Clone Name	rbasd21e04
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|AY108591.1| Zea mays PCO125156 mRNA sequence	240	4e-60
2	dbj|AK061903.1| Oryza sativa (japonica cultivar-group) cDNA clon...	224	2e-55
3	dbj|AK121333.1| Oryza sativa (japonica cultivar-group) cDNA clon...	224	2e-55
4	dbj|AK065547.1| Oryza sativa (japonica cultivar-group) cDNA clon...	224	2e-55
5	ref|XM_479479.1| Oryza sativa (japonica cultivar-group), mRNA	98	4e-17
6	gb|AY649841.1| Zea mays ASF/SF2-like pre-mRNA splicing factor SR...	98	4e-17
7	gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3	98	4e-17
8	gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome...	98	4e-17
9	dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...	98	4e-17
10	dbj|AK106176.1| Oryza sativa (japonica cultivar-group) cDNA clon...	98	4e-17
11	dbj|AK072839.1| Oryza sativa (japonica cultivar-group) cDNA clon...	98	4e-17
12	gb|DQ019639.1| Triticum aestivum alternative splicing regulator ...	76	1e-10
13	ref|NM_100783.3| Arabidopsis thaliana ATSRP30.1; RNA binding AT1...	56	1e-04
14	ref|NM_148447.2| Arabidopsis thaliana ATSRP30.1; RNA binding AT1...	56	1e-04
15	gb|DQ200373.1| Solanum tuberosum clone 059F05 pre-mRNA splicing ...	56	1e-04
16	gb|AY150486.1| Arabidopsis thaliana putative SF2/ASF splicing mo...	56	1e-04
17	gb|AY050912.1| Arabidopsis thaliana putative SF2/ASF splicing mo...	56	1e-04
18	emb|BX816682.1|CNS0AD6Q Arabidopsis thaliana Full-length cDNA Co...	56	1e-04
19	emb|BX815693.1|CNS0AAVQ Arabidopsis thaliana Full-length cDNA Co...	56	1e-04
20	gb|BT013695.1| Lycopersicon esculentum clone 132536R, mRNA sequence	54	5e-04
21	gb|BT013343.1| Lycopersicon esculentum clone 135171R, mRNA sequence	52	0.002
22	gb|BT012710.1| Lycopersicon esculentum clone 113590R, mRNA sequence	52	0.002
23	dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...	50	0.008
24	dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic D...	50	0.008
25	dbj|AP006269.3| Oryza sativa (japonica cultivar-group) genomic D...	50	0.008
26	dbj|AP006409.1| Lotus japonicus genomic DNA, chromosome 5, clone...	48	0.032
27	ref|NM_116476.3| Arabidopsis thaliana RNA binding / nucleic acid...	46	0.13
28	ref|NM_179206.1| Arabidopsis thaliana RNA binding / nucleic acid...	46	0.13
29	gb|AY056185.1| Arabidopsis thaliana At4g02430 mRNA sequence	46	0.13
30	emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, c...	46	0.13
31	gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sa...	46	0.13
32	emb|BX828050.1|CNS0A30C Arabidopsis thaliana Full-length cDNA Co...	46	0.13
33	emb|BX827158.1|CNS0A2S3 Arabidopsis thaliana Full-length cDNA Co...	46	0.13
34	gb|AF069298.1|T14P8 Arabidopsis thaliana BAC T14P8	46	0.13
35	dbj|AK118074.1| Arabidopsis thaliana At4g02430 mRNA for unknown ...	46	0.13
36	gb|AC146389.3| Pan troglodytes BAC clone RP43-143J12 from 7, com...	44	0.50
37	gb|AC145994.2| Pan troglodytes BAC clone RP43-13J21 from 7, comp...	44	0.50
38	ref|XM_962170.1| PREDICTED: Tribolium castaneum similar to CG698...	44	0.50
39	gb|AC083870.2|AC083870 Homo sapiens chromosome 7 clone RP11-248K...	44	0.50
40	emb|AL671913.10| Mouse DNA sequence from clone RP23-136P3 on chr...	44	0.50
41	gb|AC150654.2| Oryza sativa (japonica cultivar-group) chromosome...	42	2.0
42	gb|AC140724.4| Mus musculus chromosome 8, clone RP24-291N1, comp...	42	2.0
43	gb|AC109646.6| Oryza sativa (japonica cultivar-group) chromosome...	42	2.0
44	gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome...	42	2.0
45	emb|BX530033.6| Zebrafish DNA sequence from clone CH211-209F14 i...	42	2.0
46	emb|AL645907.9| Mouse DNA sequence from clone RP23-9N7 on chromo...	42	2.0
47	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	42	2.0
48	gb|AC107218.4| Homo sapiens BAC clone RP11-561A13 from 2, comple...	42	2.0
49	ref|XM_226742.3| PREDICTED: Rattus norvegicus baculoviral IAP re...	42	2.0
50	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	42	2.0
51	ref|XM_633915.1| Dictyostelium discoideum hypothetical protein (...	40	7.8
52	gb|AC100043.9| Mus musculus chromosome 3, clone RP23-32D13, comp...	40	7.8
53	gb|BC059733.1| Mus musculus protamine 1, mRNA (cDNA clone MGC:74...	40	7.8
54	gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge...	40	7.8
55	ref|XM_799269.1| Trypanosoma cruzi strain CL Brener hexose trans...	40	7.8
56	ref|XM_802916.1| Trypanosoma cruzi strain CL Brener hexose trans...	40	7.8
57	ref|XM_809728.1| Trypanosoma cruzi strain CL Brener hexose trans...	40	7.8
58	ref|XM_797240.1| Trypanosoma cruzi strain CL Brener glucose tran...	40	7.8
59	gb|AC136288.23| Medicago truncatula clone mth2-13o7, complete se...	40	7.8
60	emb|Z46939.1|BTPRMTNP2 R.norvegicus PRM1, PRM2, PRM3 and TNP2 genes	40	7.8
61	gb|AC119566.11| Homo sapiens 12 BAC RP11-41H6 (Roswell Park Canc...	40	7.8
62	gb|AC096639.2| Homo sapiens chromosome 1 clone RP11-323I1, compl...	40	7.8
63	gb|AC134522.9| Medicago truncatula clone mth2-12g4, complete seq...	40	7.8
64	gb|AC106727.5| Homo sapiens 3q BAC RP11-534K3 (Roswell Park Canc...	40	7.8
65	gb|AC099054.2| Homo sapiens chromosome 3 clone RP11-489C3, compl...	40	7.8
66	gb|AC023538.7| Homo sapiens chromosome 8, clone RP11-510I21, com...	40	7.8
67	gb|AC080009.13| Homo sapiens 3q BAC RP11-460M17 (Roswell Park Ca...	40	7.8
68	gb|AC025159.28| Homo sapiens 12 BAC RP11-1082K22 (Roswell Park C...	40	7.8
69	gb|DP000051.1| Carollia perspicillata target 126 genomic scaffold	40	7.8
70	gb|U58746.1| Caenorhabditis elegans cosmid R05G6, complete sequence	40	7.8
71	ref|NM_068816.3| Caenorhabditis elegans R05G6.10 (R05G6.10) mRNA...	40	7.8
72	dbj|AK018980.1| Mus musculus adult male testis cDNA, RIKEN full-...	40	7.8
73	dbj|AK007068.1| Mus musculus adult male testis cDNA, RIKEN full-...	40	7.8
74	gb|AC024942.18|AC024942 Homo sapiens 12 BAC RP11-1115M13 (Roswel...	40	7.8
75	gb|AC155722.9| Mus musculus 6 BAC RP24-204J8 (Roswell Park Cance...	40	7.8
76	gb|AC073288.27| Homo sapiens 3 BAC RP11-543D10 (Roswell Park Can...	40	7.8
77	gb|AC073573.27| Homo sapiens 12 BAC RP11-1136G11 (Roswell Park C...	40	7.8
78	gb|AC093927.3| Homo sapiens chromosome 3 clone RP11-81I24, compl...	40	7.8
79	dbj|BS000062.1| Pan troglodytes chromosome 22 clone:PTB-045C17, ...	40	7.8
80	gb|AY107576.1| Zea mays PCO119766 mRNA sequence	40	7.8
81	emb|CT573504.2| Medicago truncatula chromosome 5 clone mth2-178o...	40	7.8
82	dbj|AP001679.1| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	7.8
83	gb|AC109163.16| Mus musculus chromosome 8, clone RP24-174F12, co...	40	7.8
84	gb|AC153592.3| Mus musculus 6 BAC RP23-20C15 (Roswell Park Cance...	40	7.8
85	ref|NM_013637.4| Mus musculus protamine 1 (Prm1), mRNA	40	7.8
86	ref|NM_001002850.1| Rattus norvegicus protamine 1 (mapped) (Prm1...	40	7.8
87	emb|CT033765.2| Medicago truncatula chromosome 5 clone mth2-105d...	40	7.8
88	emb|CT010583.8| Mouse DNA sequence from clone RP23-203B24 on chr...	40	7.8
89	emb|X14003.1|MMPROT1R Mouse protamine 1 mRNA	40	7.8
90	emb|X07625.1|MMPROT1 Mouse protamine 1 gene	40	7.8
91	gb|M83729.1|RATEXONS Rat exons 1-2	40	7.8
92	emb|Z47352.1|MMPRMGNS M.musculus PRM1, PRM2, PRM3 and TNP1 genes	40	7.8
93	gb|AC121107.19| Mus musculus chromosome 1, clone RP24-240P15, co...	40	7.8
94	gb|DQ082992.1| Mus musculus protamin 1 antisense RNA (Prm1) gene...	40	7.8
95	gb|DQ072382.1| Mus musculus A-Prm(1-2)-c antisense RNA, complete...	40	7.8
96	gb|DQ072381.1| Mus musculus A-Prm(1-2)-b antisense RNA, complete...	40	7.8
97	gb|DQ072380.1| Mus musculus A-Prm(1-2)-a antisense RNA, complete...	40	7.8
98	gb|M27500.1|MUSPROT Mus musculus protamine mRNA, complete cds	40	7.8
99	gb|K02926.1|MUSPRO1S Mouse protamine 1 mRNA, complete cds	40	7.8
100	gb|U05588.1|TCU05588 Trypanosoma cruzi CL hexose transporter gen...	40	7.8
101	dbj|AP001251.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21...	40	7.8

