ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21e03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF216582.1|AF216582 Avena sativa fructose 1,6-bisphosphate aldolase precursor, mRNA, complete cds; nuclear gene for chloroplast product Length = 1577 Score = 168 bits (85), Expect = 6e-39 Identities = 150/176 (85%) Strand = Plus / Minus Query: 103 gatcagtagctgtagntcttgacgaacatgtncnctntggcagctgcggcctcgccgtng 162 ||||||||||||||| |||||||||||||| | | |||| || ||||||||||||| | Sbjct: 1267 gatcagtagctgtagttcttgacgaacatgccctccttggcggccgcggcctcgccgtcg 1208 Query: 163 ctggtgtacttgccgagctgcgccaggganttggncttggngcgcattagcagngcctgc 222 ||||||||||||||||||||||||||||| |||| ||||| ||||| || || |||| | Sbjct: 1207 ctggtgtacttgccgagctgcgccagggagttggccttggcgcgcagcagaagcgcctcc 1148 Query: 223 tgcgctgccgctacgttntccggccnnccgccccacgttttgaggcangtgttctg 278 ||||| ||||| ||||| || |||| ||||||||||| |||| ||| |||||||| Sbjct: 1147 tgcgccgccgcgacgttctctggccgcccgccccacgtcttgaagcaggtgttctg 1092 Score = 101 bits (51), Expect = 1e-18 Identities = 54/55 (98%) Strand = Plus / Minus Query: 4 gacacactggctggctaaggtgccctcaagctgctcaaggcgctactagcactct 58 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1356 gacacactgcctggctaaggtgccctcaagctgctcaaggcgctactagcactct 1302
>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0007B15 map S10318, complete sequence Length = 125243 Score = 133 bits (67), Expect = 3e-28 Identities = 144/174 (82%) Strand = Plus / Plus Query: 114 gtagntcttgacgaacatgtncnctntggcagctgcggcctcgccgtngctggtgtactt 173 |||| |||||||||||||| | | |||| | ||||||||||||| |||||||||||| Sbjct: 63362 gtagttcttgacgaacatgccctccttggcctcggcggcctcgccgtcgctggtgtactt 63421 Query: 174 gccgagctgcgccaggganttggncttggngcgcattagcagngcctgctgcgctgccgc 233 ||||||||||||||| || |||| ||||| ||| | ||||| || | |||||| ||| Sbjct: 63422 gccgagctgcgccagcgagttggccttggcgcggaggagcagcgcgtcctgcgccgcctt 63481 Query: 234 tacgttntccggccnnccgccccacgttttgaggcangtgttctgcagcgccct 287 ||||| |||||| ||||||||||| |||||||| ||||||||||||||||| Sbjct: 63482 cacgttctccggctgcccgccccacgtcttgaggcacgtgttctgcagcgccct 63535
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 3e-28 Identities = 144/174 (82%) Strand = Plus / Plus Query: 114 gtagntcttgacgaacatgtncnctntggcagctgcggcctcgccgtngctggtgtactt 173 |||| |||||||||||||| | | |||| | ||||||||||||| |||||||||||| Sbjct: 3469407 gtagttcttgacgaacatgccctccttggcctcggcggcctcgccgtcgctggtgtactt 3469466 Query: 174 gccgagctgcgccaggganttggncttggngcgcattagcagngcctgctgcgctgccgc 233 ||||||||||||||| || |||| ||||| ||| | ||||| || | |||||| ||| Sbjct: 3469467 gccgagctgcgccagcgagttggccttggcgcggaggagcagcgcgtcctgcgccgcctt 3469526 Query: 234 tacgttntccggccnnccgccccacgttttgaggcangtgttctgcagcgccct 287 ||||| |||||| ||||||||||| |||||||| ||||||||||||||||| Sbjct: 3469527 cacgttctccggctgcccgccccacgtcttgaggcacgtgttctgcagcgccct 3469580
