ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21d20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WDR67_XENLA (Q6DDI6) WD-repeat protein 67 33 0.79
2YB03_SCHPO (P87145) Hypothetical protein C25H2.03 in chromosome II 32 1.0
3YAD1_YEAST (P39732) Protein YAL031C 31 3.0
4AMPM_CHLTR (O84859) Methionine aminopeptidase (EC 3.4.11.18) (MA... 30 3.9
5EDG1_RAT (P48303) Sphingosine 1-phosphate receptor Edg-1 (Sphing... 30 5.1
6AGO1_ARATH (O04379) Argonaute protein 30 5.1
7PINH_ARATH (Q9XGW1) PINHEAD protein (ZWILLE protein) 30 5.1
8EDG1_MOUSE (O08530) Sphingosine 1-phosphate receptor Edg-1 (Sphi... 30 6.7

>WDR67_XENLA (Q6DDI6) WD-repeat protein 67|
          Length = 1089

 Score = 32.7 bits (73), Expect = 0.79
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -3

Query: 259 HLRRSTRGMQSVLEKKGRCWLQGAGAETTTCMSEKNRLIDVTSLTFVICCCVRINLN--M 86
           HL +STR +Q+  +  G C+L G         +      D+   T   C  +  NL+   
Sbjct: 38  HLSKSTRFLQAAFDSAGDCFLAGDHLGNVYMFNLNRNRFDLVQKTMQACTAIAFNLHRKT 97

Query: 85  FFLVSLS 65
            FLV+L+
Sbjct: 98  EFLVALA 104



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>YB03_SCHPO (P87145) Hypothetical protein C25H2.03 in chromosome II|
          Length = 811

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 218 LQNRLHASSAPP*MDLLANDRMPRALLLDKFWLSFINTM 334
           L++RL  SS P    +LAN+R+PR+   D +W   +  +
Sbjct: 698 LRDRLQCSSTPRTNTILANERLPRSRRDDPYWTDLLERL 736



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>YAD1_YEAST (P39732) Protein YAL031C|
          Length = 760

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = +1

Query: 382 SCSHNSSRQLCMMHYDVIL----SERGSLSNPKPDLDHINGLVNWQWL*HRVLMSHLQMS 549
           SC H+    +   +Y+ +     +   SLSN + DL H      W+W  HR+   HL++ 
Sbjct: 235 SCVHSKIFPILRTYYNQLQKFSETRPTSLSNLQKDLPH------WEWTLHRIYTFHLRVF 288

Query: 550 SFL 558
           S L
Sbjct: 289 SVL 291



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>AMPM_CHLTR (O84859) Methionine aminopeptidase (EC 3.4.11.18) (MAP) (Peptidase|
           M)
          Length = 291

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 454 MSLFQRELHHNASYIVAWMNYGNKMPHLLSCCVD*NKFITHGV 326
           + L  RELH   + I A +NYG+  P   + C   N+ I HG+
Sbjct: 79  LDLLSRELHKRHNAIPAPLNYGHP-PFPKTICTSLNEVICHGI 120



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>EDG1_RAT (P48303) Sphingosine 1-phosphate receptor Edg-1 (Sphingosine|
           1-phosphate receptor 1) (S1P1)
          Length = 383

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -3

Query: 160 EKNRLIDVTSLTFVICCCVRINLNMFFLVSLSIFFRDKLH 41
           EK+  I +TS+ F++ CC+ I  N+F L  L+I+   K H
Sbjct: 41  EKDHGIKLTSVVFILICCLIILENIFVL--LTIWKTKKFH 78



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>AGO1_ARATH (O04379) Argonaute protein|
          Length = 1048

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 396  IMGTRCPTCYHVVWIKTNLSPMVFIKLSQNLSRRSARGMRSLA 268
            I GT  P  YHV+W + N +      L+ NL    AR  RS++
Sbjct: 935  IQGTSRPAHYHVLWDENNFTADGLQSLTNNLCYTYARCTRSVS 977



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>PINH_ARATH (Q9XGW1) PINHEAD protein (ZWILLE protein)|
          Length = 988

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 396  IMGTRCPTCYHVVWIKTNLSPMVFIKLSQNLSRRSARGMRSLA 268
            I GT  P  YHV+W + N +      L+ NL    AR  RS++
Sbjct: 884  IQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVS 926



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>EDG1_MOUSE (O08530) Sphingosine 1-phosphate receptor Edg-1 (Sphingosine|
           1-phosphate receptor 1) (S1P1) (Lysophospholipid
           receptor B1)
          Length = 382

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -3

Query: 163 SEKNRLIDVTSLTFVICCCVRINLNMFFLVSLSIFFRDKLH 41
           +EK+  I +TS+ F++ CC  I  N+F L  L+I+   K H
Sbjct: 39  AEKDHGIKLTSVVFILICCFIILENIFVL--LTIWKTKKFH 77


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,123,061
Number of Sequences: 219361
Number of extensions: 1755904
Number of successful extensions: 4110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4110
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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