ZL14) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP| dehydrogenase) (IMPDH) (IMPD) Length = 481 Score = 37.4 bits (85), Expect(2) = 0.003 Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Frame = -3 Query: 519 KIADVMTS-PAITLSCDKTVTDAAALMLKKKIHRLPIVNQDNQVIG 385 K+ DVMT P +T ++ +A+ LM K KI +LPIV++DN + G Sbjct: 147 KVGDVMTKMPLVTAHVGISLDEASDLMHKHKIEKLPIVDKDNVLKG 192 Score = 22.7 bits (47), Expect(2) = 0.003 Identities = 8/21 (38%), Positives = 13/21 (61%) Frame = -2 Query: 613 VSGLPVVDSARRCVGVVVKSD 551 +SG+PVVD +G++ D Sbjct: 117 ISGVPVVDDKGLLIGILTNRD 137
>Y922_METJA (Q58332) Hypothetical protein MJ0922| Length = 138 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/45 (44%), Positives = 28/45 (62%) Frame = -3 Query: 519 KIADVMTSPAITLSCDKTVTDAAALMLKKKIHRLPIVNQDNQVIG 385 K+ DVMT IT + V +A MLK KI LP+++ +N+VIG Sbjct: 9 KVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIG 53
>IMDH_PYRFU (P42851) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP| dehydrogenase) (IMPDH) (IMPD) Length = 485 Score = 37.4 bits (85), Expect = 0.037 Identities = 15/44 (34%), Positives = 29/44 (65%) Frame = -3 Query: 516 IADVMTSPAITLSCDKTVTDAAALMLKKKIHRLPIVNQDNQVIG 385 + ++MT IT+ V +A +M++ +I RLP+VN+D +++G Sbjct: 152 VKELMTREVITVPESVDVEEALKIMMENRIDRLPVVNEDGKLVG 195
>Y1678_HAEIN (P45313) Probable phosphosugar isomerase HI1678 (EC 5.-.-.-)| Length = 337 Score = 37.0 bits (84), Expect = 0.049 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%) Frame = -3 Query: 531 GSRTKIA-DVMTSPAITLSCDKTVTDAAALMLKKKIHRLPIVNQDNQVIG 385 G+ K A D MTS T+ D+ ++ A M KKIH L +VN +N V+G Sbjct: 282 GTLNKTAKDFMTSSPKTIHQDEFLSKAEDFMKAKKIHSLVVVNDENHVVG 331
>IMDH_METJA (Q59011) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP| dehydrogenase) (IMPDH) (IMPD) Length = 496 Score = 37.0 bits (84), Expect = 0.049 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = -3 Query: 519 KIADVMTSPAITLSCDKTVTDAAALMLKKKIHRLPIVNQDNQVIG 385 K+ DVMT + D +A LM ++ RLPIV+ +N++IG Sbjct: 151 KVKDVMTKDVVCAKEDVEEEEALELMYANRVERLPIVDDENRLIG 195 Score = 30.4 bits (67), Expect = 4.6 Identities = 16/62 (25%), Positives = 30/62 (48%) Frame = -2 Query: 613 VSGLPVVDSARRCVGVVVKSDRARASHGVKDEDCRCDDISSNHAIMR*NSDRCRSSDAQE 434 +SGLPVVD+ + VG++ D ++D+ + D+ + + C D +E Sbjct: 121 ISGLPVVDNEDKLVGIITHRD----VKAIEDKTKKVKDVMTKDVV-------CAKEDVEE 169 Query: 433 ED 428 E+ Sbjct: 170 EE 171
>YHCV_BACSU (P54606) Hypothetical protein yhcV| Length = 140 Score = 35.8 bits (81), Expect = 0.11 Identities = 16/45 (35%), Positives = 33/45 (73%) Frame = -3 Query: 525 RTKIADVMTSPAITLSCDKTVTDAAALMLKKKIHRLPIVNQDNQV 391 +T +++VM++ ++ + + ++ DA+ LM + +I RLPIV+Q+N V Sbjct: 65 QTPVSEVMSTELVSGNPNMSLEDASQLMAQHQIRRLPIVDQNNLV 109