>dbj|AK104899.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C04, full insert sequence Length = 1492 Score = 133 bits (67), Expect = 3e-28 Identities = 144/174 (82%) Strand = Plus / Minus Query: 114 gtagntcttgacgaacatgtncnctntggcagctgcggcctcgccgtngctggtgtactt 173 |||| |||||||||||||| | | |||| | ||||||||||||| |||||||||||| Sbjct: 1252 gtagttcttgacgaacatgccctccttggcctcggcggcctcgccgtcgctggtgtactt 1193 Query: 174 gccgagctgcgccaggganttggncttggngcgcattagcagngcctgctgcgctgccgc 233 ||||||||||||||| || |||| ||||| ||| | ||||| || | |||||| ||| Sbjct: 1192 gccgagctgcgccagcgagttggccttggcgcggaggagcagcgcgtcctgcgccgcctt 1133 Query: 234 tacgttntccggccnnccgccccacgttttgaggcangtgttctgcagcgccct 287 ||||| |||||| ||||||||||| |||||||| ||||||||||||||||| Sbjct: 1132 cacgttctccggctgcccgccccacgtcttgaggcacgtgttctgcagcgccct 1079
>dbj|AK073758.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068O18, full insert sequence Length = 1622 Score = 133 bits (67), Expect = 3e-28 Identities = 144/174 (82%) Strand = Plus / Minus Query: 114 gtagntcttgacgaacatgtncnctntggcagctgcggcctcgccgtngctggtgtactt 173 |||| |||||||||||||| | | |||| | ||||||||||||| |||||||||||| Sbjct: 1248 gtagttcttgacgaacatgccctccttggcctcggcggcctcgccgtcgctggtgtactt 1189 Query: 174 gccgagctgcgccaggganttggncttggngcgcattagcagngcctgctgcgctgccgc 233 ||||||||||||||| || |||| ||||| ||| | ||||| || | |||||| ||| Sbjct: 1188 gccgagctgcgccagcgagttggccttggcgcggaggagcagcgcgtcctgcgccgcctt 1129 Query: 234 tacgttntccggccnnccgccccacgttttgaggcangtgttctgcagcgccct 287 ||||| |||||| ||||||||||| |||||||| ||||||||||||||||| Sbjct: 1128 cacgttctccggctgcccgccccacgtcttgaggcacgtgttctgcagcgccct 1075
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 3e-28 Identities = 144/174 (82%) Strand = Plus / Plus Query: 114 gtagntcttgacgaacatgtncnctntggcagctgcggcctcgccgtngctggtgtactt 173 |||| |||||||||||||| | | |||| | ||||||||||||| |||||||||||| Sbjct: 3478111 gtagttcttgacgaacatgccctccttggcctcggcggcctcgccgtcgctggtgtactt 3478170 Query: 174 gccgagctgcgccaggganttggncttggngcgcattagcagngcctgctgcgctgccgc 233 ||||||||||||||| || |||| ||||| ||| | ||||| || | |||||| ||| Sbjct: 3478171 gccgagctgcgccagcgagttggccttggcgcggaggagcagcgcgtcctgcgccgcctt 3478230 Query: 234 tacgttntccggccnnccgccccacgttttgaggcangtgttctgcagcgccct 287 ||||| |||||| ||||||||||| |||||||| ||||||||||||||||| Sbjct: 3478231 cacgttctccggctgcccgccccacgtcttgaggcacgtgttctgcagcgccct 3478284
>dbj|AK105927.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A10, full insert sequence Length = 2135 Score = 129 bits (65), Expect = 5e-27 Identities = 119/140 (85%) Strand = Plus / Minus Query: 148 gcggcctcgccgtngctggtgtacttgccgagctgcgccaggganttggncttggngcgc 207 ||||||||||||| ||||||||||||||||||||||||||| || |||| ||||| ||| Sbjct: 1209 gcggcctcgccgtcgctggtgtacttgccgagctgcgccagcgagttggccttggcgcgg 1150 Query: 208 attagcagngcctgctgcgctgccgctacgttntccggccnnccgccccacgttttgagg 267 | ||||| || | |||||| ||| ||||| |||||| ||||||||||| |||||| Sbjct: 1149 aggagcagcgcgtcctgcgccgccttcacgttctccggctgcccgccccacgtcttgagg 1090 Query: 268 cangtgttctgcagcgccct 287 || ||||||||||||||||| Sbjct: 1089 cacgtgttctgcagcgccct 1070
