Clone Name | rbasd21e06 |
---|---|
Clone Library Name | barley_pub |
>gb|BC029142.1| Homo sapiens, clone IMAGE:5196881, mRNA Length = 1061 Score = 420 bits (212), Expect = e-114 Identities = 240/248 (96%), Gaps = 1/248 (0%) Strand = Plus / Minus Query: 385 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 444 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 643 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcctgagcat 584 Query: 445 cagagctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcat 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 583 cagagctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcat 524 Query: 505 cacatctgcaatcttcgtccttgaccccatgtgaagccctcgcgcgatcgctcttgacga 564 ||||||||||||||||||| ||| |||||||||||||||| || ||||||||||||||| Sbjct: 523 cacatctgcaatcttcgtctttg-gcccatgtgaagccctcacgtgatcgctcttgacga 465 Query: 565 cgaccccgacacatcggcgggcgctgtcgacaaccgggaggcctgacacgagctggaagt 624 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 464 cgaccccgacacatcggcgggcactgtcgacaaccgggaggcctgacacgagctggaagt 405 Query: 625 gtccttca 632 | |||||| Sbjct: 404 ggccttca 397 Score = 383 bits (193), Expect = e-103 Identities = 241/253 (95%), Gaps = 3/253 (1%) Strand = Plus / Minus Query: 1 acagtacagtacagaacagaatcttcctggcgtgcttctttacaaggaaaagctctccta 60 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 891 acagtacagtacagagcagaagcttcctggcgtgcttctttacaaggaaaagctctccta 832 Query: 61 aatgctcccaggcatattttt-gcgatacaggctacaaacacttttacat-ctataggat 118 ||||||||||||| ||||||| ||||||||| || |||||||||||||| ||||||||| Sbjct: 831 aatgctcccaggcttattttttgcgatacagactgcaaacacttttacagactataggat 772 Query: 119 ctgcctgctactcaaaagtaccgcggacacacatatttacagatccacaagtaccgggca 178 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 771 ctgcctgctactcaaa-gtaccgcggacacacatatttacagatccacaagtaccgggca 713 Query: 179 tgggctcctgcgcctctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcg 238 ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 712 tggactcctgcatctctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcg 653 Query: 239 ggtaactatacct 251 ||||||||||||| Sbjct: 652 ggtaactatacct 640
>gb|AF498268.1| Haynaldia villosa clone kong28 mRNA Length = 1474 Score = 404 bits (204), Expect = e-109 Identities = 238/248 (95%), Gaps = 1/248 (0%) Strand = Plus / Plus Query: 385 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 265 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 324 Query: 445 cagagctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcat 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 325 cagagctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcat 384 Query: 505 cacatctgcaatcttcgtccttgaccccatgtgaagccctcgcgcgatcgctcttgacga 564 ||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| |||| Sbjct: 385 cacatctgcaatcttcgtctttg-gcccatgtgaagccctcgcgcaatcgctcttcacga 443 Query: 565 cgaccccgacacatcggcgggcgctgtcgacaaccgggaggcctgacacgagctggaagt 624 |||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||| Sbjct: 444 cgaccccgacgcatctgcgagcgctgtcgacaaccgggaggcctgacacgagctgaaagt 503 Query: 625 gtccttca 632 | |||||| Sbjct: 504 ggccttca 511 Score = 333 bits (168), Expect = 4e-88 Identities = 222/236 (94%), Gaps = 3/236 (1%) Strand = Plus / Plus Query: 17 cagaatcttcctggcgtgcttctttacaaggaaaagctctcctaaatgctcccaggcata 76 ||||| ||||| |||||||||||||||||||||||||||||||||| | |||||||| || Sbjct: 35 cagaagcttccgggcgtgcttctttacaaggaaaagctctcctaaaagttcccaggctta 94 Query: 77 tttttgcgatacaggctacaaacacttttacat-ctataggatctgcctgctactcaaaa 135 ||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||| Sbjct: 95 tttttgcgatacaggctacaa-cacttttacagactatag-atctgcctgctactcaaaa 152 Query: 136 gtaccgcggacacacatatttacagatccacaagtaccgggcatgggctcctgcgcctct 195 | |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct: 153 gcaccgcggacacacatatttacagatccacaagtaccgggcatggactcctgcatctct 212 Query: 196 aaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 251 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 213 aaaacttcagcatggcctccaacgcgcgaagaacgtcgtcgcgggtaactatacct 268