---

>gb|AY108591.1| Zea mays PCO125156 mRNA sequence
          Length = 1255

 Score =  240 bits (121), Expect = 4e-60
 Identities = 270/319 (84%), Gaps = 3/319 (0%)
 Strand = Plus / Minus

                                                                       
Query: 249 caccgtttgctggagaagcaattggggatttggatcttgctggtgatcttgacggaaaac 308
           |||| |||||||||||| || | || ||||| |||||||||||||||||||| ||| |||
Sbjct: 906 caccatttgctggagaaacattaggagatttcgatcttgctggtgatcttgatggagaac 847

                                                                       
Query: 309 gtcctttcgatgctgaccgagaacgggaagaaagagaccttgatctggacctagatgctg 368
           ||||||| ||||  ||||  ||||| ||||||| ||| ||||| | ||| ||||||| ||
Sbjct: 846 gtccttttgatggggaccttgaacgagaagaaacagatcttgaccgggatctagatgatg 787

                                                                       
Query: 369 a---gcgagccctgggagatttacttgggctcctgcttttgctgcggctacgacttgggc 425
           |   ||||| |||||| |||||||| || |||||||||||||||   |||||||||||||
Sbjct: 786 aacggcgagtcctgggtgatttactcggactcctgcttttgctgtaactacgacttgggc 727

                                                                       
Query: 426 tccggctacgtgagtaggagcgcccacgtttgccatcgtattccttcacccttatataac 485
           | |||||||||||||||||||| ||||||||||| |  ||||||||||||||||||||  
Sbjct: 726 ttcggctacgtgagtaggagcgaccacgtttgccgttatattccttcacccttatatagg 667

                                                                       
Query: 486 ctttagaaaatgcattcttaaattcagtgtcatccagtttctttatagcatatttcatat 545
           ||     ||| || ||| | |||||||| |||||||| ||||||||||||||||||||||
Sbjct: 666 ctcgcccaaaggcgttcctgaattcagtatcatccagcttctttatagcatatttcatat 607

                              
Query: 546 catcatagtttgtgtagtc 564
           ||||||| |||||||||||
Sbjct: 606 catcataatttgtgtagtc 588



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 176 tcaggtgaccgtgaacgagatgggctcctgcttggactgtgcttctttgggcttgc 231
           ||||| || ||||| | ||||||||||||| |||| || |||||||| ||||||||
Sbjct: 967 tcaggagagcgtgagccagatgggctcctgtttgggctctgcttcttggggcttgc 912

---

>dbj|AK061903.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-H07, full
           insert sequence
          Length = 1238

 Score =  224 bits (113), Expect = 2e-55
 Identities = 167/185 (90%)
 Strand = Plus / Minus

                                                                       
Query: 380 ggagatttacttgggctcctgcttttgctgcggctacgacttgggctccggctacgtgag 439
           |||||||||||| | |||||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 731 ggagatttacttagactcctgcttttgcttcggctacgacttgggcttcggctacgtgaa 672

                                                                       
Query: 440 taggagcgcccacgtttgccatcgtattccttcacccttatataacctttagaaaatgca 499
           ||||||||  | || |||||||| ||||||||||||||||| | |||||||||||| |||
Sbjct: 671 taggagcgggcgcgcttgccatcatattccttcacccttatgtgacctttagaaaaggca 612

                                                                       
Query: 500 ttcttaaattcagtgtcatccagtttctttatagcatatttcatatcatcatagtttgtg 559
           ||| | |||||| ||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 611 ttcctgaattcactgtcatcaagtttctttatagcatatttcatgtcatcatagtttgtg 552

                
Query: 560 tagtc 564
           |||||
Sbjct: 551 tagtc 547



 Score =  121 bits (61), Expect = 3e-24
 Identities = 94/105 (89%)
 Strand = Plus / Minus

                                                                       
Query: 249 caccgtttgctggagaagcaattggggatttggatcttgctggtgatcttgacggaaaac 308
           |||| ||||| ||||||||| |||| |||||||||||||||||||||||||| ||| | |
Sbjct: 871 caccatttgcaggagaagcatttggagatttggatcttgctggtgatcttgatggagagc 812

                                                        
Query: 309 gtcctttcgatgctgaccgagaacgggaagaaagagaccttgatc 353
           | ||||| ||||||||||| ||||||||||||| |||||||||||
Sbjct: 811 gcccttttgatgctgaccgtgaacgggaagaaacagaccttgatc 767