>gb|AY103557.1| Zea mays PCO070710 mRNA sequence Length = 1761 Score = 121 bits (61), Expect = 1e-24 Identities = 147/180 (81%) Strand = Plus / Minus Query: 107 agtagctgtagntcttgacgaacatgtncnctntggcagctgcggcctcgccgtngctgg 166 ||||||||||| ||||||||||||| | | |||| | ||||||||||||| | || Sbjct: 1404 agtagctgtagttcttgacgaacattccctccttggcctcggcggcctcgccgtcggagg 1345 Query: 167 tgtacttgccgagctgcgccaggganttggncttggngcgcattagcagngcctgctgcg 226 ||||||||||||||||||||||||| |||| ||||| ||||| ||||| || | ||||| Sbjct: 1344 tgtacttgccgagctgcgccagggagttggccttggcgcgcagcagcagcgcgtcctgcg 1285 Query: 227 ctgccgctacgttntccggccnnccgccccacgttttgaggcangtgttctgcagcgccc 286 | ||| || || |||||| |||||||| || |||||||| |||||||||||||||| Sbjct: 1284 ccgccttgaccttgtccggctggccgccccaggtcttgaggcaggtgttctgcagcgccc 1225
>dbj|D13513.1|RICCHLALD Oryza sativa gene for cytoplasmic aldolase, complete cds, clone:Aldp Length = 2915 Score = 117 bits (59), Expect = 2e-23 Identities = 142/174 (81%) Strand = Plus / Minus Query: 114 gtagntcttgacgaacatgtncnctntggcagctgcggcctcgccgtngctggtgtactt 173 |||| |||||||||||||| | | |||| | ||||||||||||| |||||||||||| Sbjct: 2780 gtagttcttgacgaacatgccctccttggcctcggcggcctcgccgtcgctggtgtactt 2721 Query: 174 gccgagctgcgccaggganttggncttggngcgcattagcagngcctgctgcgctgccgc 233 ||||||||||||||| || |||| ||||| ||| | ||||| | |||||| ||| Sbjct: 2720 gccgagctgcgccagcgagttggccttggcgcggaggagcaggcggtcctgcgccgcctt 2661 Query: 234 tacgttntccggccnnccgccccacgttttgaggcangtgttctgcagcgccct 287 ||||| |||||| ||||||||||| |||||||| ||||||||||||||||| Sbjct: 2660 cacgttctccggctgcccgccccacgtcttgaggcacgtgttctgcagcgccct 2607
>gb|AF017362.1|AF017362 Oryza sativa aldolase mRNA, complete cds Length = 1302 Score = 113 bits (57), Expect = 3e-22 Identities = 117/140 (83%) Strand = Plus / Minus Query: 148 gcggcctcgccgtngctggtgtacttgccgagctgcgccaggganttggncttggngcgc 207 ||||| ||||||| ||||||||||||||||||||||||||| || |||| ||||| ||| Sbjct: 1110 gcggcttcgccgtcgctggtgtacttgccgagctgcgccagcgagttggccttggcgcgg 1051 Query: 208 attagcagngcctgctgcgctgccgctacgttntccggccnnccgccccacgttttgagg 267 | ||||| || | |||||| || ||||| |||||| ||||||||||| |||||| Sbjct: 1050 aggagcagcgcgtcctgcgccgctttcacgttctccggctgcccgccccacgtcttgagg 991 Query: 268 cangtgttctgcagcgccct 287 || ||||||||||||||||| Sbjct: 990 cacgtgttctgcagcgccct 971