>ref|XM_507550.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 916 Score = 143 bits (72), Expect = 8e-31 Identities = 154/180 (85%), Gaps = 1/180 (0%) Strand = Plus / Minus Query: 385 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 444 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 635 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 576 Query: 445 cagagctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcat 504 ||||||||| ||||| | |||||||| || ||| ||| ||||| |||||||| ||||| Sbjct: 575 cagagctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcat 516 Query: 505 cacatctgcaatcttcgtccttgaccccatgtgaagccctcgcgcgatcgctcttgacga 564 ||| ||||||||||||||| |||| |||||| |||||||| || || || |||||||||| Sbjct: 515 cacttctgcaatcttcgtctttga-cccatgagaagccctggcccggtcactcttgacga 457 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 193 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 251 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 632
>ref|XM_507549.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 1002 Score = 143 bits (72), Expect = 8e-31 Identities = 154/180 (85%), Gaps = 1/180 (0%) Strand = Plus / Minus Query: 385 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 444 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 635 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 576 Query: 445 cagagctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcat 504 ||||||||| ||||| | |||||||| || ||| ||| ||||| |||||||| ||||| Sbjct: 575 cagagctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcat 516 Query: 505 cacatctgcaatcttcgtccttgaccccatgtgaagccctcgcgcgatcgctcttgacga 564 ||| ||||||||||||||| |||| |||||| |||||||| || || || |||||||||| Sbjct: 515 cacttctgcaatcttcgtctttga-cccatgagaagccctggcccggtcactcttgacga 457 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 193 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 251 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 632
>ref|XM_507051.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 956 Score = 143 bits (72), Expect = 8e-31 Identities = 154/180 (85%), Gaps = 1/180 (0%) Strand = Plus / Minus Query: 385 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 444 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 641 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 582 Query: 445 cagagctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcat 504 ||||||||| ||||| | |||||||| || ||| ||| ||||| |||||||| ||||| Sbjct: 581 cagagctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcat 522 Query: 505 cacatctgcaatcttcgtccttgaccccatgtgaagccctcgcgcgatcgctcttgacga 564 ||| ||||||||||||||| |||| |||||| |||||||| || || || |||||||||| Sbjct: 521 cacttctgcaatcttcgtctttga-cccatgagaagccctggcccggtcactcttgacga 463 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 193 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 251 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 696 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 638
>ref|XM_468415.1| Oryza sativa (japonica cultivar-group), mRNA Length = 833 Score = 143 bits (72), Expect = 8e-31 Identities = 154/180 (85%), Gaps = 1/180 (0%) Strand = Plus / Minus Query: 385 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 444 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 627 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 568 Query: 445 cagagctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcat 504 ||||||||| ||||| | |||||||| || ||| ||| ||||| |||||||| ||||| Sbjct: 567 cagagctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcat 508 Query: 505 cacatctgcaatcttcgtccttgaccccatgtgaagccctcgcgcgatcgctcttgacga 564 ||| ||||||||||||||| |||| |||||| |||||||| || || || |||||||||| Sbjct: 507 cacttctgcaatcttcgtctttga-cccatgagaagccctggcccggtcactcttgacga 449 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 193 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 251 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 682 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 624
>gb|AY346465.1| Oryza sativa (indica cultivar-group) putative brown planthopper susceptibility protein Hd002A mRNA, complete cds Length = 1265 Score = 143 bits (72), Expect = 8e-31 Identities = 154/180 (85%), Gaps = 1/180 (0%) Strand = Plus / Minus Query: 385 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 444 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 1059 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 1000 Query: 445 cagagctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcat 504 ||||||||| ||||| | |||||||| || ||| ||| ||||| |||||||| ||||| Sbjct: 999 cagagctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcat 940 Query: 505 cacatctgcaatcttcgtccttgaccccatgtgaagccctcgcgcgatcgctcttgacga 564 ||| ||||||||||||||| |||| |||||| |||||||| || || || |||||||||| Sbjct: 939 cacttctgcaatcttcgtctttga-cccatgagaagccctggcccggtcactcttgacga 881 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 193 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 251 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 1114 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 1056