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                 
Query: 157 cttctattcagatttcacttcaggtgaccgtgaacgagatgggctcctgcttgg 210
           |||||||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct: 951 cttctattcagatttcgcatcaggagaccgtgaacgagatgggctcctgcttgg 898

---

>dbj|AK121333.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119J07, full
           insert sequence
          Length = 3430

 Score =  224 bits (113), Expect = 2e-55
 Identities = 167/185 (90%)
 Strand = Plus / Minus

                                                                       
Query: 380 ggagatttacttgggctcctgcttttgctgcggctacgacttgggctccggctacgtgag 439
           |||||||||||| | |||||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 761 ggagatttacttagactcctgcttttgcttcggctacgacttgggcttcggctacgtgaa 702

                                                                       
Query: 440 taggagcgcccacgtttgccatcgtattccttcacccttatataacctttagaaaatgca 499
           ||||||||  | || |||||||| ||||||||||||||||| | |||||||||||| |||
Sbjct: 701 taggagcgggcgcgcttgccatcatattccttcacccttatgtgacctttagaaaaggca 642

                                                                       
Query: 500 ttcttaaattcagtgtcatccagtttctttatagcatatttcatatcatcatagtttgtg 559
           ||| | |||||| ||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 641 ttcctgaattcactgtcatcaagtttctttatagcatatttcatgtcatcatagtttgtg 582

                
Query: 560 tagtc 564
           |||||
Sbjct: 581 tagtc 577



 Score =  121 bits (61), Expect = 3e-24
 Identities = 94/105 (89%)
 Strand = Plus / Minus

                                                                       
Query: 249 caccgtttgctggagaagcaattggggatttggatcttgctggtgatcttgacggaaaac 308
           |||| ||||| ||||||||| |||| |||||||||||||||||||||||||| ||| | |
Sbjct: 901 caccatttgcaggagaagcatttggagatttggatcttgctggtgatcttgatggagagc 842

                                                        
Query: 309 gtcctttcgatgctgaccgagaacgggaagaaagagaccttgatc 353
           | ||||| ||||||||||| ||||||||||||| |||||||||||
Sbjct: 841 gcccttttgatgctgaccgtgaacgggaagaaacagaccttgatc 797



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                 
Query: 157 cttctattcagatttcacttcaggtgaccgtgaacgagatgggctcctgcttgg 210
           |||||||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct: 981 cttctattcagatttcgcatcaggagaccgtgaacgagatgggctcctgcttgg 928

---

>dbj|AK065547.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034E09, full
           insert sequence
          Length = 1501

 Score =  224 bits (113), Expect = 2e-55
 Identities = 167/185 (90%)
 Strand = Plus / Minus

                                                                       
Query: 380 ggagatttacttgggctcctgcttttgctgcggctacgacttgggctccggctacgtgag 439
           |||||||||||| | |||||||||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 796 ggagatttacttagactcctgcttttgcttcggctacgacttgggcttcggctacgtgaa 737

                                                                       
Query: 440 taggagcgcccacgtttgccatcgtattccttcacccttatataacctttagaaaatgca 499
           ||||||||  | || |||||||| ||||||||||||||||| | |||||||||||| |||
Sbjct: 736 taggagcgggcgcgcttgccatcatattccttcacccttatgtgacctttagaaaaggca 677

                                                                       
Query: 500 ttcttaaattcagtgtcatccagtttctttatagcatatttcatatcatcatagtttgtg 559
           ||| | |||||| ||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 676 ttcctgaattcactgtcatcaagtttctttatagcatatttcatgtcatcatagtttgtg 617

                
Query: 560 tagtc 564
           |||||
Sbjct: 616 tagtc 612



 Score = 83.8 bits (42), Expect = 6e-13
 Identities = 51/54 (94%)
 Strand = Plus / Minus

                                                                  
Query: 157  cttctattcagatttcacttcaggtgaccgtgaacgagatgggctcctgcttgg 210
            |||||||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct: 1233 cttctattcagatttcgcatcaggagaccgtgaacgagatgggctcctgcttgg 1180



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                             
Query: 249  caccgtttgctggagaagcaattggggatttggatcttgctggtgatct 297
            |||| ||||| ||||||||| |||| |||||||||||||||||||||||
Sbjct: 1153 caccatttgcaggagaagcatttggagatttggatcttgctggtgatct 1105



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                      
Query: 311 cctttcgatgctgaccgagaacgggaagaaagagaccttgatc 353
           ||||| ||||||||||| ||||||||||||| |||||||||||
Sbjct: 874 ccttttgatgctgaccgtgaacgggaagaaacagaccttgatc 832

---

>ref|XM_479479.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1089

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 124/149 (83%)
 Strand = Plus / Minus

                                                                       
Query: 416 cgacttgggctccggctacgtgagtaggagcgcccacgtttgccatcgtattccttcacc 475
           |||||| |||| ||||| |||||||| || || |  || || ||||| || |||||||||
Sbjct: 797 cgacttcggcttcggcttcgtgagtatgaacggctgcgctttccatcatactccttcacc 738

                                                                       
Query: 476 cttatataacctttagaaaatgcattcttaaattcagtgtcatccagtttctttatagca 535
           ||||||||  | || || || ||||||||||||||||  ||||| |||||| | ||||||
Sbjct: 737 cttatataggcctttgagaaggcattcttaaattcagaatcatcaagtttcctgatagca 678

                                        
Query: 536 tatttcatatcatcatagtttgtgtagtc 564
           || ||||| ||||||||||||||||||||
Sbjct: 677 tacttcatgtcatcatagtttgtgtagtc 649



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 281 gatcttgctggtgatcttga 300
           ||||||||||||||||||||
Sbjct: 950 gatcttgctggtgatcttga 931

---

>gb|AY649841.1| Zea mays ASF/SF2-like pre-mRNA splicing factor SRP32 (srp32) gene,
            complete cds, alternatively spliced
          Length = 4735

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 73/81 (90%)
 Strand = Plus / Minus

                                                                        
Query: 395  ctcctgcttttgctgcggctacgacttgggctccggctacgtgagtaggagcgcccacgt 454
            |||||||||||||||   |||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 3068 ctcctgcttttgctgtaactacgacttgggcttcggctacgtgagtaggagcgaccacgt 3009

                                 
Query: 455  ttgccatcgtattccttcacc 475
            ||||| |  ||||||||||||
Sbjct: 3008 ttgccgttatattccttcacc 2988



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 532  agcatatttcatatcatcatagtttgtgtagtc 564
            ||||||||||||||||||||| |||||||||||
Sbjct: 2623 agcatatttcatatcatcataatttgtgtagtc 2591



 Score = 48.1 bits (24), Expect = 0.032
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                    
Query: 176  tcaggtgaccgtgaacgagatgggctcctgcttggactgtgcttctttgggcttgc 231
            ||||| || ||||| | ||||||||||||| |||| || |||||||| ||||||||
Sbjct: 4408 tcaggagagcgtgagccagatgggctcctgtttgggctctgcttcttggggcttgc 4353

---

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 73/81 (90%)
 Strand = Plus / Minus

                                                                            
Query: 395      ctcctgcttttgctgcggctacgacttgggctccggctacgtgagtaggagcgcccacgt 454
                |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||  | || 
Sbjct: 12791915 ctcctgcttttgcttcggctacgacttgggcttcggctacgtgaataggagcgggcgcgc 12791856

