Clone Name | rbasd21d20 |
---|---|
Clone Library Name | barley_pub |
>emb|AL590131.8| Human DNA sequence from clone RP13-102H20 on chromosome X Contains gene FLJ30058, the 5' end of a novel gene and four CpG islands, complete sequence Length = 146343 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 186 ccagcaccctgcaaccagcacc 207 |||||||||||||||||||||| Sbjct: 47524 ccagcaccctgcaaccagcacc 47503
>gb|AC169378.2| Sorghum bicolor clone SB_BBc0007L02, complete sequence Length = 138518 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 355 ccacacaacatgataacaagtgggg 379 |||||||||||||||| |||||||| Sbjct: 79934 ccacacaacatgataataagtgggg 79958
>ref|XM_451529.1| Kluyveromyces lactis NRRL Y-1140, KLLA0A12144g predicted mRNA Length = 3117 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 cttcttctccagaaccgattg 232 ||||||||||||||||||||| Sbjct: 704 cttcttctccagaaccgattg 724
>emb|CR382121.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome A of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1062590 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 212 cttcttctccagaaccgattg 232 ||||||||||||||||||||| Sbjct: 1057559 cttcttctccagaaccgattg 1057539
>dbj|AK090144.1| Mus musculus 16 days neonate male medulla oblongata cDNA, RIKEN full-length enriched library, clone:G630005F21 product:unclassifiable, full insert sequence Length = 2942 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 341 aaatttgttttaatccacaca 361 ||||||||||||||||||||| Sbjct: 1454 aaatttgttttaatccacaca 1434
>gb|AC112267.4| Mus musculus BAC clone RP24-84L8 from 9, complete sequence Length = 188376 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 341 aaatttgttttaatccacaca 361 ||||||||||||||||||||| Sbjct: 145513 aaatttgttttaatccacaca 145533
>gb|AC132422.3| Mus musculus BAC clone RP23-302G15 from 12, complete sequence Length = 151358 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 339 ataaatttgttttaatccaca 359 ||||||||||||||||||||| Sbjct: 116622 ataaatttgttttaatccaca 116602
>gb|AC148005.3| Mus musculus BAC clone RP23-295O6 from 12, complete sequence Length = 151918 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 339 ataaatttgttttaatccaca 359 ||||||||||||||||||||| Sbjct: 1709 ataaatttgttttaatccaca 1729
>emb|AJ439548.1|KLA439548 Kluyveromyces lactis LTR-retrotransposon Tkl1.1 Length = 5425 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 cttcttctccagaaccgattg 232 ||||||||||||||||||||| Sbjct: 2708 cttcttctccagaaccgattg 2728
>gb|AC129899.1| Ciona savignyi, clone XX-1073157C8, complete sequence Length = 38548 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 309 tttggctaagctttataaacacca 332 ||||||||||||||||||| |||| Sbjct: 36479 tttggctaagctttataaaaacca 36456
>gb|AC166079.2| Mus musculus BAC clone RP23-51L15 from chromosome 7, complete sequence Length = 193749 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 cagatgacaaaggtgaggga 133 |||||||||||||||||||| Sbjct: 392 cagatgacaaaggtgaggga 373
>gb|DQ119106.1| Rattus norvegicus mRNA stabilizer 2b1 splice variant mRNA, complete cds, alternatively spliced Length = 2926 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 acacaacagcagatgacaaa 124 |||||||||||||||||||| Sbjct: 2482 acacaacagcagatgacaaa 2463
>gb|AC120085.5| Rattus norvegicus 10 BAC CH230-490B8 (Children's Hospital Oakland Research Institute) complete sequence Length = 157493 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 acacaacagcagatgacaaa 124 |||||||||||||||||||| Sbjct: 4881 acacaacagcagatgacaaa 4862
>gb|AC112789.4| Mus musculus BAC clone RP23-151J21 from chromosome 7, complete sequence Length = 200592 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 cagatgacaaaggtgaggga 133 |||||||||||||||||||| Sbjct: 50936 cagatgacaaaggtgaggga 50917
