ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21d14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CAN10_RAT (Q9ES66) Calpain-10 (EC 3.4.22.-) (Calcium-activated n... 32 1.4
2CAN10_MOUSE (Q9ESK3) Calpain-10 (EC 3.4.22.-) (Calcium-activated... 32 1.4
3FILA_MOUSE (P11088) Filaggrin (Fragment) 29 8.9

>CAN10_RAT (Q9ES66) Calpain-10 (EC 3.4.22.-) (Calcium-activated neutral|
           proteinase 10) (CANP 10)
          Length = 666

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
 Frame = -3

Query: 395 FPRRPWEG-----LLCICWNRMESFPRRRGATRIDVV--PGKMAWQDHVGEAMFSCCAIR 237
           FP  PWEG     LL  CW        ++    +D V  PG+  W D   +  F+C   +
Sbjct: 56  FPDNPWEGQVKQGLLGDCWFLCACAALQKSRHLLDQVFPPGQPGWSDQEYQGFFTCRIWQ 115

Query: 236 IKHF 225
             H+
Sbjct: 116 FGHW 119



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>CAN10_MOUSE (Q9ESK3) Calpain-10 (EC 3.4.22.-) (Calcium-activated neutral|
           proteinase 10) (CANP 10)
          Length = 666

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
 Frame = -3

Query: 395 FPRRPWEG-----LLCICWNRMESFPRRRGATRIDVV--PGKMAWQDHVGEAMFSCCAIR 237
           FP  PWEG     LL  CW        ++    +D V  PG+  W D   +  F+C   +
Sbjct: 56  FPDNPWEGQVKQGLLGDCWFLCACAALQKSQHLLDQVFPPGQPGWSDQKYQGFFTCRIWQ 115

Query: 236 IKHF 225
             H+
Sbjct: 116 FGHW 119



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>FILA_MOUSE (P11088) Filaggrin (Fragment)|
          Length = 336

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2

Query: 486 EQPEPGHGDQQLCRRGHDGS 427
           EQPE GH  QQ   RGH G+
Sbjct: 189 EQPESGHRQQQSSGRGHQGA 208


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,198,342
Number of Sequences: 219361
Number of extensions: 1764326
Number of successful extensions: 3992
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3992
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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