                                     
Query: 455      ttgccatcgtattccttcacc 475
                |||||||| ||||||||||||
Sbjct: 12791855 ttgccatcatattccttcacc 12791835



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                   
Query: 176      tcaggtgaccgtgaacgagatgggctcctgcttgg 210
                ||||| |||||||||||||||||||||||||||||
Sbjct: 12793359 tcaggagaccgtgaacgagatgggctcctgcttgg 12793325



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                           
Query: 311      cctttcgatgctgaccgagaacgggaagaaagagaccttgatc 353
                ||||| ||||||||||| ||||||||||||| |||||||||||
Sbjct: 12792081 ccttttgatgctgaccgtgaacgggaagaaacagaccttgatc 12792039



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                           
Query: 473      acccttatataacctttagaaaatgcattcttaaattcagtgtcatccagtttctttat 531
                |||||||| | |||||||||||| |||||| | |||||| ||||||| |||||||||||
Sbjct: 12791754 acccttatgtgacctttagaaaaggcattcctgaattcactgtcatcaagtttctttat 12791696



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                                 
Query: 532      agcatatttcatatcatcatagtttgtgtagtc 564
                |||||||||||| ||||||||||||||||||||
Sbjct: 12791479 agcatatttcatgtcatcatagtttgtgtagtc 12791447



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                    
Query: 262      agaagcaattggggatttggatcttgctggtgatct 297
                ||||||| |||| |||||||||||||||||||||||
Sbjct: 12793193 agaagcatttggagatttggatcttgctggtgatct 12793158

---

>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06,
             complete sequence
          Length = 132243

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 73/81 (90%)
 Strand = Plus / Minus

                                                                         
Query: 395   ctcctgcttttgctgcggctacgacttgggctccggctacgtgagtaggagcgcccacgt 454
             |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||  | || 
Sbjct: 30131 ctcctgcttttgcttcggctacgacttgggcttcggctacgtgaataggagcgggcgcgc 30072

                                  
Query: 455   ttgccatcgtattccttcacc 475
             |||||||| ||||||||||||
Sbjct: 30071 ttgccatcatattccttcacc 30051



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                
Query: 176   tcaggtgaccgtgaacgagatgggctcctgcttgg 210
             ||||| |||||||||||||||||||||||||||||
Sbjct: 31575 tcaggagaccgtgaacgagatgggctcctgcttgg 31541



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                        
Query: 311   cctttcgatgctgaccgagaacgggaagaaagagaccttgatc 353
             ||||| ||||||||||| ||||||||||||| |||||||||||
Sbjct: 30297 ccttttgatgctgaccgtgaacgggaagaaacagaccttgatc 30255



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                        
Query: 473   acccttatataacctttagaaaatgcattcttaaattcagtgtcatccagtttctttat 531
             |||||||| | |||||||||||| |||||| | |||||| ||||||| |||||||||||
Sbjct: 29970 acccttatgtgacctttagaaaaggcattcctgaattcactgtcatcaagtttctttat 29912



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                              
Query: 532   agcatatttcatatcatcatagtttgtgtagtc 564
             |||||||||||| ||||||||||||||||||||
Sbjct: 29695 agcatatttcatgtcatcatagtttgtgtagtc 29663



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 262   agaagcaattggggatttggatcttgctggtgatct 297
             ||||||| |||| |||||||||||||||||||||||
Sbjct: 31409 agaagcatttggagatttggatcttgctggtgatct 31374

---

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 73/81 (90%)
 Strand = Plus / Minus

                                                                            
Query: 395      ctcctgcttttgctgcggctacgacttgggctccggctacgtgagtaggagcgcccacgt 454
                |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||  | || 
Sbjct: 12788678 ctcctgcttttgcttcggctacgacttgggcttcggctacgtgaataggagcgggcgcgc 12788619

                                     
Query: 455      ttgccatcgtattccttcacc 475
                |||||||| ||||||||||||
Sbjct: 12788618 ttgccatcatattccttcacc 12788598



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                   
Query: 176      tcaggtgaccgtgaacgagatgggctcctgcttgg 210
                ||||| |||||||||||||||||||||||||||||
Sbjct: 12790122 tcaggagaccgtgaacgagatgggctcctgcttgg 12790088



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                           
Query: 311      cctttcgatgctgaccgagaacgggaagaaagagaccttgatc 353
                ||||| ||||||||||| ||||||||||||| |||||||||||
Sbjct: 12788844 ccttttgatgctgaccgtgaacgggaagaaacagaccttgatc 12788802



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                           
Query: 473      acccttatataacctttagaaaatgcattcttaaattcagtgtcatccagtttctttat 531
                |||||||| | |||||||||||| |||||| | |||||| ||||||| |||||||||||
Sbjct: 12788517 acccttatgtgacctttagaaaaggcattcctgaattcactgtcatcaagtttctttat 12788459



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                                 
Query: 532      agcatatttcatatcatcatagtttgtgtagtc 564
                |||||||||||| ||||||||||||||||||||
Sbjct: 12788242 agcatatttcatgtcatcatagtttgtgtagtc 12788210



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                    
Query: 262      agaagcaattggggatttggatcttgctggtgatct 297
                ||||||| |||| |||||||||||||||||||||||
Sbjct: 12789956 agaagcatttggagatttggatcttgctggtgatct 12789921

---

>dbj|AK106176.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C08, full
           insert sequence
          Length = 1352

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 124/149 (83%)
 Strand = Plus / Minus

                                                                       
Query: 416 cgacttgggctccggctacgtgagtaggagcgcccacgtttgccatcgtattccttcacc 475
           |||||| |||| ||||| |||||||| || || |  || || ||||| || |||||||||
Sbjct: 743 cgacttcggcttcggcttcgtgagtatgaacggctgcgctttccatcatactccttcacc 684

                                                                       
Query: 476 cttatataacctttagaaaatgcattcttaaattcagtgtcatccagtttctttatagca 535
           ||||||||  | || || || ||||||||||||||||  ||||| |||||| | ||||||
Sbjct: 683 cttatataggcctttgagaaggcattcttaaattcagaatcatcaagtttcctgatagca 624

                                        
Query: 536 tatttcatatcatcatagtttgtgtagtc 564
           || ||||| ||||||||||||||||||||
Sbjct: 623 tacttcatgtcatcatagtttgtgtagtc 595



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 281 gatcttgctggtgatcttga 300
           ||||||||||||||||||||
Sbjct: 896 gatcttgctggtgatcttga 877

---

>dbj|AK072839.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023141I23, full
           insert sequence
          Length = 1899

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 124/149 (83%)
 Strand = Plus / Minus

                                                                       
Query: 416 cgacttgggctccggctacgtgagtaggagcgcccacgtttgccatcgtattccttcacc 475
           |||||| |||| ||||| |||||||| || || |  || || ||||| || |||||||||
Sbjct: 811 cgacttcggcttcggcttcgtgagtatgaacggctgcgctttccatcatactccttcacc 752

                                                                       
Query: 476 cttatataacctttagaaaatgcattcttaaattcagtgtcatccagtttctttatagca 535
           ||||||||  | || || || ||||||||||||||||  ||||| |||||| | ||||||
Sbjct: 751 cttatataggcctttgagaaggcattcttaaattcagaatcatcaagtttcctgatagca 692