>dbj|AK104947.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G08, full insert sequence Length = 833 Score = 143 bits (72), Expect = 8e-31 Identities = 154/180 (85%), Gaps = 1/180 (0%) Strand = Plus / Minus Query: 385 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 444 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 627 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 568 Query: 445 cagagctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcat 504 ||||||||| ||||| | |||||||| || ||| ||| ||||| |||||||| ||||| Sbjct: 567 cagagctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcat 508 Query: 505 cacatctgcaatcttcgtccttgaccccatgtgaagccctcgcgcgatcgctcttgacga 564 ||| ||||||||||||||| |||| |||||| |||||||| || || || |||||||||| Sbjct: 507 cacttctgcaatcttcgtctttga-cccatgagaagccctggcccggtcactcttgacga 449 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 193 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 251 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 682 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 624
>dbj|AK104525.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H03, full insert sequence Length = 994 Score = 143 bits (72), Expect = 8e-31 Identities = 154/180 (85%), Gaps = 1/180 (0%) Strand = Plus / Minus Query: 385 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 444 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 627 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 568 Query: 445 cagagctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcat 504 ||||||||| ||||| | |||||||| || ||| ||| ||||| |||||||| ||||| Sbjct: 567 cagagctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcat 508 Query: 505 cacatctgcaatcttcgtccttgaccccatgtgaagccctcgcgcgatcgctcttgacga 564 ||| ||||||||||||||| |||| |||||| |||||||| || || || |||||||||| Sbjct: 507 cacttctgcaatcttcgtctttga-cccatgagaagccctggcccggtcactcttgacga 449 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 193 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 251 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 682 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 624
>dbj|AK104684.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-B10, full insert sequence Length = 916 Score = 143 bits (72), Expect = 8e-31 Identities = 154/180 (85%), Gaps = 1/180 (0%) Strand = Plus / Minus Query: 385 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 444 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 635 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 576 Query: 445 cagagctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcat 504 ||||||||| ||||| | |||||||| || ||| ||| ||||| |||||||| ||||| Sbjct: 575 cagagctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcat 516 Query: 505 cacatctgcaatcttcgtccttgaccccatgtgaagccctcgcgcgatcgctcttgacga 564 ||| ||||||||||||||| |||| |||||| |||||||| || || || |||||||||| Sbjct: 515 cacttctgcaatcttcgtctttga-cccatgagaagccctggcccggtcactcttgacga 457 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 193 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 251 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 632
>dbj|AK104103.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B08, full insert sequence Length = 1002 Score = 143 bits (72), Expect = 8e-31 Identities = 154/180 (85%), Gaps = 1/180 (0%) Strand = Plus / Minus Query: 385 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 444 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 635 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 576 Query: 445 cagagctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcat 504 ||||||||| ||||| | |||||||| || ||| ||| ||||| |||||||| ||||| Sbjct: 575 cagagctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcat 516 Query: 505 cacatctgcaatcttcgtccttgaccccatgtgaagccctcgcgcgatcgctcttgacga 564 ||| ||||||||||||||| |||| |||||| |||||||| || || || |||||||||| Sbjct: 515 cacttctgcaatcttcgtctttga-cccatgagaagccctggcccggtcactcttgacga 457 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 193 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 251 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 690 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 632