>gb|AC109271.10| Mus musculus chromosome 1, clone RP23-353I19, complete sequence Length = 221001 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 gcaaccagcacctccccttc 215 |||||||||||||||||||| Sbjct: 179486 gcaaccagcacctccccttc 179505
>emb|BX927107.9| Zebrafish DNA sequence from clone CH211-281H20 in linkage group 7, complete sequence Length = 135772 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 ttgttttaatccacacaaca 364 |||||||||||||||||||| Sbjct: 78677 ttgttttaatccacacaaca 78696
>gb|AC123929.4| Mus musculus BAC clone RP24-434E14 from chromosome 12, complete sequence Length = 166035 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 acaacatgataacaagtggg 378 |||||||||||||||||||| Sbjct: 95813 acaacatgataacaagtggg 95794
>gb|AC122252.4| Mus musculus BAC clone RP23-170E7 from chromosome 17, complete sequence Length = 219695 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 ccccttcttctccagaaccg 228 |||||||||||||||||||| Sbjct: 146173 ccccttcttctccagaaccg 146192
>gb|AC123861.4| Mus musculus BAC clone RP23-351E20 from chromosome 2, complete sequence Length = 198454 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 attctccacatatgctgctt 34 |||||||||||||||||||| Sbjct: 4734 attctccacatatgctgctt 4753
>gb|AC122256.3| Mus musculus BAC clone RP23-178H7 from 7, complete sequence Length = 183325 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 cagatgacaaaggtgaggga 133 |||||||||||||||||||| Sbjct: 89408 cagatgacaaaggtgaggga 89389
>gb|AC122246.5| Mus musculus BAC clone RP23-152K13 from 1, complete sequence Length = 203739 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 cacaacagcagatgacaaag 125 |||||||||||||||||||| Sbjct: 114305 cacaacagcagatgacaaag 114286
>gb|AC122287.4| Mus musculus BAC clone RP23-253A15 from 1, complete sequence Length = 226926 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 gcaaccagcacctccccttc 215 |||||||||||||||||||| Sbjct: 200788 gcaaccagcacctccccttc 200769
>emb|BX321878.4| Human DNA sequence from clone XXyac-13CF11 on chromosome 1, complete sequence Length = 60721 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 200 ccagcacctccccttcttctccag 223 |||||||| ||||||||||||||| Sbjct: 33644 ccagcaccaccccttcttctccag 33621
>emb|AL139333.10| Human DNA sequence from clone RP11-536I19 on chromosome 6 Contains the 3' end of a novel gene, the 5' part of a novel gene similar to C21ORF5 (KIAA0933) and a CpG island, complete sequence Length = 98444 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 306 aattttggctaagctttataaaca 329 |||||||||||||||| ||||||| Sbjct: 77258 aattttggctaagcttcataaaca 77235
>emb|Y00309.1|MMLDHAG Mouse LDH-A gene for lactate dehydrogenase-A Length = 12851 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 tccagcaccctgcaaccagc 204 |||||||||||||||||||| Sbjct: 1817 tccagcaccctgcaaccagc 1836
>emb|X03753.1|MMALDH1 Mouse LDH-A gene for lactate dehydrogenase A (exons 1-2) Length = 3157 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 tccagcaccctgcaaccagc 204 |||||||||||||||||||| Sbjct: 238 tccagcaccctgcaaccagc 257
>emb|AJ345076.2|HLA345076 Hylobates lar mRNA for TGIF-like protein on the X (tgiflx gene) Length = 856 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 204 cacctccccttcttctccagaacc 227 ||||||||| |||||||||||||| Sbjct: 721 cacctccccgtcttctccagaacc 744
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 461 atccaaaacctgatcttgac 480 |||||||||||||||||||| Sbjct: 1929081 atccaaaacctgatcttgac 1929100
>gb|AC090123.68| Mus musculus strain C57BL/6J clone rp23-323l3 map 7, complete sequence Length = 223438 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 tccagcaccctgcaaccagc 204 |||||||||||||||||||| Sbjct: 132469 tccagcaccctgcaaccagc 132450
>dbj|AB232918.1| Oryzias latipes hox gene cluster, complete cds Length = 268959 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 agtgctcctccttagatgga 261 |||||||||||||||||||| Sbjct: 24363 agtgctcctccttagatgga 24344
