ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20o15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472416.1| Oryza sativa (japonica cultivar-group), predic... 178 4e-42
2dbj|AK059990.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 4e-42
3dbj|AK058848.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 4e-42
4gb|AY105449.1| Zea mays PCO139896 mRNA sequence 149 3e-33
5emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4,... 117 1e-23
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 117 1e-23
7gb|AC021744.14| Homo sapiens chromosome 8, clone RP11-284H18, co... 40 2.2
8gb|AC021636.16| Homo sapiens chromosome 8, clone RP11-637F16, co... 40 2.2
9gb|AC105065.13| Mus musculus chromosome 18, clone RP24-459E1, co... 40 2.2
10emb|CT009690.15| Pig DNA sequence from clone CH242-207C21 on chr... 40 2.2
11gb|AC125210.4| Mus musculus BAC clone RP23-148P22 from 18, compl... 40 2.2
12gb|AY780558.1| Uncultured spirochete clone KB-1 16S ribosomal RN... 38 8.6
13ref|NM_001031218.1| Gallus gallus tetraspanin 14 (TSPAN14), mRNA 38 8.6
14ref|XM_525917.1| PREDICTED: Pan troglodytes similar to hypotheti... 38 8.6
15ref|XM_476685.1| Oryza sativa (japonica cultivar-group), mRNA 38 8.6
16gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 38 8.6
17gb|AY327232.1| Uncultured bacterium clone ZB41 16S ribosomal RNA... 38 8.6
18emb|AL358593.22| Human DNA sequence from clone RP11-473A10 on ch... 38 8.6
19gb|AC011726.11| Homo sapiens chromosome , clone RP11-14I17, comp... 38 8.6
20emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2 38 8.6
21gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 38 8.6
22emb|AJ719658.1| Gallus gallus mRNA for hypothetical protein, clo... 38 8.6
23gb|DQ099068.1| Arachis stenosperma clone AS2ML1G04 microsatellit... 38 8.6
24gb|DQ093944.1| Uncultured bacterium clone ga81 16S ribosomal RNA... 38 8.6
25dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 38 8.6
26dbj|AK128403.1| Homo sapiens cDNA FLJ46546 fis, clone THYMU3038214 38 8.6
27dbj|AK095696.1| Homo sapiens cDNA FLJ38377 fis, clone FEBRA2002781 38 8.6
28gb|AE011817.1| Xanthomonas axonopodis pv. citri str. 306, secti... 38 8.6
29gb|AE012285.1| Xanthomonas campestris pv. campestris str. ATCC 3... 38 8.6
30emb|CR524257.1| Gallus gallus finished cDNA, clone ChEST1006b2 38 8.6
31gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 38 8.6
32gb|AF334400.1|AF334400 Homo sapiens Vps39/Vam6-like protein gene... 38 8.6
33dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.6
34dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.6
35gb|AC010984.7| Homo sapiens BAC clone RP11-510C1 from 2, complet... 38 8.6
36ref|NM_152698.1| Homo sapiens hypothetical protein FLJ38377 (FLJ... 38 8.6
37gb|AC022468.5|AC022468 Homo sapiens chromosome 15 clone RP11-546... 38 8.6
38gb|AC036103.8|AC036103 Homo sapiens chromosome 15 clone CTD-2610... 38 8.6
39gb|AC140481.3| Homo sapiens BAC clone RP11-1216L17 from 2, compl... 38 8.6
40gb|AC092602.2| Homo sapiens BAC clone RP11-134G21 from 2, comple... 38 8.6
41dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 38 8.6
42dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic D... 38 8.6
43dbj|AK109368.3| Oryza sativa (japonica cultivar-group) cDNA clon... 38 8.6
44dbj|AK073310.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 8.6
45dbj|AK069916.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 8.6
46dbj|AK064238.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 8.6
47dbj|AK061376.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 8.6
48dbj|AK061171.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 8.6
49gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 38 8.6
50gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 38 8.6
51gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 8.6
52emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536... 38 8.6
53emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510... 38 8.6
54emb|AL845502.5| Mouse DNA sequence from clone RP23-395A21 on chr... 38 8.6 
>ref|XM_472416.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 429

 Score =  178 bits (90), Expect = 4e-42
 Identities = 127/140 (90%)
 Strand = Plus / Minus

                                                                       
Query: 2   cctcggtcctgccctngaacccgatctggccgaaggtgagcgcgntgaacagacccaggt 61
           ||||||||||||||| |||||||||||||||||||||||||||   |||||| || ||||
Sbjct: 412 cctcggtcctgcccttgaacccgatctggccgaaggtgagcgccaggaacagcccaaggt 353