>dbj|AK071580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106O04, full insert sequence Length = 1514 Score = 143 bits (72), Expect = 8e-31 Identities = 154/180 (85%), Gaps = 1/180 (0%) Strand = Plus / Minus Query: 385 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 444 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 628 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 569 Query: 445 cagagctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcat 504 ||||||||| ||||| | |||||||| || ||| ||| ||||| |||||||| ||||| Sbjct: 568 cagagctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcat 509 Query: 505 cacatctgcaatcttcgtccttgaccccatgtgaagccctcgcgcgatcgctcttgacga 564 ||| ||||||||||||||| |||| |||||| |||||||| || || || |||||||||| Sbjct: 508 cacttctgcaatcttcgtctttga-cccatgagaagccctggcccggtcactcttgacga 450 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 193 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 251 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 683 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 625
>dbj|AK065134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P24, full insert sequence Length = 955 Score = 143 bits (72), Expect = 8e-31 Identities = 154/180 (85%), Gaps = 1/180 (0%) Strand = Plus / Minus Query: 385 acctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttgagcat 444 |||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| ||||| Sbjct: 640 acctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttctttagcat 581 Query: 445 cagagctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtcat 504 ||||||||| ||||| | |||||||| || ||| ||| ||||| |||||||| ||||| Sbjct: 580 cagagctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtcat 521 Query: 505 cacatctgcaatcttcgtccttgaccccatgtgaagccctcgcgcgatcgctcttgacga 564 ||| ||||||||||||||| |||| |||||| |||||||| || || || |||||||||| Sbjct: 520 cacttctgcaatcttcgtctttga-cccatgagaagccctggcccggtcactcttgacga 462 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 193 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 251 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 695 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 637
>gb|AY346466.1| Oryza sativa (indica cultivar-group) brown planthopper-induced resistance protein 1 (Bi1) mRNA, complete cds Length = 1098 Score = 129 bits (65), Expect = 1e-26 Identities = 154/181 (85%), Gaps = 2/181 (1%) Strand = Plus / Minus Query: 385 acctattacttgattgtcctggtttactatcggtaatctgtggatc-ttcttcttgagca 443 |||||| ||||| ||||||| ||||| || ||||||||||||||| |||||||| |||| Sbjct: 894 acctatcacttgtctgtcctgatttacaattggtaatctgtggatccttcttctttagca 835 Query: 444 tcagagctgcggcatcggtcactgttttatcgcatgatagcgtgattgctggagatgtca 503 |||||||||| ||||| | |||||||| || ||| ||| ||||| |||||||| |||| Sbjct: 834 tcagagctgccgcatccattactgttttgtcagatggtagagtgatggctggagaggtca 775 Query: 504 tcacatctgcaatcttcgtccttgaccccatgtgaagccctcgcgcgatcgctcttgacg 563 |||| ||||||||||||||| |||| |||||| |||||||| || || || ||||||||| Sbjct: 774 tcacttctgcaatcttcgtctttga-cccatgagaagccctggcccggtcactcttgacg 716 Query: 564 a 564 | Sbjct: 715 a 715 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 193 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 251 |||||| || ||||| ||| |||||| |||||||||||||| | ||||||||||||||| Sbjct: 949 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacct 891
>gb|AY112171.1| Zea mays CL11049_1 mRNA sequence Length = 803 Score = 101 bits (51), Expect = 3e-18 Identities = 175/215 (81%), Gaps = 1/215 (0%) Strand = Plus / Minus Query: 400 gtcctggtttactatcggtaatctgtggatcttcttcttgagcatcagagctgcggcatc 459 |||||||||||| | ||||||||||||||||||||||||||||| ||| | || ||||| Sbjct: 525 gtcctggtttacaactggtaatctgtggatcttcttcttgagcatgagaacagcagcatc 466 Query: 460 ggtcactgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatctt 519 |||| ||||| || | ||||| ||||| ||||||||||||||||| || | ||||| Sbjct: 465 catcacggttttgtcagacgatagtgtgatagctggagatgtcatcacttccgatatctt 406 Query: 520 cgtccttgaccccatgtgaagccctcgcgcgatcgctcttgacgacgaccccgacacatc 579 ||| |||| |||||| || || || || || ||| ||||||||| |||||||| |||| Sbjct: 405 cgt-cttggacccatgagaggctcttgcccggtcgttcttgacgatcaccccgacgcatc 347 Query: 580 ggcgggcgctgtcgacaaccgggaggcctgacacg 614 | || |||||||||| ||||| || || |||||| Sbjct: 346 tgaggccgctgtcgacgaccggaagccccgacacg 312 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 194 ctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacct 251 ||||| ||||| |||| | |||||| |||||||||| ||| ||||||||||||||||| Sbjct: 594 ctaaatcttcaacatgccttccaacacgcgaagaacatcagcgcgggtaactatacct 537