                                        
Query: 536 tatttcatatcatcatagtttgtgtagtc 564
           || ||||| ||||||||||||||||||||
Sbjct: 691 tacttcatgtcatcatagtttgtgtagtc 663

---

>gb|DQ019639.1| Triticum aestivum alternative splicing regulator (SRp30a) mRNA,
           complete cds
          Length = 1189

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                       
Query: 497 gcattcttaaattcagtgtcatccagtttctttatagcatatttcatatcatcatagttt 556
           ||||| ||||||||||| ||||| || ||| |||||||||| ||||||||||||||||||
Sbjct: 624 gcatttttaaattcagtatcatcaagcttccttatagcatacttcatatcatcatagttt 565

             
Query: 557 gt 558
           ||
Sbjct: 564 gt 563

---

>ref|NM_100783.3| Arabidopsis thaliana ATSRP30.1; RNA binding AT1G09140 (ATSRP30.1)
           transcript variant AT1G09140.1 mRNA, complete cds
          Length = 1144

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                       
Query: 464 tattccttcacccttatataacctttagaaaatgcattcttaaattcagtgtcatccagt 523
           |||||| |||||| ||||||| |  |||| || |||||   |||||||||| |||| |||
Sbjct: 675 tattccctcacccgtatataagcactagagaaagcatttcgaaattcagtggcatcaagt 616

                                           
Query: 524 ttctttatagcatatttcatatcatcatagtt 555
           ||| |||| || || |||||||||||||||||
Sbjct: 615 ttccttattgcgtacttcatatcatcatagtt 584

---

>ref|NM_148447.2| Arabidopsis thaliana ATSRP30.1; RNA binding AT1G09140 (ATSRP30.1)
           transcript variant AT1G09140.2 mRNA, complete cds
          Length = 1609

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                       
Query: 464 tattccttcacccttatataacctttagaaaatgcattcttaaattcagtgtcatccagt 523
           |||||| |||||| ||||||| |  |||| || |||||   |||||||||| |||| |||
Sbjct: 695 tattccctcacccgtatataagcactagagaaagcatttcgaaattcagtggcatcaagt 636

                                           
Query: 524 ttctttatagcatatttcatatcatcatagtt 555
           ||| |||| || || |||||||||||||||||
Sbjct: 635 ttccttattgcgtacttcatatcatcatagtt 604

---

>gb|DQ200373.1| Solanum tuberosum clone 059F05 pre-mRNA splicing factor-like
           protein mRNA, complete cds
          Length = 1257

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 509 tcagtgtcatccagtttctttatagcatatttcatatcatcatagtttgtgtagtc 564
           ||||| ||||| |||||  |||||||||||||||| || ||||| |||||||||||
Sbjct: 638 tcagtatcatcaagttttcttatagcatatttcatgtcttcataatttgtgtagtc 583



 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 394 gctcctgcttttgctgcggctacgactt 421
           |||||||||| |||| ||||||||||||
Sbjct: 729 gctcctgcttctgctccggctacgactt 702

---

>gb|AY150486.1| Arabidopsis thaliana putative SF2/ASF splicing modulator Srp30
           (At1g09140) mRNA, complete cds
          Length = 838

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                       
Query: 464 tattccttcacccttatataacctttagaaaatgcattcttaaattcagtgtcatccagt 523
           |||||| |||||| ||||||| |  |||| || |||||   |||||||||| |||| |||
Sbjct: 554 tattccctcacccgtatataagcactagagaaagcatttcgaaattcagtggcatcaagt 495

                                           
Query: 524 ttctttatagcatatttcatatcatcatagtt 555
           ||| |||| || || |||||||||||||||||
Sbjct: 494 ttccttattgcgtacttcatatcatcatagtt 463

---

>gb|AY050912.1| Arabidopsis thaliana putative SF2/ASF splicing modulator Srp30
           protein (At1g09140) mRNA, partial cds
          Length = 933

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                       
Query: 464 tattccttcacccttatataacctttagaaaatgcattcttaaattcagtgtcatccagt 523
           |||||| |||||| ||||||| |  |||| || |||||   |||||||||| |||| |||
Sbjct: 373 tattccctcacccgtatataagcactagagaaagcatttcgaaattcagtggcatcaagt 314

                                           
Query: 524 ttctttatagcatatttcatatcatcatagtt 555
           ||| |||| || || |||||||||||||||||
Sbjct: 313 ttccttattgcgtacttcatatcatcatagtt 282

---

>emb|BX816682.1|CNS0AD6Q Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH62ZD04 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1417

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                       
Query: 464 tattccttcacccttatataacctttagaaaatgcattcttaaattcagtgtcatccagt 523
           |||||| |||||| ||||||| |  |||| || |||||   |||||||||| |||| |||
Sbjct: 582 tattccctcacccgtatataagcactagagaaagcatttcgaaattcagtggcatcaagt 523

                                           
Query: 524 ttctttatagcatatttcatatcatcatagtt 555
           ||| |||| || || |||||||||||||||||
Sbjct: 522 ttccttattgcgtacttcatatcatcatagtt 491

---

>emb|BX815693.1|CNS0AAVQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS84ZH01 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1505

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                       
Query: 464 tattccttcacccttatataacctttagaaaatgcattcttaaattcagtgtcatccagt 523
           |||||| |||||| ||||||| |  |||| || |||||   |||||||||| |||| |||
Sbjct: 667 tattccctcacccgtatataagcactagagaaagcatttcgaaattcagtggcatcaagt 608

                                           
Query: 524 ttctttatagcatatttcatatcatcatagtt 555
           ||| |||| || || |||||||||||||||||
Sbjct: 607 ttccttattgcgtacttcatatcatcatagtt 576

---

>gb|BT013695.1| Lycopersicon esculentum clone 132536R, mRNA sequence
          Length = 1929

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 514 gtcatccagtttctttatagcatatttcatatcatcatagtttgtgtagtc 564
           |||||| ||||||||||| || ||| |||||||||||||||| || |||||
Sbjct: 616 gtcatcaagtttctttatcgcgtatctcatatcatcatagttggtatagtc 566

---

>gb|BT013343.1| Lycopersicon esculentum clone 135171R, mRNA sequence
          Length = 1677

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 509 tcagtgtcatccagtttctttatagcatatttcatatcatcatagtttgt 558
           |||| |||||| || || || |||||||||||||| ||||||||||||||
Sbjct: 537 tcagagtcatcaagctttttgatagcatatttcatgtcatcatagtttgt 488

---

>gb|BT012710.1| Lycopersicon esculentum clone 113590R, mRNA sequence
          Length = 1107

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                             
Query: 509 tcagtgtcatccagtttctttatagcatatttcatatcatcatagtttgt 558
           |||| |||||| || || || |||||||||||||| ||||||||||||||
Sbjct: 574 tcagagtcatcaagctttttgatagcatatttcatgtcatcatagtttgt 525

---

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 532      agcatatttcatatcatcatagtttgtgtagtc 564
                |||||| ||||| ||||||||||||||||||||
Sbjct: 28418401 agcatacttcatgtcatcatagtttgtgtagtc 28418433

---

>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0470D12
          Length = 157248

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                               
Query: 532    agcatatttcatatcatcatagtttgtgtagtc 564
              |||||| ||||| ||||||||||||||||||||
Sbjct: 143964 agcatacttcatgtcatcatagtttgtgtagtc 143996

---

>dbj|AP006269.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
           PAC clone:P0304A10
          Length = 21211