                                                                       
Query: 62  gccacgtcaccaaccacagccagaactgccactggagagccgggggcgaggggaagtggg 121
           |||||||||||||||||||||||||| || | | ||| ||||| ||||||||||||||||
Sbjct: 352 gccacgtcaccaaccacagccagaacggcgagtcgagcgccggcggcgaggggaagtggg 293

                               
Query: 122 cgagctcctggccgatgctg 141
            |||||||||||||||||||
Sbjct: 292 agagctcctggccgatgctg 273
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>dbj|AK059990.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-A12, full
            insert sequence
          Length = 1192

 Score =  178 bits (90), Expect = 4e-42
 Identities = 127/140 (90%)
 Strand = Plus / Minus

                                                                        
Query: 2    cctcggtcctgccctngaacccgatctggccgaaggtgagcgcgntgaacagacccaggt 61
            ||||||||||||||| |||||||||||||||||||||||||||   |||||| || ||||
Sbjct: 1009 cctcggtcctgcccttgaacccgatctggccgaaggtgagcgccaggaacagcccaaggt 950

                                                                        
Query: 62   gccacgtcaccaaccacagccagaactgccactggagagccgggggcgaggggaagtggg 121
            |||||||||||||||||||||||||| || | | ||| ||||| ||||||||||||||||
Sbjct: 949  gccacgtcaccaaccacagccagaacggcgagtcgagcgccggcggcgaggggaagtggg 890

                                
Query: 122  cgagctcctggccgatgctg 141
             |||||||||||||||||||
Sbjct: 889  agagctcctggccgatgctg 870
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>dbj|AK058848.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-G12, full
           insert sequence
          Length = 645

 Score =  178 bits (90), Expect = 4e-42
 Identities = 127/140 (90%)
 Strand = Plus / Minus

                                                                       
Query: 2   cctcggtcctgccctngaacccgatctggccgaaggtgagcgcgntgaacagacccaggt 61
           ||||||||||||||| |||||||||||||||||||||||||||   |||||| || ||||
Sbjct: 481 cctcggtcctgcccttgaacccgatctggccgaaggtgagcgccaggaacagcccaaggt 422

                                                                       
Query: 62  gccacgtcaccaaccacagccagaactgccactggagagccgggggcgaggggaagtggg 121
           |||||||||||||||||||||||||| || | | ||| ||||| ||||||||||||||||
Sbjct: 421 gccacgtcaccaaccacagccagaacggcgagtcgagcgccggcggcgaggggaagtggg 362

                               
Query: 122 cgagctcctggccgatgctg 141
            |||||||||||||||||||
Sbjct: 361 agagctcctggccgatgctg 342
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>gb|AY105449.1| Zea mays PCO139896 mRNA sequence
          Length = 911

 Score =  149 bits (75), Expect = 3e-33
 Identities = 124/141 (87%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctcggtcctgccctngaacccgatctggccgaaggtgagcgcgntgaacagacccagg 60
           |||||||||||||||| ||| ||||||||||||||||||||| || ||||||| ||||||
Sbjct: 695 tcctcggtcctgcccttgaatccgatctggccgaaggtgagcacgatgaacaggcccagg 636

                                                                       
Query: 61  tgccacgtcaccaaccacagccagaactgccactggagagccgggggcgaggggaagtgg 120
           ||||||||||| | |||||||||||||||  |   ||  | |||||||| ||||||||||
Sbjct: 635 tgccacgtcactagccacagccagaactgggaggtgacgggcgggggcgtggggaagtgg 576

                                
Query: 121 gcgagctcctggccgatgctg 141
           || ||||||||||||||||||
Sbjct: 575 gccagctcctggccgatgctg 555
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>emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991214_12,
             complete sequence
          Length = 116952

 Score =  117 bits (59), Expect = 1e-23
 Identities = 75/81 (92%)
 Strand = Plus / Minus

                                                                         
Query: 2     cctcggtcctgccctngaacccgatctggccgaaggtgagcgcgntgaacagacccaggt 61
             ||||||||||||||| |||||||||||||||||||||||||||   |||||| || ||||
Sbjct: 16466 cctcggtcctgcccttgaacccgatctggccgaaggtgagcgccaggaacagcccaaggt 16407

                                  
Query: 62    gccacgtcaccaaccacagcc 82
             |||||||||||||||||||||
Sbjct: 16406 gccacgtcaccaaccacagcc 16386



