ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20o15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RYR1_HUMAN (P21817) Ryanodine receptor 1 (Skeletal muscle-type r... 29 4.0
2GID2_ORYSA (Q7XAK4) F-box protein GID2 (Gibberellin-insensitive ... 28 6.8
3MAGI2_RAT (O88382) Membrane-associated guanylate kinase, WW and ... 28 6.8
4SALL3_HUMAN (Q9BXA9) Sal-like protein 3 (Zinc finger protein SAL... 28 6.8
5S6A15_HUMAN (Q9H2J7) Orphan sodium- and chloride-dependent neuro... 28 8.8
6TROAP_HUMAN (Q12815) Trophinin-associated protein (Tastin) (Trop... 28 8.8
7WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7... 28 8.8
8S6A15_BOVIN (Q9XS59) Orphan sodium- and chloride-dependent neuro... 28 8.8

>RYR1_HUMAN (P21817) Ryanodine receptor 1 (Skeletal muscle-type ryanodine|
            receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release
            channel)
          Length = 5038

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 9    PALEPDLAEGERXEQTQVPRHQPQP 83
            P LEP+ A+ E  E+ +VP   P+P
Sbjct: 4497 PELEPEKADAENGEKEEVPEPTPEP 4521



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>GID2_ORYSA (Q7XAK4) F-box protein GID2 (Gibberellin-insensitive dwarf protein|
           2) (Protein GIBBERELLIN INSENSITIVE DWARF2)
          Length = 212

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 30  AEGERXEQTQVPRHQPQPELPLESRGRGE---VGELLADAXXXEPRQAVAR 173
           ++GE    +Q P  Q Q E P E  G GE   V +L  D      R+A AR
Sbjct: 41  SQGEASSSSQPPPQQQQEEQPPEDAGEGEQPRVPDLGEDLVFEVLRRAEAR 91



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>MAGI2_RAT (O88382) Membrane-associated guanylate kinase, WW and PDZ|
            domain-containing protein 2 (Membrane-associated
            guanylate kinase inverted 2) (MAGI-2)
            (Atrophin-1-interacting protein 1) (Synaptic scaffolding
            molecule) (S-SCAM)
          Length = 1277

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 165  QLDGALXXQHRPGARPLPLAPGSPVA 88
            Q    L  QH P A+P P  P SPVA
Sbjct: 1029 QQHSPLAQQHSPLAQPSPATPNSPVA 1054



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>SALL3_HUMAN (Q9BXA9) Sal-like protein 3 (Zinc finger protein SALL3) (hSALL3)|
          Length = 1300

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 132 PGARPLPLAPGSPVAVLAVVGDVAPGS 52
           PG   LPL+ G+P A +A  G  AP +
Sbjct: 259 PGLAALPLSAGAPAAAIAGSGPAAPAA 285



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>S6A15_HUMAN (Q9H2J7) Orphan sodium- and chloride-dependent neurotransmitter|
           transporter NTT73 (Orphan transporter v7-3) (Solute
           carrier family 6 member 15)
          Length = 730

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 158 TGLXXXSIGQELAHFPSPPALQWQFWLWLVTWHLG 54
           TGL   +  + + HFP+ P     F+L LV   LG
Sbjct: 439 TGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLG 473



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>TROAP_HUMAN (Q12815) Trophinin-associated protein (Tastin) (Trophinin-assisting|
           protein)
          Length = 778

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 15  LEPDLAEGERXEQTQVPRHQPQPEL-PLESRGRGEVG 122
           +EP++ E  R EQ +VP   P  E  PL+   +G+ G
Sbjct: 595 IEPEIPESSRQEQLEVPEPCPPAEPGPLQPSTQGQSG 631



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>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein|
            kinase with no lysine 2) (Protein kinase,
            lysine-deficient 2)
          Length = 2297

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -3

Query: 168  QQLDGALXXQHRPGARPLPLAPGSPVAVLAVVGDVAPGS 52
            QQL       + PGA P PLAP SP          AP +
Sbjct: 1402 QQLLSQAGPSNPPGAPPAPLAPSSPPVTALPQDGAAPAT 1440



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>S6A15_BOVIN (Q9XS59) Orphan sodium- and chloride-dependent neurotransmitter|
           transporter NTT73 (Orphan transporter v7-3) (Solute
           carrier family 6 member 15)
          Length = 729

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 158 TGLXXXSIGQELAHFPSPPALQWQFWLWLVTWHLG 54
           TGL   +  + + HFP+ P     F+L LV   LG
Sbjct: 439 TGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLG 473


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.130    0.495 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,207,129
Number of Sequences: 219361
Number of extensions: 383453
Number of successful extensions: 1736
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1735
length of database: 80,573,946
effective HSP length: 34
effective length of database: 73,115,672
effective search space used: 1754776128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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