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 532 agcatatttcatatcatcatagtttgtgtagtc 564
           |||||| ||||| ||||||||||||||||||||
Sbjct: 188 agcatacttcatgtcatcatagtttgtgtagtc 220

---

>dbj|AP006409.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT25E08, TM0299,
             complete sequence
          Length = 109465

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 533   gcatatttcatatcatcatagtttgtgtagtc 564
             |||||||||||||||||||| || ||||||||
Sbjct: 91315 gcatatttcatatcatcataattggtgtagtc 91346

---

>ref|NM_116476.3| Arabidopsis thaliana RNA binding / nucleic acid binding AT4G02430
           transcript variant AT4G02430.2 mRNA, complete cds
          Length = 1513

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 394 gctcctgcttttgctgcggctacgact 420
           |||||||||| ||||||||||||||||
Sbjct: 735 gctcctgcttctgctgcggctacgact 709

---

>ref|NM_179206.1| Arabidopsis thaliana RNA binding / nucleic acid binding AT4G02430
           transcript variant AT4G02430.1 mRNA, complete cds
          Length = 1555

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 394 gctcctgcttttgctgcggctacgact 420
           |||||||||| ||||||||||||||||
Sbjct: 745 gctcctgcttctgctgcggctacgact 719

---

>gb|AY056185.1| Arabidopsis thaliana At4g02430 mRNA sequence
          Length = 1523

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 394 gctcctgcttttgctgcggctacgact 420
           |||||||||| ||||||||||||||||
Sbjct: 745 gctcctgcttctgctgcggctacgact 719

---

>emb|AL161494.2|ATCHRIV6 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 6
          Length = 194892

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 394    gctcctgcttttgctgcggctacgact 420
              |||||||||| ||||||||||||||||
Sbjct: 106426 gctcctgcttctgctgcggctacgact 106400

---

>gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sandra5, complete
             sequence; splicing factor SF2-like protein (SF2) and
             universal stress protein (USP1) genes and Hv
             receptor-kinase-like pseudogene, complete cds; and
             retrotransposons Sandra6 and Sandra7, complete sequence
          Length = 82293

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 532   agcatatttcatatcatcatagtttgt 558
             |||||| ||||||||||||||||||||
Sbjct: 34674 agcatacttcatatcatcatagtttgt 34648

---

>emb|BX828050.1|CNS0A30C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH48ZE05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1487

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 394 gctcctgcttttgctgcggctacgact 420
           |||||||||| ||||||||||||||||
Sbjct: 710 gctcctgcttctgctgcggctacgact 684

---

>emb|BX827158.1|CNS0A2S3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS18ZB01 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1506

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 394 gctcctgcttttgctgcggctacgact 420
           |||||||||| ||||||||||||||||
Sbjct: 710 gctcctgcttctgctgcggctacgact 684

---

>gb|AF069298.1|T14P8 Arabidopsis thaliana BAC T14P8
          Length = 94536

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 394   gctcctgcttttgctgcggctacgact 420
             |||||||||| ||||||||||||||||
Sbjct: 40188 gctcctgcttctgctgcggctacgact 40214

---

>dbj|AK118074.1| Arabidopsis thaliana At4g02430 mRNA for unknown protein, complete
           cds, clone: RAFL19-32-J05
          Length = 2059

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 394 gctcctgcttttgctgcggctacgact 420
           |||||||||| ||||||||||||||||
Sbjct: 849 gctcctgcttctgctgcggctacgact 823

---

>gb|AC146389.3| Pan troglodytes BAC clone RP43-143J12 from 7, complete sequence
          Length = 141930

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 483    aacctttagaaaatgcattctt 504
              ||||||||||||||||||||||
Sbjct: 120963 aacctttagaaaatgcattctt 120984

---

>gb|AC145994.2| Pan troglodytes BAC clone RP43-13J21 from 7, complete sequence
          Length = 164345

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 483   aacctttagaaaatgcattctt 504
             ||||||||||||||||||||||
Sbjct: 71400 aacctttagaaaatgcattctt 71421

---

>ref|XM_962170.1| PREDICTED: Tribolium castaneum similar to CG6987-PA (LOC655610),
           mRNA
          Length = 1018

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 518 tccagtttctttatagcatatttcat 543
           |||| |||||||||||||||||||||
Sbjct: 497 tccaatttctttatagcatatttcat 472

---

>gb|AC083870.2|AC083870 Homo sapiens chromosome 7 clone RP11-248K17, complete sequence
          Length = 171530

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 483    aacctttagaaaatgcattctt 504
              ||||||||||||||||||||||
Sbjct: 118350 aacctttagaaaatgcattctt 118329

---

>emb|AL671913.10| Mouse DNA sequence from clone RP23-136P3 on chromosome 4, complete
              sequence
          Length = 220940

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 239    cttgtcactacaccgtttgctggagaagca 268
              |||||||||||||| ||||||| |||||||
Sbjct: 171068 cttgtcactacaccatttgctgtagaagca 171039

---

>gb|AC150654.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094L06,
              complete sequence
          Length = 189328

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 528    ttatagcatatttcatatcat 548
              |||||||||||||||||||||
Sbjct: 106173 ttatagcatatttcatatcat 106193

---

>gb|AC140724.4| Mus musculus chromosome 8, clone RP24-291N1, complete sequence
          Length = 159182

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 62    actagttgaatgaaagactgg 82
             |||||||||||||||||||||
Sbjct: 64811 actagttgaatgaaagactgg 64791

---

>gb|AC109646.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017K22,
              complete sequence
          Length = 176399

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 528    ttatagcatatttcatatcat 548
              |||||||||||||||||||||
Sbjct: 175068 ttatagcatatttcatatcat 175088

---

>gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome 8, complete sequence
          Length = 176667

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 62     actagttgaatgaaagactgg 82
              |||||||||||||||||||||
Sbjct: 165683 actagttgaatgaaagactgg 165703

---

>emb|BX530033.6| Zebrafish DNA sequence from clone CH211-209F14 in linkage group 9,
              complete sequence
          Length = 221265

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 40     tataccatttaacagacaaaa 60
              |||||||||||||||||||||
Sbjct: 183373 tataccatttaacagacaaaa 183353

---

>emb|AL645907.9| Mouse DNA sequence from clone RP23-9N7 on chromosome 11 Contains the 5'
              end of a novel gene, a novel gene, the Clk4 gene for CDC
              like kinase 4, the 5' end of the Col23a1 gene for
              procollagen (type XXIII, alpha 1) and two CpG islands,
              complete sequence
          Length = 219268

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 229    tgcccttgaacttgtcactac 249
              |||||||||||||||||||||
Sbjct: 103483 tgcccttgaacttgtcactac 103463

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 528      ttatagcatatttcatatcat 548
                |||||||||||||||||||||
Sbjct: 16120378 ttatagcatatttcatatcat 16120398

---

>gb|AC107218.4| Homo sapiens BAC clone RP11-561A13 from 2, complete sequence
          Length = 164620

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 501   tcttaaattcagtgtcatcca 521
             |||||||||||||||||||||
Sbjct: 20272 tcttaaattcagtgtcatcca 20292

---

>ref|XM_226742.3| PREDICTED: Rattus norvegicus baculoviral IAP repeat-containing 1b
            (Birc1b), mRNA
          Length = 4275

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 535  atatttcatatcatcatagtt 555
            |||||||||||||||||||||
Sbjct: 3000 atatttcatatcatcatagtt 2980