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 93.7 bits (47), Expect = 7e-16 Identities = 71/79 (89%) Strand = Plus / Minus Query: 381 actcacctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttga 440 |||||||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| | Sbjct: 35111794 actcacctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttcttta 35111735 Query: 441 gcatcagagctgcggcatc 459 ||||||||||||| ||||| Sbjct: 35111734 gcatcagagctgccgcatc 35111716 Score = 69.9 bits (35), Expect = 1e-08 Identities = 56/63 (88%) Strand = Plus / Minus Query: 193 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacctg 252 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 35111977 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacctg 35111918 Query: 253 tta 255 ||| Sbjct: 35111917 tta 35111915 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 464 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 523 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 35111621 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 35111562 Query: 524 cttgac 529 ||||| Sbjct: 35111561 tttgac 35111556
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 93.7 bits (47), Expect = 7e-16 Identities = 71/79 (89%) Strand = Plus / Minus Query: 381 actcacctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttga 440 |||||||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| | Sbjct: 7150 actcacctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttcttta 7091 Query: 441 gcatcagagctgcggcatc 459 ||||||||||||| ||||| Sbjct: 7090 gcatcagagctgccgcatc 7072 Score = 69.9 bits (35), Expect = 1e-08 Identities = 56/63 (88%) Strand = Plus / Minus Query: 193 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacctg 252 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 7333 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacctg 7274 Query: 253 tta 255 ||| Sbjct: 7273 tta 7271 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 464 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 523 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 6977 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 6918 Query: 524 cttgac 529 ||||| Sbjct: 6917 tttgac 6912
>dbj|AP004028.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1136_C12 Length = 103973 Score = 93.7 bits (47), Expect = 7e-16 Identities = 71/79 (89%) Strand = Plus / Minus Query: 381 actcacctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttga 440 |||||||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| | Sbjct: 84957 actcacctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttcttta 84898 Query: 441 gcatcagagctgcggcatc 459 ||||||||||||| ||||| Sbjct: 84897 gcatcagagctgccgcatc 84879 Score = 69.9 bits (35), Expect = 1e-08 Identities = 56/63 (88%) Strand = Plus / Minus Query: 193 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacctg 252 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 85140 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacctg 85081 Query: 253 tta 255 ||| Sbjct: 85080 tta 85078 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 464 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 523 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 84784 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 84725 Query: 524 cttgac 529 ||||| Sbjct: 84724 tttgac 84719
>dbj|AK068163.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135B04, full insert sequence Length = 4217 Score = 93.7 bits (47), Expect = 7e-16 Identities = 71/79 (89%) Strand = Plus / Plus Query: 381 actcacctattacttgattgtcctggtttactatcggtaatctgtggatcttcttcttga 440 |||||||||| ||||| ||||||| ||||| || ||||||||||||||||||||||| | Sbjct: 2396 actcacctatcacttgtctgtcctgatttacaattggtaatctgtggatcttcttcttta 2455 Query: 441 gcatcagagctgcggcatc 459 ||||||||||||| ||||| Sbjct: 2456 gcatcagagctgccgcatc 2474 Score = 69.9 bits (35), Expect = 1e-08 Identities = 56/63 (88%) Strand = Plus / Plus Query: 193 tctaaaacttcagcatggcctccaacgcgcgaagaacgtcatcgcgggtaactatacctg 252 |||||| || ||||| ||| |||||| |||||||||||||| | |||||||||||||||| Sbjct: 2213 tctaaacctccagcagggcttccaactcgcgaagaacgtcagcacgggtaactatacctg 2272 Query: 253 tta 255 ||| Sbjct: 2273 tta 2275 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 464 actgttttatcgcatgatagcgtgattgctggagatgtcatcacatctgcaatcttcgtc 523 |||||||| || ||| ||| ||||| |||||||| |||||||| ||||||||||||||| Sbjct: 2569 actgttttgtcagatggtagagtgatggctggagaggtcatcacttctgcaatcttcgtc 2628 Query: 524 cttgac 529 ||||| Sbjct: 2629 tttgac 2634