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                       
Query: 100   gccgggggcgaggggaagtgggcgagctcctggccgatgctg 141
             ||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 16252 gccggcggcgaggggaagtgggagagctcctggccgatgctg 16211
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  117 bits (59), Expect = 1e-23
 Identities = 75/81 (92%)
 Strand = Plus / Minus

                                                                            
Query: 2        cctcggtcctgccctngaacccgatctggccgaaggtgagcgcgntgaacagacccaggt 61
                ||||||||||||||| |||||||||||||||||||||||||||   |||||| || ||||
Sbjct: 20505838 cctcggtcctgcccttgaacccgatctggccgaaggtgagcgccaggaacagcccaaggt 20505779

                                     
Query: 62       gccacgtcaccaaccacagcc 82
                |||||||||||||||||||||
Sbjct: 20505778 gccacgtcaccaaccacagcc 20505758



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                          
Query: 100      gccgggggcgaggggaagtgggcgagctcctggccgatgctg 141
                ||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 20505624 gccggcggcgaggggaagtgggagagctcctggccgatgctg 20505583
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>gb|AC021744.14| Homo sapiens chromosome 8, clone RP11-284H18, complete sequence
          Length = 175636

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 98   gagccgggggcgaggggaagtggg 121
            |||||||||||||||||| |||||
Sbjct: 4486 gagccgggggcgaggggatgtggg 4463
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>gb|AC021636.16| Homo sapiens chromosome 8, clone RP11-637F16, complete sequence
          Length = 148687

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 98    gagccgggggcgaggggaagtggg 121
             |||||||||||||||||| |||||
Sbjct: 11967 gagccgggggcgaggggatgtggg 11990
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>gb|AC105065.13| Mus musculus chromosome 18, clone RP24-459E1, complete sequence
          Length = 154308

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 104  ggggcgaggggaagtgggcgagctcctg 131
            |||||||||||||| |||||||| ||||
Sbjct: 1709 ggggcgaggggaagggggcgagcacctg 1682
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>emb|CT009690.15| Pig DNA sequence from clone CH242-207C21 on chromosome 7, complete
             sequence
          Length = 94949

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 100   gccgggggcgaggggaagtgggcg 123
             |||||||| |||||||||||||||
Sbjct: 49272 gccgggggggaggggaagtgggcg 49249
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>gb|AC125210.4| Mus musculus BAC clone RP23-148P22 from 18, complete sequence
          Length = 210193

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 104   ggggcgaggggaagtgggcgagctcctg 131
             |||||||||||||| |||||||| ||||
Sbjct: 65637 ggggcgaggggaagggggcgagcacctg 65664
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>gb|AY780558.1| Uncultured spirochete clone KB-1 16S ribosomal RNA gene, partial
           sequence
          Length = 1503

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 120 ggcgagctcctggccgatg 138
           |||||||||||||||||||
Sbjct: 722 ggcgagctcctggccgatg 740
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>ref|NM_001031218.1| Gallus gallus tetraspanin 14 (TSPAN14), mRNA
          Length = 1711

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 77  acagccagaactgccactg 95
           |||||||||||||||||||
Sbjct: 460 acagccagaactgccactg 442
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>ref|XM_525917.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ38377
            (LOC470536), mRNA
          Length = 4671

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 121  gcgagctcctggccgatgc 139
            |||||||||||||||||||
Sbjct: 2744 gcgagctcctggccgatgc 2762
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>ref|XM_476685.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1125

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 106  ggcgaggggaagtgggcga 124
            |||||||||||||||||||
Sbjct: 1060 ggcgaggggaagtgggcga 1078
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 74      accacagccagaactgcca 92
               |||||||||||||||||||
Sbjct: 2068038 accacagccagaactgcca 2068020



 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 123    gagctcctggccgatgctg 141
              |||||||||||||||||||
Sbjct: 723827 gagctcctggccgatgctg 723809
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>gb|AY327232.1| Uncultured bacterium clone ZB41 16S ribosomal RNA gene, partial
           sequence
          Length = 809

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 120 ggcgagctcctggccgatg 138
           |||||||||||||||||||
Sbjct: 734 ggcgagctcctggccgatg 752
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>emb|AL358593.22| Human DNA sequence from clone RP11-473A10 on chromosome 1 Contains the
             3' end of the gene for a novel protein (KIAA1626,
             FLJ34701, FLJ44929, FLJ10521) and the 5' end of a novel
             gene, complete sequence
          Length = 142454