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 528      ttatagcatatttcatatcat 548
                |||||||||||||||||||||
Sbjct: 16210400 ttatagcatatttcatatcat 16210420

---

>ref|XM_633915.1| Dictyostelium discoideum hypothetical protein (DDB0218510), partial
           mRNA
          Length = 3873

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 533 gcatatttcatatcatcata 552
           ||||||||||||||||||||
Sbjct: 899 gcatatttcatatcatcata 880

---

>gb|AC100043.9| Mus musculus chromosome 3, clone RP23-32D13, complete sequence
          Length = 234931

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                             
Query: 17    aatttttga-aaagaatccacaagtataccat 47
             ||||||||| |||||||||| |||||||||||
Sbjct: 62683 aatttttgagaaagaatccaaaagtataccat 62652

---

>gb|BC059733.1| Mus musculus protamine 1, mRNA (cDNA clone MGC:74397
           IMAGE:6774637), complete cds
          Length = 430

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 394 gctcctgcttttgctgcggc 413
           ||||||||||||||||||||
Sbjct: 131 gctcctgcttttgctgcggc 112

---

>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 280    ggatcttgctggtgatcttgacgg 303
              |||| |||||||||||||||||||
Sbjct: 405730 ggatgttgctggtgatcttgacgg 405753

---

>ref|XM_799269.1| Trypanosoma cruzi strain CL Brener hexose transporter
            (Tc00.1047053508551.30) partial mRNA
          Length = 1635

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 206  cttggactgtgcttctttgggcttgccc 233
            ||||||| ||||||||||| ||||||||
Sbjct: 1276 cttggaccgtgcttctttgtgcttgccc 1303

---

>ref|XM_802916.1| Trypanosoma cruzi strain CL Brener hexose transporter
            (Tc00.1047053511041.40) partial mRNA
          Length = 1635

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 206  cttggactgtgcttctttgggcttgccc 233
            ||||||| ||||||||||| ||||||||
Sbjct: 1276 cttggaccgtgcttctttgtgcttgccc 1303

---

>ref|XM_809728.1| Trypanosoma cruzi strain CL Brener hexose transporter
            (Tc00.1047053506355.10) partial mRNA
          Length = 1635

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 206  cttggactgtgcttctttgggcttgccc 233
            ||||||| ||||||||||| ||||||||
Sbjct: 1276 cttggaccgtgcttctttgtgcttgccc 1303

---

>ref|XM_797240.1| Trypanosoma cruzi strain CL Brener glucose transporter
           (Tc00.1047053424937.10) partial mRNA
          Length = 516

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 206 cttggactgtgcttctttgggcttgccc 233
           ||||||| ||||||||||| ||||||||
Sbjct: 157 cttggaccgtgcttctttgtgcttgccc 184

---

>gb|AC136288.23| Medicago truncatula clone mth2-13o7, complete sequence
          Length = 110437

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 491   gaaaatgcattcttaaattcagtgtcatccagtttc 526
             ||||||||||||  |||||||| |||||| ||||||
Sbjct: 59109 gaaaatgcattccgaaattcagagtcatcaagtttc 59144

---

>emb|Z46939.1|BTPRMTNP2 R.norvegicus PRM1, PRM2, PRM3 and TNP2 genes
          Length = 13187

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 394 gctcctgcttttgctgcggc 413
           ||||||||||||||||||||
Sbjct: 867 gctcctgcttttgctgcggc 848

---

>gb|AC119566.11| Homo sapiens 12 BAC RP11-41H6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 70009

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 485   cctttagaaaatgcattcttaaat 508
             ||||||||||||||||| ||||||
Sbjct: 42906 cctttagaaaatgcatttttaaat 42883

---

>gb|AC096639.2| Homo sapiens chromosome 1 clone RP11-323I1, complete sequence
          Length = 195410

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 490   agaaaatgcattcttaaatt 509
             ||||||||||||||||||||
Sbjct: 73254 agaaaatgcattcttaaatt 73273

---

>gb|AC134522.9| Medicago truncatula clone mth2-12g4, complete sequence
          Length = 129197

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 491   gaaaatgcattcttaaattcagtgtcatccagtttc 526
             ||||||||||||  |||||||| |||||| ||||||
Sbjct: 69369 gaaaatgcattccgaaattcagagtcatcaagtttc 69404

---

>gb|AC106727.5| Homo sapiens 3q BAC RP11-534K3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 153692

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 45    catttaacagacaaaatactagtt 68
             ||||||||||||||||| ||||||
Sbjct: 38314 catttaacagacaaaatcctagtt 38337

---

>gb|AC099054.2| Homo sapiens chromosome 3 clone RP11-489C3, complete sequence
          Length = 201564

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 518    tccagtttctttatagcata 537
              ||||||||||||||||||||
Sbjct: 105667 tccagtttctttatagcata 105686

---

>gb|AC023538.7| Homo sapiens chromosome 8, clone RP11-510I21, complete sequence
          Length = 189543

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 45     catttaacagacaaaatactagtt 68
              ||||||||||||||||| ||||||
Sbjct: 115384 catttaacagacaaaatcctagtt 115361

---

>gb|AC080009.13| Homo sapiens 3q BAC RP11-460M17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 163469

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 520    cagtttctttatagcatatt 539
              ||||||||||||||||||||
Sbjct: 111583 cagtttctttatagcatatt 111602

---

>gb|AC025159.28| Homo sapiens 12 BAC RP11-1082K22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 209961

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     aatttttgaaaagaatccac 36
              ||||||||||||||||||||
Sbjct: 124439 aatttttgaaaagaatccac 124420

---

>gb|DP000051.1| Carollia perspicillata target 126 genomic scaffold
          Length = 501879

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 321   ctgaccgagaacgggaagaa 340
             ||||||||||||||||||||
Sbjct: 11665 ctgaccgagaacgggaagaa 11684

---

>gb|U58746.1| Caenorhabditis elegans cosmid R05G6, complete sequence
          Length = 41811

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    tttgaaaagaatccacaagt 40
             ||||||||||||||||||||
Sbjct: 16541 tttgaaaagaatccacaagt 16522

---

>ref|NM_068816.3| Caenorhabditis elegans R05G6.10 (R05G6.10) mRNA, complete cds
          Length = 1632

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 21   tttgaaaagaatccacaagt 40
            ||||||||||||||||||||
Sbjct: 1278 tttgaaaagaatccacaagt 1297

---

>dbj|AK018980.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:1700123E07 product:protamine 1, full
           insert sequence
          Length = 409

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 394 gctcctgcttttgctgcggc 413
           ||||||||||||||||||||
Sbjct: 135 gctcctgcttttgctgcggc 116

---

>dbj|AK007068.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:1700094L18 product:protamine 1, full
           insert sequence
          Length = 401

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 394 gctcctgcttttgctgcggc 413
           ||||||||||||||||||||
Sbjct: 132 gctcctgcttttgctgcggc 113

---

>gb|AC024942.18|AC024942 Homo sapiens 12 BAC RP11-1115M13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 146120

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     aatttttgaaaagaatccac 36
              ||||||||||||||||||||
Sbjct: 105586 aatttttgaaaagaatccac 105567

---

>gb|AC155722.9| Mus musculus 6 BAC RP24-204J8 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 198481

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     taccatttaacagacaaaat 61
              ||||||||||||||||||||
Sbjct: 166726 taccatttaacagacaaaat 166707

