Clone Name | rbasd21d20 |
---|---|
Clone Library Name | barley_pub |
>WDR67_XENLA (Q6DDI6) WD-repeat protein 67| Length = 1089 Score = 32.7 bits (73), Expect = 0.79 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Frame = -3 Query: 259 HLRRSTRGMQSVLEKKGRCWLQGAGAETTTCMSEKNRLIDVTSLTFVICCCVRINLN--M 86 HL +STR +Q+ + G C+L G + D+ T C + NL+ Sbjct: 38 HLSKSTRFLQAAFDSAGDCFLAGDHLGNVYMFNLNRNRFDLVQKTMQACTAIAFNLHRKT 97 Query: 85 FFLVSLS 65 FLV+L+ Sbjct: 98 EFLVALA 104
>YB03_SCHPO (P87145) Hypothetical protein C25H2.03 in chromosome II| Length = 811 Score = 32.3 bits (72), Expect = 1.0 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = +2 Query: 218 LQNRLHASSAPP*MDLLANDRMPRALLLDKFWLSFINTM 334 L++RL SS P +LAN+R+PR+ D +W + + Sbjct: 698 LRDRLQCSSTPRTNTILANERLPRSRRDDPYWTDLLERL 736
>YAD1_YEAST (P39732) Protein YAL031C| Length = 760 Score = 30.8 bits (68), Expect = 3.0 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%) Frame = +1 Query: 382 SCSHNSSRQLCMMHYDVIL----SERGSLSNPKPDLDHINGLVNWQWL*HRVLMSHLQMS 549 SC H+ + +Y+ + + SLSN + DL H W+W HR+ HL++ Sbjct: 235 SCVHSKIFPILRTYYNQLQKFSETRPTSLSNLQKDLPH------WEWTLHRIYTFHLRVF 288 Query: 550 SFL 558 S L Sbjct: 289 SVL 291
>AMPM_CHLTR (O84859) Methionine aminopeptidase (EC 3.4.11.18) (MAP) (Peptidase| M) Length = 291 Score = 30.4 bits (67), Expect = 3.9 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = -3 Query: 454 MSLFQRELHHNASYIVAWMNYGNKMPHLLSCCVD*NKFITHGV 326 + L RELH + I A +NYG+ P + C N+ I HG+ Sbjct: 79 LDLLSRELHKRHNAIPAPLNYGHP-PFPKTICTSLNEVICHGI 120
>EDG1_RAT (P48303) Sphingosine 1-phosphate receptor Edg-1 (Sphingosine| 1-phosphate receptor 1) (S1P1) Length = 383 Score = 30.0 bits (66), Expect = 5.1 Identities = 16/40 (40%), Positives = 25/40 (62%) Frame = -3 Query: 160 EKNRLIDVTSLTFVICCCVRINLNMFFLVSLSIFFRDKLH 41 EK+ I +TS+ F++ CC+ I N+F L L+I+ K H Sbjct: 41 EKDHGIKLTSVVFILICCLIILENIFVL--LTIWKTKKFH 78
>AGO1_ARATH (O04379) Argonaute protein| Length = 1048 Score = 30.0 bits (66), Expect = 5.1 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = -1 Query: 396 IMGTRCPTCYHVVWIKTNLSPMVFIKLSQNLSRRSARGMRSLA 268 I GT P YHV+W + N + L+ NL AR RS++ Sbjct: 935 IQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVS 977
>PINH_ARATH (Q9XGW1) PINHEAD protein (ZWILLE protein)| Length = 988 Score = 30.0 bits (66), Expect = 5.1 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = -1 Query: 396 IMGTRCPTCYHVVWIKTNLSPMVFIKLSQNLSRRSARGMRSLA 268 I GT P YHV+W + N + L+ NL AR RS++ Sbjct: 884 IQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVS 926
>EDG1_MOUSE (O08530) Sphingosine 1-phosphate receptor Edg-1 (Sphingosine| 1-phosphate receptor 1) (S1P1) (Lysophospholipid receptor B1) Length = 382 Score = 29.6 bits (65), Expect = 6.7 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = -3 Query: 163 SEKNRLIDVTSLTFVICCCVRINLNMFFLVSLSIFFRDKLH 41 +EK+ I +TS+ F++ CC I N+F L L+I+ K H Sbjct: 39 AEKDHGIKLTSVVFILICCFIILENIFVL--LTIWKTKKFH 77 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,123,061 Number of Sequences: 219361 Number of extensions: 1755904 Number of successful extensions: 4110 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 4004 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4110 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5044307840 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)