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 89.7 bits (45), Expect = 5e-15 Identities = 73/84 (86%) Strand = Plus / Minus Query: 105 tcagtagctgtagntcttgacgaacatgtncnctntggcagctgcggcctcgccgtngct 164 ||||||| ||||| |||||||||||||| | | |||| | ||||||||||||| ||| Sbjct: 3543513 tcagtaggtgtagttcttgacgaacatgccctcgctggcctcggcggcctcgccgtcgct 3543454 Query: 165 ggtgtacttgccgagctgcgccag 188 |||||||||||||||||||||||| Sbjct: 3543453 ggtgtacttgccgagctgcgccag 3543430 Score = 67.9 bits (34), Expect = 2e-08 Identities = 57/66 (86%) Strand = Plus / Minus Query: 222 ctgcgctgccgctacgttntccggccnnccgccccacgttttgaggcangtgttctgcag 281 |||||| ||||| ||||| ||| ||| | ||||||||| |||||||| ||||||||||| Sbjct: 3543419 ctgcgccgccgcgacgttctcccgccggctgccccacgtcttgaggcaggtgttctgcag 3543360 Query: 282 cgccct 287 |||||| Sbjct: 3543359 cgccct 3543354
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 89.7 bits (45), Expect = 5e-15 Identities = 73/84 (86%) Strand = Plus / Minus Query: 105 tcagtagctgtagntcttgacgaacatgtncnctntggcagctgcggcctcgccgtngct 164 ||||||| ||||| |||||||||||||| | | |||| | ||||||||||||| ||| Sbjct: 3543458 tcagtaggtgtagttcttgacgaacatgccctcgctggcctcggcggcctcgccgtcgct 3543399 Query: 165 ggtgtacttgccgagctgcgccag 188 |||||||||||||||||||||||| Sbjct: 3543398 ggtgtacttgccgagctgcgccag 3543375 Score = 67.9 bits (34), Expect = 2e-08 Identities = 57/66 (86%) Strand = Plus / Minus Query: 222 ctgcgctgccgctacgttntccggccnnccgccccacgttttgaggcangtgttctgcag 281 |||||| ||||| ||||| ||| ||| | ||||||||| |||||||| ||||||||||| Sbjct: 3543364 ctgcgccgccgcgacgttctcccgccggctgccccacgtcttgaggcaggtgttctgcag 3543305 Query: 282 cgccct 287 |||||| Sbjct: 3543304 cgccct 3543299
>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103647 Score = 89.7 bits (45), Expect = 5e-15 Identities = 73/84 (86%) Strand = Plus / Minus Query: 105 tcagtagctgtagntcttgacgaacatgtncnctntggcagctgcggcctcgccgtngct 164 ||||||| ||||| |||||||||||||| | | |||| | ||||||||||||| ||| Sbjct: 58441 tcagtaggtgtagttcttgacgaacatgccctcgctggcctcggcggcctcgccgtcgct 58382 Query: 165 ggtgtacttgccgagctgcgccag 188 |||||||||||||||||||||||| Sbjct: 58381 ggtgtacttgccgagctgcgccag 58358 Score = 67.9 bits (34), Expect = 2e-08 Identities = 57/66 (86%) Strand = Plus / Minus Query: 222 ctgcgctgccgctacgttntccggccnnccgccccacgttttgaggcangtgttctgcag 281 |||||| ||||| ||||| ||| ||| | ||||||||| |||||||| ||||||||||| Sbjct: 58347 ctgcgccgccgcgacgttctcccgccggctgccccacgtcttgaggcaggtgttctgcag 58288 Query: 282 cgccct 287 |||||| Sbjct: 58287 cgccct 58282
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 tgccctcaagctgctcaagg 43 |||||||||||||||||||| Sbjct: 2164719 tgccctcaagctgctcaagg 2164738 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 845,924 Number of Sequences: 3902068 Number of extensions: 845924 Number of successful extensions: 13458 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13392 Number of HSP's gapped (non-prelim): 56 length of query: 290 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 268 effective length of database: 17,147,199,772 effective search space: 4595449538896 effective search space used: 4595449538896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
