>MUG1_MOUSE (P28665) Murinoglobulin-1 precursor (MuG1)|
          Length = 1476

 Score = 32.0 bits (71), Expect = 0.37
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 163 DHSVSSFCSYM*CCIWMHLRASHVTFSVYTMSK 65
           +H     CSY  C    H  A HV ++VY++SK
Sbjct: 414 NHKEEDSCSYFYCMEERHASAKHVAYAVYSLSK 446

>BCHZ_RHOS4 (Q3J1A0) Chlorophyllide reductase subunit Z (EC 1.18.-.-) (Chlorin|
           reductase subunit Z)
          Length = 491

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -3

Query: 320 QLPEAVSLLALARSADGTRARYSRLYRTLASKVPA--LKEIVAEMERGGV 177
           +LP  V+ L  +  ++GT A  SR ++ L   +PA  +   +AEM  GGV
Sbjct: 54  ELPIVVTGLGESEMSEGTEASMSRAWKVLDPALPAVVVTGSIAEMIGGGV 103

>CLOCK_DROME (O61735) Circadian locomoter output cycles protein kaput (dCLOCK)|
           (dPAS1)
          Length = 1027

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
 Frame = +1

Query: 223 TLLANVLYSL--EYLALVPSADRA---RASKLTASGNCSNTPFISSKPISA 360
           TLL N L SL  E  A  P+ D +    AS +  SG+C   P  +S+P S+
Sbjct: 427 TLLGNSLASLGTETAATSPAVDSSPMWSASAVQPSGSCQINPLKTSRPASS 477

>TRUA_DESVH (Q72DL8) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 297

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -3

Query: 356 EMGFEEMKGVFEQLPEAVSLLALARSADGTRARYSRL 246
           ++G +  K +  QLP+ + +L + R+AD   AR+  L
Sbjct: 75  KLGVDWQKAINAQLPDDICILDVRRAADDFHARFDAL 111

>HRCA_BIFLO (Q8G6C7) Heat-inducible transcription repressor hrcA|
          Length = 372

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
 Frame = -3

Query: 368 SVLAEMGFEEMKGVFEQLPEAVSLLALARSAD-----GT-RARYSRLYRTLASKVPALKE 207
           S+ A  G+E ++GV + L +A   +AL   A+     GT    +SR    LA    AL+E
Sbjct: 198 SIAASAGYESVRGVADTLADAFESMALDERANELYMSGTSHLAHSRSLADLAPLFDALEE 257

Query: 206 IVAEME 189
            V  M+
Sbjct: 258 QVVLMK 263

>SIM1_MOUSE (Q61045) Single-minded homolog 1 (mSIM1)|
          Length = 765

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +1

Query: 238 VLYSLEYLALVPSADRARASKLTASGNCSNTPFISSKPISART 366
           VL   EY  L  S D+  ASK T S   S+TP IS     A++
Sbjct: 331 VLTDTEYKGLQLSLDQISASKPTFSYTSSSTPTISDNRKGAKS 373

>PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteasome regulatory|
           subunit)
          Length = 398

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 374 RPSVLAEMGFEEMKGVFEQLPEAVSLLALARS-ADGTRARYSRL 246
           +P + AE+G E  KGV    P       LA++ A+ TRA + R+
Sbjct: 163 KPELFAEVGIEPPKGVLLYGPPGTGKTLLAKAVANQTRATFIRV 206

>TRUA_STRCO (O86776) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 284

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = -3

Query: 380 VPRPSVLAEMGFEEMKGVFEQLPEAVSLLALARSADGTRARYSRLYRTLASKV 222
           +PR  V AE   + +K +  +LP  V + AL  +  G  AR+S ++R  A +V
Sbjct: 77  LPR-EVWAEHHVKLLKRLAGRLPRDVRVWALREAPSGFNARFSAVWRRYAYRV 128

>UQCR2_RAT (P32551) Ubiquinol-cytochrome-c reductase complex core protein 2,|
           mitochondrial precursor (EC 1.10.2.2) (Complex III
           subunit II)
          Length = 452

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 8/38 (21%)
 Frame = +1

Query: 250 LEYLALVPSADRARASK--------LTASGNCSNTPFI 339
           L+ +  V  AD  +A+K        +TASGN  NTPF+
Sbjct: 412 LQQIDAVADADVVKAAKKFVSGKKSMTASGNLGNTPFL 449

>RAP_TAROF (O49065) Root allergen protein (RAP)|
          Length = 157

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
 Frame = +1

Query: 85  KRLHGTPSNASIYNITYNYKM---N*HYDLTSLKTPPLSISATISFKAGTLLANVLYSLE 255
           K + G     +I +ITY+  +   +  + + ++ +   SIS TI F+   L+  +     
Sbjct: 41  KTIEGDGGVGTIKSITYSDGVPFTSSKHKVDAIDSNNFSISYTI-FEGDVLMGIIESGTH 99

Query: 256 YLALVPSADRARASKLTASGNCSNTPFISSKPISARTDGL 375
           +L  +PSAD     K +    C     ++ + +S   +GL
Sbjct: 100 HLKFLPSADGGSVYKHSMVFKCKGDAKLTDENVSLMKEGL 139


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,778,162
Number of Sequences: 219361
Number of extensions: 1068793
Number of successful extensions: 2674
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2674
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)