Clone Name | rbasd20o15 |
---|---|
Clone Library Name | barley_pub |
>RYR1_HUMAN (P21817) Ryanodine receptor 1 (Skeletal muscle-type ryanodine| receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release channel) Length = 5038 Score = 28.9 bits (63), Expect = 4.0 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +3 Query: 9 PALEPDLAEGERXEQTQVPRHQPQP 83 P LEP+ A+ E E+ +VP P+P Sbjct: 4497 PELEPEKADAENGEKEEVPEPTPEP 4521
>GID2_ORYSA (Q7XAK4) F-box protein GID2 (Gibberellin-insensitive dwarf protein| 2) (Protein GIBBERELLIN INSENSITIVE DWARF2) Length = 212 Score = 28.1 bits (61), Expect = 6.8 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Frame = +3 Query: 30 AEGERXEQTQVPRHQPQPELPLESRGRGE---VGELLADAXXXEPRQAVAR 173 ++GE +Q P Q Q E P E G GE V +L D R+A AR Sbjct: 41 SQGEASSSSQPPPQQQQEEQPPEDAGEGEQPRVPDLGEDLVFEVLRRAEAR 91
>MAGI2_RAT (O88382) Membrane-associated guanylate kinase, WW and PDZ| domain-containing protein 2 (Membrane-associated guanylate kinase inverted 2) (MAGI-2) (Atrophin-1-interacting protein 1) (Synaptic scaffolding molecule) (S-SCAM) Length = 1277 Score = 28.1 bits (61), Expect = 6.8 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = -3 Query: 165 QLDGALXXQHRPGARPLPLAPGSPVA 88 Q L QH P A+P P P SPVA Sbjct: 1029 QQHSPLAQQHSPLAQPSPATPNSPVA 1054
>SALL3_HUMAN (Q9BXA9) Sal-like protein 3 (Zinc finger protein SALL3) (hSALL3)| Length = 1300 Score = 28.1 bits (61), Expect = 6.8 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -3 Query: 132 PGARPLPLAPGSPVAVLAVVGDVAPGS 52 PG LPL+ G+P A +A G AP + Sbjct: 259 PGLAALPLSAGAPAAAIAGSGPAAPAA 285
>S6A15_HUMAN (Q9H2J7) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT73 (Orphan transporter v7-3) (Solute carrier family 6 member 15) Length = 730 Score = 27.7 bits (60), Expect = 8.8 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -1 Query: 158 TGLXXXSIGQELAHFPSPPALQWQFWLWLVTWHLG 54 TGL + + + HFP+ P F+L LV LG Sbjct: 439 TGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLG 473
>TROAP_HUMAN (Q12815) Trophinin-associated protein (Tastin) (Trophinin-assisting| protein) Length = 778 Score = 27.7 bits (60), Expect = 8.8 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = +3 Query: 15 LEPDLAEGERXEQTQVPRHQPQPEL-PLESRGRGEVG 122 +EP++ E R EQ +VP P E PL+ +G+ G Sbjct: 595 IEPEIPESSRQEQLEVPEPCPPAEPGPLQPSTQGQSG 631
>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein| kinase with no lysine 2) (Protein kinase, lysine-deficient 2) Length = 2297 Score = 27.7 bits (60), Expect = 8.8 Identities = 15/39 (38%), Positives = 17/39 (43%) Frame = -3 Query: 168 QQLDGALXXQHRPGARPLPLAPGSPVAVLAVVGDVAPGS 52 QQL + PGA P PLAP SP AP + Sbjct: 1402 QQLLSQAGPSNPPGAPPAPLAPSSPPVTALPQDGAAPAT 1440
>S6A15_BOVIN (Q9XS59) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT73 (Orphan transporter v7-3) (Solute carrier family 6 member 15) Length = 729 Score = 27.7 bits (60), Expect = 8.8 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -1 Query: 158 TGLXXXSIGQELAHFPSPPALQWQFWLWLVTWHLG 54 TGL + + + HFP+ P F+L LV LG Sbjct: 439 TGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLG 473 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.130 0.495 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,207,129 Number of Sequences: 219361 Number of extensions: 383453 Number of successful extensions: 1736 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 1684 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1735 length of database: 80,573,946 effective HSP length: 34 effective length of database: 73,115,672 effective search space used: 1754776128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)