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 68    tcaccaaccacagccagaactgc 90
             ||||||||| |||||||||||||
Sbjct: 67975 tcaccaacctcagccagaactgc 67997
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>gb|AC011726.11| Homo sapiens chromosome , clone RP11-14I17, complete sequence
          Length = 170074

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 69     caccaaccacagccagaactgccactg 95
              |||||| ||||||||||| ||||||||
Sbjct: 141339 caccaagcacagccagaaatgccactg 141365
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>emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2
          Length = 223670

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 23   cgatctggccgaaggtgagcgcg 45
            |||| ||||||||||||||||||
Sbjct: 1839 cgatgtggccgaaggtgagcgcg 1817
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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 152     gccccgtcaagctgttgct 170
               |||||||||||||||||||
Sbjct: 2338902 gccccgtcaagctgttgct 2338920
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>emb|AJ719658.1| Gallus gallus mRNA for hypothetical protein, clone 4p19
          Length = 1711

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 77  acagccagaactgccactg 95
           |||||||||||||||||||
Sbjct: 460 acagccagaactgccactg 442
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>gb|DQ099068.1| Arachis stenosperma clone AS2ML1G04 microsatellite sequence
          Length = 322

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                              
Query: 55  cccaggtgccacgtcaccaaccacagccagaactg 89
           |||||||||||||| |||| ||||| ||| |||||
Sbjct: 142 cccaggtgccacgtaaccagccacaaccaaaactg 108
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>gb|DQ093944.1| Uncultured bacterium clone ga81 16S ribosomal RNA gene, partial
           sequence
          Length = 915

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 120 ggcgagctcctggccgatg 138
           |||||||||||||||||||
Sbjct: 722 ggcgagctcctggccgatg 740
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 22      ccgatctggccgaaggtgagcgc 44
               |||||||||||| ||||||||||
Sbjct: 2227983 ccgatctggccggaggtgagcgc 2228005
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>dbj|AK128403.1| Homo sapiens cDNA FLJ46546 fis, clone THYMU3038214
          Length = 4161

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 50  acagacccaggtgccacgt 68
           |||||||||||||||||||
Sbjct: 933 acagacccaggtgccacgt 951
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>dbj|AK095696.1| Homo sapiens cDNA FLJ38377 fis, clone FEBRA2002781
          Length = 3168

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 121 gcgagctcctggccgatgc 139
           |||||||||||||||||||
Sbjct: 813 gcgagctcctggccgatgc 831
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>gb|AE011817.1| Xanthomonas axonopodis pv. citri str. 306,  section 195 of 469 of the
            complete genome
          Length = 10715

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 22   ccgatctggccgaaggtgagcgc 44
            |||||||||||| ||||||||||
Sbjct: 9800 ccgatctggccggaggtgagcgc 9822
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>gb|AE012285.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 193
            of 460 of the complete genome
          Length = 12749

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 22   ccgatctggccgaaggtgagcgc 44
            |||||||||||| ||||||||||
Sbjct: 1037 ccgatctggccggaggtgagcgc 1059
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>emb|CR524257.1| Gallus gallus finished cDNA, clone ChEST1006b2
          Length = 1152

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 76  cacagccagaactgccact 94
           |||||||||||||||||||
Sbjct: 477 cacagccagaactgccact 459
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 22      ccgatctggccgaaggtgagcgc 44
               |||||||||||| ||||||||||
Sbjct: 2855414 ccgatctggccggaggtgagcgc 2855392
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>gb|AF334400.1|AF334400 Homo sapiens Vps39/Vam6-like protein gene, complete cds
          Length = 47833

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 50    acagacccaggtgccacgt 68
             |||||||||||||||||||
Sbjct: 43318 acagacccaggtgccacgt 43336
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 22       ccgatctggccgaaggtga 40
                |||||||||||||||||||
Sbjct: 19225289 ccgatctggccgaaggtga 19225307
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 106     ggcgaggggaagtgggcga 124
               |||||||||||||||||||
Sbjct: 3160124 ggcgaggggaagtgggcga 3160106
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>gb|AC010984.7| Homo sapiens BAC clone RP11-510C1 from 2, complete sequence
          Length = 191540

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 121   gcgagctcctggccgatgc 139
             |||||||||||||||||||
Sbjct: 72211 gcgagctcctggccgatgc 72229
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>ref|NM_152698.1| Homo sapiens hypothetical protein FLJ38377 (FLJ38377), mRNA
          Length = 3168

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 121 gcgagctcctggccgatgc 139
           |||||||||||||||||||
Sbjct: 813 gcgagctcctggccgatgc 831
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>gb|AC022468.5|AC022468 Homo sapiens chromosome 15 clone RP11-546B15 map 15q15, complete
             sequence
          Length = 183539