---

>gb|AC073288.27| Homo sapiens 3 BAC RP11-543D10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 174025

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   gcggtgcagtgcttctattc 165
             ||||||||||||||||||||
Sbjct: 73325 gcggtgcagtgcttctattc 73344

---

>gb|AC073573.27| Homo sapiens 12 BAC RP11-1136G11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 157807

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   aatacaagttcacactgctg 146
             ||||||||||||||||||||
Sbjct: 25504 aatacaagttcacactgctg 25523

---

>gb|AC093927.3| Homo sapiens chromosome 3 clone RP11-81I24, complete sequence
          Length = 183190

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 518   tccagtttctttatagcata 537
             ||||||||||||||||||||
Sbjct: 21411 tccagtttctttatagcata 21430

---

>dbj|BS000062.1| Pan troglodytes chromosome 22 clone:PTB-045C17, map 22, complete
             sequences
          Length = 171187

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 537   atttcatatcatcatagttt 556
             ||||||||||||||||||||
Sbjct: 86140 atttcatatcatcatagttt 86121

---

>gb|AY107576.1| Zea mays PCO119766 mRNA sequence
          Length = 657

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 224 gggcttgcccttgaacttgt 243
           ||||||||||||||||||||
Sbjct: 373 gggcttgcccttgaacttgt 354

---

>emb|CT573504.2| Medicago truncatula chromosome 5 clone mth2-178o19, COMPLETE SEQUENCE
          Length = 132030

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 227  cttgcccttgaacttgtcac 246
            ||||||||||||||||||||
Sbjct: 4810 cttgcccttgaacttgtcac 4791

---

>dbj|AP001679.1| Homo sapiens genomic DNA, chromosome 21q, section 23/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 537    atttcatatcatcatagttt 556
              ||||||||||||||||||||
Sbjct: 160908 atttcatatcatcatagttt 160889

---

>gb|AC109163.16| Mus musculus chromosome 8, clone RP24-174F12, complete sequence
          Length = 189849

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 503   ttaaattcagtgtcatccag 522
             ||||||||||||||||||||
Sbjct: 66672 ttaaattcagtgtcatccag 66653

---

>gb|AC153592.3| Mus musculus 6 BAC RP23-20C15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 195726

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     taccatttaacagacaaaat 61
              ||||||||||||||||||||
Sbjct: 192638 taccatttaacagacaaaat 192657

---

>ref|NM_013637.4| Mus musculus protamine 1 (Prm1), mRNA
          Length = 401

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 394 gctcctgcttttgctgcggc 413
           ||||||||||||||||||||
Sbjct: 132 gctcctgcttttgctgcggc 113

---

>ref|NM_001002850.1| Rattus norvegicus protamine 1 (mapped) (Prm1_mapped), mRNA
          Length = 156

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 394 gctcctgcttttgctgcggc 413
           ||||||||||||||||||||
Sbjct: 39  gctcctgcttttgctgcggc 20

---

>emb|CT033765.2| Medicago truncatula chromosome 5 clone mth2-105d20, COMPLETE SEQUENCE
          Length = 131814

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 227  cttgcccttgaacttgtcac 246
            ||||||||||||||||||||
Sbjct: 5894 cttgcccttgaacttgtcac 5913

---

>emb|CT010583.8| Mouse DNA sequence from clone RP23-203B24 on chromosome 16, complete
             sequence
          Length = 234878

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 394   gctcctgcttttgctgcggc 413
             ||||||||||||||||||||
Sbjct: 86321 gctcctgcttttgctgcggc 86340

---

>emb|X14003.1|MMPROT1R Mouse protamine 1 mRNA
          Length = 399

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 394 gctcctgcttttgctgcggc 413
           ||||||||||||||||||||
Sbjct: 131 gctcctgcttttgctgcggc 112

---

>emb|X07625.1|MMPROT1 Mouse protamine 1 gene
          Length = 1186

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 394 gctcctgcttttgctgcggc 413
           ||||||||||||||||||||
Sbjct: 691 gctcctgcttttgctgcggc 672

---

>gb|M83729.1|RATEXONS Rat exons 1-2
          Length = 402

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 394 gctcctgcttttgctgcggc 413
           ||||||||||||||||||||
Sbjct: 73  gctcctgcttttgctgcggc 54

---

>emb|Z47352.1|MMPRMGNS M.musculus PRM1, PRM2, PRM3 and TNP1 genes
          Length = 13812

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 394 gctcctgcttttgctgcggc 413
           ||||||||||||||||||||
Sbjct: 691 gctcctgcttttgctgcggc 672

---

>gb|AC121107.19| Mus musculus chromosome 1, clone RP24-240P15, complete sequence
          Length = 155435

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 490    agaaaatgcattcttaaatt 509
              ||||||||||||||||||||
Sbjct: 111056 agaaaatgcattcttaaatt 111037

---

>gb|DQ082992.1| Mus musculus protamin 1 antisense RNA (Prm1) gene, partial sequence
          Length = 203

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 394 gctcctgcttttgctgcggc 413
           ||||||||||||||||||||
Sbjct: 128 gctcctgcttttgctgcggc 147

---

>gb|DQ072382.1| Mus musculus A-Prm(1-2)-c antisense RNA, complete sequence
          Length = 1216

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 394 gctcctgcttttgctgcggc 413
           ||||||||||||||||||||
Sbjct: 929 gctcctgcttttgctgcggc 948

---

>gb|DQ072381.1| Mus musculus A-Prm(1-2)-b antisense RNA, complete sequence
          Length = 1069

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 394 gctcctgcttttgctgcggc 413
           ||||||||||||||||||||
Sbjct: 782 gctcctgcttttgctgcggc 801

---

>gb|DQ072380.1| Mus musculus A-Prm(1-2)-a antisense RNA, complete sequence
          Length = 953

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 394 gctcctgcttttgctgcggc 413
           ||||||||||||||||||||
Sbjct: 666 gctcctgcttttgctgcggc 685

---

>gb|M27500.1|MUSPROT Mus musculus protamine mRNA, complete cds
          Length = 385

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 394 gctcctgcttttgctgcggc 413
           ||||||||||||||||||||
Sbjct: 117 gctcctgcttttgctgcggc 98

---

>gb|K02926.1|MUSPRO1S Mouse protamine 1 mRNA, complete cds
          Length = 385

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 394 gctcctgcttttgctgcggc 413
           ||||||||||||||||||||
Sbjct: 117 gctcctgcttttgctgcggc 98

---

>gb|U05588.1|TCU05588 Trypanosoma cruzi CL hexose transporter gene, complete cds
          Length = 2583

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 206  cttggactgtgcttctttgggcttgccc 233
            ||||||| ||||||||||| ||||||||
Sbjct: 1548 cttggaccgtgcttctttgtgcttgccc 1575

---

>dbj|AP001251.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B5P9, LL56-APP
              region, complete sequence
          Length = 150681

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 537    atttcatatcatcatagttt 556
              ||||||||||||||||||||
Sbjct: 149131 atttcatatcatcatagttt 149112


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,520,887
Number of Sequences: 3902068
Number of extensions: 5520887
Number of successful extensions: 113053
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 112678
Number of HSP's gapped (non-prelim): 375
length of query: 572
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 549
effective length of database: 17,143,297,704
effective search space: 9411670439496
effective search space used: 9411670439496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---