Clone Name | rbasd21d21 |
---|---|
Clone Library Name | barley_pub |
>MUG1_MOUSE (P28665) Murinoglobulin-1 precursor (MuG1)| Length = 1476 Score = 32.0 bits (71), Expect = 0.37 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -1 Query: 163 DHSVSSFCSYM*CCIWMHLRASHVTFSVYTMSK 65 +H CSY C H A HV ++VY++SK Sbjct: 414 NHKEEDSCSYFYCMEERHASAKHVAYAVYSLSK 446
>BCHZ_RHOS4 (Q3J1A0) Chlorophyllide reductase subunit Z (EC 1.18.-.-) (Chlorin| reductase subunit Z) Length = 491 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = -3 Query: 320 QLPEAVSLLALARSADGTRARYSRLYRTLASKVPA--LKEIVAEMERGGV 177 +LP V+ L + ++GT A SR ++ L +PA + +AEM GGV Sbjct: 54 ELPIVVTGLGESEMSEGTEASMSRAWKVLDPALPAVVVTGSIAEMIGGGV 103
>CLOCK_DROME (O61735) Circadian locomoter output cycles protein kaput (dCLOCK)| (dPAS1) Length = 1027 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Frame = +1 Query: 223 TLLANVLYSL--EYLALVPSADRA---RASKLTASGNCSNTPFISSKPISA 360 TLL N L SL E A P+ D + AS + SG+C P +S+P S+ Sbjct: 427 TLLGNSLASLGTETAATSPAVDSSPMWSASAVQPSGSCQINPLKTSRPASS 477
>TRUA_DESVH (Q72DL8) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 297 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = -3 Query: 356 EMGFEEMKGVFEQLPEAVSLLALARSADGTRARYSRL 246 ++G + K + QLP+ + +L + R+AD AR+ L Sbjct: 75 KLGVDWQKAINAQLPDDICILDVRRAADDFHARFDAL 111
>HRCA_BIFLO (Q8G6C7) Heat-inducible transcription repressor hrcA| Length = 372 Score = 28.1 bits (61), Expect = 5.4 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 6/66 (9%) Frame = -3 Query: 368 SVLAEMGFEEMKGVFEQLPEAVSLLALARSAD-----GT-RARYSRLYRTLASKVPALKE 207 S+ A G+E ++GV + L +A +AL A+ GT +SR LA AL+E Sbjct: 198 SIAASAGYESVRGVADTLADAFESMALDERANELYMSGTSHLAHSRSLADLAPLFDALEE 257 Query: 206 IVAEME 189 V M+ Sbjct: 258 QVVLMK 263
>SIM1_MOUSE (Q61045) Single-minded homolog 1 (mSIM1)| Length = 765 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = +1 Query: 238 VLYSLEYLALVPSADRARASKLTASGNCSNTPFISSKPISART 366 VL EY L S D+ ASK T S S+TP IS A++ Sbjct: 331 VLTDTEYKGLQLSLDQISASKPTFSYTSSSTPTISDNRKGAKS 373
>PSMR_ARCFU (O28303) Proteasome-activating nucleotidase (Proteasome regulatory| subunit) Length = 398 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = -3 Query: 374 RPSVLAEMGFEEMKGVFEQLPEAVSLLALARS-ADGTRARYSRL 246 +P + AE+G E KGV P LA++ A+ TRA + R+ Sbjct: 163 KPELFAEVGIEPPKGVLLYGPPGTGKTLLAKAVANQTRATFIRV 206
>TRUA_STRCO (O86776) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 284 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/53 (33%), Positives = 29/53 (54%) Frame = -3 Query: 380 VPRPSVLAEMGFEEMKGVFEQLPEAVSLLALARSADGTRARYSRLYRTLASKV 222 +PR V AE + +K + +LP V + AL + G AR+S ++R A +V Sbjct: 77 LPR-EVWAEHHVKLLKRLAGRLPRDVRVWALREAPSGFNARFSAVWRRYAYRV 128
>UQCR2_RAT (P32551) Ubiquinol-cytochrome-c reductase complex core protein 2,| mitochondrial precursor (EC 1.10.2.2) (Complex III subunit II) Length = 452 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 8/38 (21%) Frame = +1 Query: 250 LEYLALVPSADRARASK--------LTASGNCSNTPFI 339 L+ + V AD +A+K +TASGN NTPF+ Sbjct: 412 LQQIDAVADADVVKAAKKFVSGKKSMTASGNLGNTPFL 449
>RAP_TAROF (O49065) Root allergen protein (RAP)| Length = 157 Score = 27.3 bits (59), Expect = 9.2 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 3/100 (3%) Frame = +1 Query: 85 KRLHGTPSNASIYNITYNYKM---N*HYDLTSLKTPPLSISATISFKAGTLLANVLYSLE 255 K + G +I +ITY+ + + + + ++ + SIS TI F+ L+ + Sbjct: 41 KTIEGDGGVGTIKSITYSDGVPFTSSKHKVDAIDSNNFSISYTI-FEGDVLMGIIESGTH 99 Query: 256 YLALVPSADRARASKLTASGNCSNTPFISSKPISARTDGL 375 +L +PSAD K + C ++ + +S +GL Sbjct: 100 HLKFLPSADGGSVYKHSMVFKCKGDAKLTDENVSLMKEGL 139 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,778,162 Number of Sequences: 219361 Number of extensions: 1068793 Number of successful extensions: 2674 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 2612 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2674 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)