>gb|AC037492.5|AC037492 Homo sapiens chromosome 8, clone RP11-38H17, complete sequence Length = 168278 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 96 aaacacttttacatctatagga 117 |||||||||||||||||||||| Sbjct: 101167 aaacacttttacatctatagga 101188
>gb|AC005251.1| Homo sapiens BAC clone CTA-324D18 from 7, complete sequence Length = 92636 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 319 gatgatacagatctagtagtatata 343 |||||||||| |||||||||||||| Sbjct: 82511 gatgatacagttctagtagtatata 82487
>emb|CR391913.7| Zebrafish DNA sequence from clone DKEY-118P6 in linkage group 5, complete sequence Length = 190731 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 348 tcctttgctgctggttttgtc 368 ||||||||||||||||||||| Sbjct: 106864 tcctttgctgctggttttgtc 106884
>gb|AC108719.3| Homo sapiens 3 BAC RP11-247J22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 43088 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 344 aaagtcctttgctgctggttt 364 ||||||||||||||||||||| Sbjct: 22540 aaagtcctttgctgctggttt 22560
>emb|AL928727.8| Zebrafish DNA sequence from clone CH211-130P8 in linkage group 5, complete sequence Length = 172861 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 348 tcctttgctgctggttttgtc 368 ||||||||||||||||||||| Sbjct: 79138 tcctttgctgctggttttgtc 79118
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 576 catcggcgggcgctgtcgac 595 |||||||||||||||||||| Sbjct: 1917126 catcggcgggcgctgtcgac 1917145
>ref|XM_841417.1| Trypanosoma brucei TREU927 hypothetical protein (Tb927.1.4760) partial mRNA Length = 3087 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 tctgtggatcttcttcttga 440 |||||||||||||||||||| Sbjct: 1378 tctgtggatcttcttcttga 1397
>gb|AC018738.4| Homo sapiens BAC clone RP11-419H23 from 2, complete sequence Length = 178530 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 tcttcttgagcatcagagct 451 |||||||||||||||||||| Sbjct: 171536 tcttcttgagcatcagagct 171517
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 576 catcggcgggcgctgtcgac 595 |||||||||||||||||||| Sbjct: 75837 catcggcgggcgctgtcgac 75856
>gb|AC025577.15| Homo sapiens 12 BAC RP11-13C3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 154090 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 247 tacctgttagcattgtttagaata 270 |||||||||||||| ||||||||| Sbjct: 14923 tacctgttagcattctttagaata 14946
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 576 catcggcgggcgctgtcgac 595 |||||||||||||||||||| Sbjct: 2567233 catcggcgggcgctgtcgac 2567252
>gb|AF131950.1| Human papillomavirus candHPV85, complete genome Length = 7812 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 tttgcgatacaggctacaaa 98 |||||||||||||||||||| Sbjct: 3734 tttgcgatacaggctacaaa 3753
>gb|AC008750.9| Homo sapiens chromosome 19 clone CTD-2616J11, complete sequence Length = 143045 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 gctctcctaaatgctcccag 71 |||||||||||||||||||| Sbjct: 76812 gctctcctaaatgctcccag 76793
>gb|AE004451.1| Pseudomonas aeruginosa PAO1, section 12 of 529 of the complete genome Length = 10700 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 209 ggcctccaacgcgcgaagaacgtcatcg 236 ||||| ||| |||||||||||||||||| Sbjct: 2227 ggcctgcaaggcgcgaagaacgtcatcg 2200
>dbj|AP002347.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2514A21, complete sequence Length = 130977 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 acatatttacagatccacaa 168 |||||||||||||||||||| Sbjct: 119986 acatatttacagatccacaa 119967
>dbj|AP000790.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-736I10, complete sequence Length = 176944 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 acatatttacagatccacaa 168 |||||||||||||||||||| Sbjct: 30122 acatatttacagatccacaa 30103
>gb|AC009994.10| Homo sapiens chromosome 17, clone RP11-87N3, complete sequence Length = 188552 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 ttagcattgtttagaataat 272 |||||||||||||||||||| Sbjct: 65330 ttagcattgtttagaataat 65311 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,049,258 Number of Sequences: 3902068 Number of extensions: 5049258 Number of successful extensions: 85380 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85224 Number of HSP's gapped (non-prelim): 149 length of query: 632 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 609 effective length of database: 17,143,297,704 effective search space: 10440268301736 effective search space used: 10440268301736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)