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 50    acagacccaggtgccacgt 68
             |||||||||||||||||||
Sbjct: 13280 acagacccaggtgccacgt 13262
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>gb|AC036103.8|AC036103 Homo sapiens chromosome 15 clone CTD-2610G5 map 15q15, complete
             sequence
          Length = 142121

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 50    acagacccaggtgccacgt 68
             |||||||||||||||||||
Sbjct: 88443 acagacccaggtgccacgt 88425
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>gb|AC140481.3| Homo sapiens BAC clone RP11-1216L17 from 2, complete sequence
          Length = 219471

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 121   gcgagctcctggccgatgc 139
             |||||||||||||||||||
Sbjct: 27918 gcgagctcctggccgatgc 27900
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>gb|AC092602.2| Homo sapiens BAC clone RP11-134G21 from 2, complete sequence
          Length = 166299

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 121   gcgagctcctggccgatgc 139
             |||||||||||||||||||
Sbjct: 36980 gcgagctcctggccgatgc 36962
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 23      cgatctggccgaaggtgagcgcg 45
               ||||| |||||||||||||||||
Sbjct: 5976769 cgatcaggccgaaggtgagcgcg 5976791
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>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0455F03
          Length = 158201

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 106   ggcgaggggaagtgggcga 124
             |||||||||||||||||||
Sbjct: 75114 ggcgaggggaagtgggcga 75096
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>dbj|AK109368.3| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-D03, full
           insert sequence
          Length = 1826

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 22  ccgatctggccgaaggtga 40
           |||||||||||||||||||
Sbjct: 414 ccgatctggccgaaggtga 396
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>dbj|AK073310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030F01, full
            insert sequence
          Length = 2721

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 22   ccgatctggccgaaggtga 40
            |||||||||||||||||||
Sbjct: 1309 ccgatctggccgaaggtga 1291
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>dbj|AK069916.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038C16, full
           insert sequence
          Length = 2118

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 22  ccgatctggccgaaggtga 40
           |||||||||||||||||||
Sbjct: 426 ccgatctggccgaaggtga 408
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>dbj|AK064238.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A09, full
           insert sequence
          Length = 1443

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 22  ccgatctggccgaaggtga 40
           |||||||||||||||||||
Sbjct: 318 ccgatctggccgaaggtga 300
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>dbj|AK061376.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-G07, full
           insert sequence
          Length = 1828

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 22  ccgatctggccgaaggtga 40
           |||||||||||||||||||
Sbjct: 414 ccgatctggccgaaggtga 396
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>dbj|AK061171.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-B06, full
           insert sequence
          Length = 1551

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 22  ccgatctggccgaaggtga 40
           |||||||||||||||||||
Sbjct: 395 ccgatctggccgaaggtga 377
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 22      ccgatctggccgaaggtgagcgc 44
               |||||||||||| ||||||||||
Sbjct: 2249021 ccgatctggccggaggtgagcgc 2249043
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 74     accacagccagaactgcca 92
              |||||||||||||||||||
Sbjct: 819705 accacagccagaactgcca 819687
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 22       ccgatctggccgaaggtga 40
                |||||||||||||||||||
Sbjct: 19151516 ccgatctggccgaaggtga 19151534
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>emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536_D01 of library Monsanto
           from chromosome 12 of cultivar Nipponbare of ssp.
           japonica of Oryza sativa (rice), complete sequence
          Length = 127026

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 22  ccgatctggccgaaggtga 40
           |||||||||||||||||||
Sbjct: 656 ccgatctggccgaaggtga 638
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>emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510_A06 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 136155

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    ccgatctggccgaaggtga 40
             |||||||||||||||||||
Sbjct: 58619 ccgatctggccgaaggtga 58637
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>emb|AL845502.5| Mouse DNA sequence from clone RP23-395A21 on chromosome 4, complete
             sequence
          Length = 163191

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 28/31 (90%)
 Strand = Plus / Minus

                                            
Query: 99    agccgggggcgaggggaagtgggcgagctcc 129
             |||| ||||| |||||||||||| |||||||
Sbjct: 89003 agcctggggccaggggaagtgggtgagctcc 88973


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 835,812
Number of Sequences: 3902068
Number of extensions: 835812
Number of successful extensions: 59289
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58784
Number of HSP's gapped (non-prelim): 505
length of query: 176
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 154
effective length of database: 17,147,199,772
effective search space: 2640668764888
effective search space used: 2640668764888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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