>YE45_SCHPO (O13965) Hypothetical protein C24C9.05c in chromosome I| Length = 730 Score = 35.8 bits (81), Expect = 0.11 Identities = 17/53 (32%), Positives = 32/53 (60%) Frame = -3 Query: 564 SSRAIARGLHMGSRTKIADVMTSPAITLSCDKTVTDAAALMLKKKIHRLPIVN 406 ++R + GL+ +T IAD+M++ + ++ D DA LM++ K LP+V+ Sbjct: 116 ATRCVGAGLN-ARQTLIADIMSTSPLCITSDTRFDDALLLMIEHKFRHLPVVS 167
>Y100_METJA (Q57564) Hypothetical protein MJ0100| Length = 509 Score = 32.3 bits (72), Expect = 1.2 Identities = 15/30 (50%), Positives = 19/30 (63%) Frame = -2 Query: 613 VSGLPVVDSARRCVGVVVKSDRARASHGVK 524 +SG+PVVD RR VG+V D +R G K Sbjct: 480 ISGVPVVDDYRRVVGIVTSEDISRLFGGKK 509 Score = 30.8 bits (68), Expect(2) = 0.14 Identities = 19/56 (33%), Positives = 29/56 (51%) Frame = -3 Query: 552 IARGLHMGSRTKIADVMTSPAITLSCDKTVTDAAALMLKKKIHRLPIVNQDNQVIG 385 IA+ L +T I ++MT IT D+ V A M K I +P+V+ +V+G Sbjct: 440 IAKALAQNKKT-IEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVG 494 Score = 23.5 bits (49), Expect(2) = 0.14 Identities = 9/25 (36%), Positives = 16/25 (64%) Frame = -2 Query: 613 VSGLPVVDSARRCVGVVVKSDRARA 539 ++ LP+VD + VG++ D A+A Sbjct: 419 INHLPIVDEHGKLVGIITSWDIAKA 443
>Y1004_METJA (Q58410) Hypothetical protein MJ1004| Length = 214 Score = 34.3 bits (77), Expect = 0.32 Identities = 16/45 (35%), Positives = 28/45 (62%) Frame = -3 Query: 519 KIADVMTSPAITLSCDKTVTDAAALMLKKKIHRLPIVNQDNQVIG 385 K+ D+M + D+TV DA L+ KKK PIV+++++++G Sbjct: 2 KVRDLMDKNFAKIYVDETVEDAINLLKKKKRFSAPIVDKEDRLVG 46
>IMDH_TRIFO (P50097) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP| dehydrogenase) (IMPDH) (IMPD) Length = 503 Score = 32.7 bits (73), Expect = 0.92 Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 2/48 (4%) Frame = -3 Query: 528 SRTKIADVMT--SPAITLSCDKTVTDAAALMLKKKIHRLPIVNQDNQV 391 + TK++D+MT S +T D +++A ++ +KK++ LPI++ D + Sbjct: 159 TETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHL 206
>AAKG2_PONPY (Q5R4S0) 5'-AMP-activated protein kinase, gamma-2 subunit (AMPK| gamma-2 chain) (AMPK gamma2) Length = 524 Score = 32.7 bits (73), Expect = 0.92 Identities = 12/30 (40%), Positives = 21/30 (70%) Frame = -3 Query: 495 PAITLSCDKTVTDAAALMLKKKIHRLPIVN 406 P + +S D ++ DA ++K KIHRLP+++ Sbjct: 315 PLVNISPDASLLDAVYSLIKNKIHRLPVID 344
>OPUBA_BACSU (Q45460) Choline transport ATP-binding protein opuBA| Length = 381 Score = 32.7 bits (73), Expect = 0.92 Identities = 12/45 (26%), Positives = 29/45 (64%) Frame = -3 Query: 519 KIADVMTSPAITLSCDKTVTDAAALMLKKKIHRLPIVNQDNQVIG 385 ++ +M + +T++ DKT+++A LM ++++ L +VN + + G Sbjct: 251 RVDQIMNTQPVTITADKTLSEAIQLMRQERVDSLLVVNDERVLQG 295