>gb|AC129883.3| Ornithorhynchus anatinus clone OA_Bb-305F19, complete sequence Length = 181157 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 agcacctccccttcttctcc 221 |||||||||||||||||||| Sbjct: 25814 agcacctccccttcttctcc 25833
>ref|XM_573911.1| PREDICTED: Rattus norvegicus similar to BH3-only member B protein (LOC498630), mRNA Length = 7165 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ctcagacatgcatgtggtcg 177 |||||||||||||||||||| Sbjct: 945 ctcagacatgcatgtggtcg 964 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ctcagacatgcatgtggtcg 177 |||||||||||||||||||| Sbjct: 897 ctcagacatgcatgtggtcg 916 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ctcagacatgcatgtggtcg 177 |||||||||||||||||||| Sbjct: 849 ctcagacatgcatgtggtcg 868
>emb|BX323808.7| Zebrafish DNA sequence from clone DKEY-117N4, complete sequence Length = 152686 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 ttgttttaatccacacaaca 364 |||||||||||||||||||| Sbjct: 79118 ttgttttaatccacacaaca 79137
>emb|AL929018.14| Mouse DNA sequence from clone RP23-253K17 on chromosome 2, complete sequence Length = 189343 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 attctccacatatgctgctt 34 |||||||||||||||||||| Sbjct: 83100 attctccacatatgctgctt 83119
>emb|CR626877.10| Zebrafish DNA sequence from clone DKEYP-114F9 in linkage group 19, complete sequence Length = 173824 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 aattttggctaagctttata 325 |||||||||||||||||||| Sbjct: 77772 aattttggctaagctttata 77753
>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome Length = 1992676 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 catatgctgcttcaattaat 42 |||||||||||||||||||| Sbjct: 1374914 catatgctgcttcaattaat 1374895
>gb|AC164564.3| Mus musculus BAC clone RP23-96N11 from chromosome 7, complete sequence Length = 247415 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 114 cagatgacaaaggtgaggga 133 |||||||||||||||||||| Sbjct: 71442 cagatgacaaaggtgaggga 71423 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 cagatgacaaaggtgaggga 133 |||||||||||||||||||| Sbjct: 41503 cagatgacaaaggtgaggga 41522
>gb|M95497.1|RTUPOLYP Rice tungro spherical virus polyprotein gene, complete cds Length = 12226 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 atccgcacacaacagcagat 118 |||||||||||||||||||| Sbjct: 11195 atccgcacacaacagcagat 11214
>emb|AL359237.4|CNS05TEO Human chromosome 14 DNA sequence BAC R-1152H15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 162119 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 atttgttttaatccacacaa 362 |||||||||||||||||||| Sbjct: 38672 atttgttttaatccacacaa 38691
>emb|AL158059.3|CNS01RGK Human chromosome 14 DNA sequence BAC C-2007A10 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 148515 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 atttgttttaatccacacaa 362 |||||||||||||||||||| Sbjct: 8491 atttgttttaatccacacaa 8472
>gb|U05674.1|RNU05674 Rattus norvegicus Sprague Dawley lactate dehydrogenase A subunit gene, promoter region Length = 1192 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 tccagcaccctgcaaccagc 204 |||||||||||||||||||| Sbjct: 281 tccagcaccctgcaaccagc 300 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,385,916 Number of Sequences: 3902068 Number of extensions: 5385916 Number of successful extensions: 106372 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 106263 Number of HSP's gapped (non-prelim): 109 length of query: 585 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 562 effective length of database: 17,143,297,704 effective search space: 9634533309648 effective search space used: 9634533309648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)