>AAKG2_MOUSE (Q91WG5) 5'-AMP-activated protein kinase, gamma-2 subunit (AMPK| gamma-2 chain) (AMPK gamma2) Length = 566 Score = 32.3 bits (72), Expect = 1.2 Identities = 12/30 (40%), Positives = 21/30 (70%) Frame = -3 Query: 495 PAITLSCDKTVTDAAALMLKKKIHRLPIVN 406 P + +S D ++ DA ++K KIHRLP+++ Sbjct: 357 PLVNISPDASLFDAVYSLIKNKIHRLPVID 386
>AAKG2_HUMAN (Q9UGJ0) 5'-AMP-activated protein kinase, gamma-2 subunit (AMPK| gamma-2 chain) (AMPK gamma2) (H91620p) Length = 569 Score = 32.3 bits (72), Expect = 1.2 Identities = 12/30 (40%), Positives = 21/30 (70%) Frame = -3 Query: 495 PAITLSCDKTVTDAAALMLKKKIHRLPIVN 406 P + +S D ++ DA ++K KIHRLP+++ Sbjct: 360 PLVNISPDASLFDAVYSLIKNKIHRLPVID 389
>Y1404_METJA (Q58799) Hypothetical protein MJ1404| Length = 421 Score = 31.6 bits (70), Expect = 2.0 Identities = 15/46 (32%), Positives = 26/46 (56%) Frame = -3 Query: 522 TKIADVMTSPAITLSCDKTVTDAAALMLKKKIHRLPIVNQDNQVIG 385 TK+ +MT IT++ + ++ A ALM I RL +V+ + +G Sbjct: 133 TKVTKIMTRNVITINENDSIGKARALMRDNNIGRLVVVDDEGNPVG 178
>IMDH_DROME (Q07152) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP| dehydrogenase) (IMPDH) (IMPD) (Protein raspberry) Length = 537 Score = 31.6 bits (70), Expect = 2.0 Identities = 15/43 (34%), Positives = 26/43 (60%) Frame = -3 Query: 516 IADVMTSPAITLSCDKTVTDAAALMLKKKIHRLPIVNQDNQVI 388 +AD+MT+ +T + A A++ K K +LPIVNQ +++ Sbjct: 196 LADIMTTELVTAPNGINLPTANAILEKSKKGKLPIVNQAGELV 238
>YBP3_ACIAM (P32987) Hypothetical 17.7 kDa protein in bps2 3'region (ORF3)| Length = 164 Score = 26.6 bits (57), Expect(2) = 2.5 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -3 Query: 504 MTSPAITLSCDKTVTDAAALMLKKKIHRLPIVNQDNQVIG 385 MT ++ D VTDA +ML LPI+ + ++ G Sbjct: 72 MTKDVKGVTEDTEVTDALDIMLNNGFRHLPIIKSNGKLYG 111 Score = 23.5 bits (49), Expect(2) = 2.5 Identities = 9/26 (34%), Positives = 16/26 (61%) Frame = -2 Query: 613 VSGLPVVDSARRCVGVVVKSDRARAS 536 + L V+DS R VG++ + D +A+ Sbjct: 34 LGSLVVIDSQNRVVGIITERDIVKAA 59
>GUTQ_ECOLI (P17115) Protein gutQ| Length = 321 Score = 31.2 bits (69), Expect = 2.7 Identities = 13/46 (28%), Positives = 25/46 (54%) Frame = -3 Query: 522 TKIADVMTSPAITLSCDKTVTDAAALMLKKKIHRLPIVNQDNQVIG 385 T + + MT TL DA +++K+KI P+V+++ ++ G Sbjct: 263 TPVNEAMTVGGTTLQSQSRAIDAKEILMKRKITAAPVVDENGKLTG 308
>AAKG1_RAT (P80385) 5'-AMP-activated protein kinase, gamma-1 subunit (AMPK| gamma-1 chain) (AMPKg) Length = 330 Score = 30.8 bits (68), Expect = 3.5 Identities = 10/33 (30%), Positives = 24/33 (72%) Frame = -3 Query: 495 PAITLSCDKTVTDAAALMLKKKIHRLPIVNQDN 397 P + +S + ++ DA + +++ KIHRLP+++ ++ Sbjct: 127 PLVCISPNASLFDAVSSLIRNKIHRLPVIDPES 159
>AAKG1_PIG (Q09138) 5'-AMP-activated protein kinase, gamma-1 subunit (AMPK| gamma-1 chain) (AMPKg) (38 kDa subunit) Length = 330 Score = 30.8 bits (68), Expect = 3.5 Identities = 10/33 (30%), Positives = 24/33 (72%) Frame = -3 Query: 495 PAITLSCDKTVTDAAALMLKKKIHRLPIVNQDN 397 P + +S + ++ DA + +++ KIHRLP+++ ++ Sbjct: 128 PLVCISPNASLFDAVSSLIRNKIHRLPVIDPES 160
>AAKG1_MOUSE (O54950) 5'-AMP-activated protein kinase, gamma-1 subunit (AMPK| gamma-1 chain) (AMPKg) Length = 330 Score = 30.8 bits (68), Expect = 3.5 Identities = 10/33 (30%), Positives = 24/33 (72%) Frame = -3 Query: 495 PAITLSCDKTVTDAAALMLKKKIHRLPIVNQDN 397 P + +S + ++ DA + +++ KIHRLP+++ ++ Sbjct: 127 PLVCISPNASLFDAVSSLIRNKIHRLPVIDPES 159
>AAKG1_BOVIN (P58108) 5'-AMP-activated protein kinase, gamma-1 subunit (AMPK| gamma-1 chain) (AMPKg) Length = 330 Score = 30.8 bits (68), Expect = 3.5 Identities = 10/33 (30%), Positives = 24/33 (72%) Frame = -3 Query: 495 PAITLSCDKTVTDAAALMLKKKIHRLPIVNQDN 397 P + +S + ++ DA + +++ KIHRLP+++ ++ Sbjct: 128 PLVCISPNASLFDAVSSLIRNKIHRLPVIDPES 160
>AAKG1_HUMAN (P54619) 5'-AMP-activated protein kinase, gamma-1 subunit (AMPK| gamma-1 chain) (AMPKg) Length = 331 Score = 30.8 bits (68), Expect = 3.5 Identities = 10/33 (30%), Positives = 24/33 (72%) Frame = -3 Query: 495 PAITLSCDKTVTDAAALMLKKKIHRLPIVNQDN 397 P + +S + ++ DA + +++ KIHRLP+++ ++ Sbjct: 128 PLVCISPNASLFDAVSSLIRNKIHRLPVIDPES 160
>Y1225_METJA (Q58622) Hypothetical protein MJ1225| Length = 280 Score = 30.4 bits (67), Expect = 4.6 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = -3 Query: 516 IADVMTSPAITLSCDKTVTDAAALMLKKKIHRLPIVNQDNQVI 388 + ++M ITL + + +A L K + PIVN +NQ+I Sbjct: 86 VREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLI 128
>YR33_THEPE (P15889) Hypothetical 33.4 kDa protein in ribosomal RNA operon| Length = 300 Score = 29.6 bits (65), Expect = 7.8 Identities = 14/54 (25%), Positives = 31/54 (57%) Frame = -3 Query: 567 SSSRAIARGLHMGSRTKIADVMTSPAITLSCDKTVTDAAALMLKKKIHRLPIVN 406 S I+ ++ + K+ ++MTS + LS ++ + +M +++I RLP+V+ Sbjct: 131 SERHVISLLANVETHVKVKEIMTSEVVYLSPMDSLFEGMRVMSERRIRRLPLVS 184 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,420,841 Number of Sequences: 219361 Number of extensions: 1751774 Number of successful extensions: 4261 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 4088 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4258 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
