ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21d12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470331.1| Oryza sativa (japonica cultivar-group), mRNA 151 3e-33
2ref|XM_470330.1| Oryza sativa (japonica cultivar-group), mRNA 151 3e-33
3dbj|AK105896.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 3e-33
4dbj|AK098986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 3e-33
5dbj|AK061773.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 3e-33
6gb|AY111836.1| Zea mays CL44778_1 mRNA sequence 88 3e-14
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 78 3e-11
8gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genom... 78 3e-11
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
10gb|BT018571.1| Zea mays clone EL01N0442H06.d mRNA sequence 62 2e-06
11gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 46 0.12
12gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 46 0.12
13gb|CP000009.1| Gluconobacter oxydans 621H, complete genome 46 0.12
14gb|AY232145.1| Drosophila yakuba clone yak-ad_wal mRNA sequence 44 0.46
15emb|CR555306.1| Azoarcus sp. EbN1 complete genome 44 0.46
16ref|XM_868942.1| PREDICTED: Bos taurus similar to Electron trans... 42 1.8
17gb|AC146008.3| Pan troglodytes BAC clone RP43-13N15 from 7, comp... 42 1.8
18gb|AC004852.2| Homo sapiens PAC clone RP4-668E10 from 7, complet... 42 1.8
19emb|AL929183.14| Zebrafish DNA sequence from clone CH211-142M8 i... 42 1.8
20gb|BC105382.1| Bos taurus cDNA clone MGC:128190 IMAGE:7962618, c... 42 1.8
21gb|AC146009.3| Pan troglodytes BAC clone RP43-13O12 from chromos... 42 1.8
22gb|AC125178.3| Mus musculus chromosome UNKNOWN clone RP23-319L16... 40 7.2
23gb|AC119252.10| Mus musculus chromosome 8, clone RP24-279M13, co... 40 7.2
24gb|AC114512.5| Rattus norvegicus 5 BAC CH230-5N9 (Children's Hos... 40 7.2
25gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 7.2
26gb|AC125396.4| Mus musculus BAC clone RP24-69M4 from chromosome ... 40 7.2
27emb|BX323578.20| Zebrafish DNA sequence from clone DKEYP-81D2 in... 40 7.2
28emb|BX323597.9| Zebrafish DNA sequence from clone CH211-227N13 i... 40 7.2
29dbj|AB225481.1| Aspergillus oryzae cDNA, contig sequence: AoEST2334 40 7.2
30dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001 40 7.2
31gb|AC182231.2| Mus musculus BAC clone RP23-356C18 from chromosom... 40 7.2
32gb|AC015450.5|AC015450 Arabidopsis thaliana chromosome 1 BAC F14... 40 7.2
33gb|AC154312.2| Mus musculus BAC clone RP23-354D20 from chromosom... 40 7.2
34gb|AC130832.3| Mus musculus BAC clone RP24-85B14 from chromosome... 40 7.2
35gb|AF131778.1|AF131778 Homo sapiens clone 24861 DAP-1 alpha mRNA... 40 7.2
36gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 7.2 
>ref|XM_470331.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1375

 Score =  151 bits (76), Expect = 3e-33
 Identities = 169/200 (84%)
 Strand = Plus / Minus

                                                                        
Query: 331  acctgaaagattggggcgtctgcgtctttgttgaccgccacaatgtacttggaatctctc 390
            |||||||| || || || ||||| ||||||||||| ||||| ||   |||||||||||||
Sbjct: 1107 acctgaaatatgggagcatctgcatctttgttgacagccacgataaccttggaatctctc 1048

                                                                        
Query: 391  atccccgccaagtgttgtatcgcccctgaaactccgaaagcaatgtagagctcaagcgca 450
            || || |||||||||||||| || || || ||||| || || || ||||||||| |||||
Sbjct: 1047 attcctgccaagtgttgtattgctccggatactccaaatgccatatagagctcaggcgca 988

                                                                        
Query: 451  acaatcttcccggtttgcccaacttgaagttcattcggcacatatcctgcatcgacggca 510
            || || ||||| || || ||||| ||||||||||| || ||| |||||||||| ||||||
Sbjct: 987  actattttcccagtctgaccaacctgaagttcattgggaacaaatcctgcatctacggca 928

                                
Query: 511  gctctggtcgcacccactgc 530
            ||||||||||||||||||||
Sbjct: 927  gctctggtcgcacccactgc 908
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>ref|XM_470330.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1437

 Score =  151 bits (76), Expect = 3e-33
 Identities = 169/200 (84%)
 Strand = Plus / Minus

                                                                        
Query: 331  acctgaaagattggggcgtctgcgtctttgttgaccgccacaatgtacttggaatctctc 390
            |||||||| || || || ||||| ||||||||||| ||||| ||   |||||||||||||
Sbjct: 1147 acctgaaatatgggagcatctgcatctttgttgacagccacgataaccttggaatctctc 1088

                                                                        
Query: 391  atccccgccaagtgttgtatcgcccctgaaactccgaaagcaatgtagagctcaagcgca 450
            || || |||||||||||||| || || || ||||| || || || ||||||||| |||||
Sbjct: 1087 attcctgccaagtgttgtattgctccggatactccaaatgccatatagagctcaggcgca 1028

                                                                        
Query: 451  acaatcttcccggtttgcccaacttgaagttcattcggcacatatcctgcatcgacggca 510
            || || ||||| || || ||||| ||||||||||| || ||| |||||||||| ||||||
Sbjct: 1027 actattttcccagtctgaccaacctgaagttcattgggaacaaatcctgcatctacggca 968

                                
Query: 511  gctctggtcgcacccactgc 530
            ||||||||||||||||||||
Sbjct: 967  gctctggtcgcacccactgc 948
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>dbj|AK105896.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F02, full
            insert sequence
          Length = 1368

 Score =  151 bits (76), Expect = 3e-33
 Identities = 169/200 (84%)
 Strand = Plus / Minus

                                                                        
Query: 331  acctgaaagattggggcgtctgcgtctttgttgaccgccacaatgtacttggaatctctc 390
            |||||||| || || || ||||| ||||||||||| ||||| ||   |||||||||||||
Sbjct: 1171 acctgaaatatgggagcatctgcatctttgttgacagccacgataaccttggaatctctc 1112

                                                                        
Query: 391  atccccgccaagtgttgtatcgcccctgaaactccgaaagcaatgtagagctcaagcgca 450
            || || |||||||||||||| || || || ||||| || || || ||||||||| |||||
Sbjct: 1111 attcctgccaagtgttgtattgctccggatactccaaatgccatatagagctcaggcgca 1052

                                                                        
Query: 451  acaatcttcccggtttgcccaacttgaagttcattcggcacatatcctgcatcgacggca 510
            || || ||||| || || ||||| ||||||||||| || ||| |||||||||| ||||||
Sbjct: 1051 actattttcccagtctgaccaacctgaagttcattgggaacaaatcctgcatctacggca 992

                                
Query: 511  gctctggtcgcacccactgc 530
            ||||||||||||||||||||
Sbjct: 991  gctctggtcgcacccactgc 972
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>dbj|AK098986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093P06, full
            insert sequence
          Length = 1320

 Score =  151 bits (76), Expect = 3e-33
 Identities = 169/200 (84%)
 Strand = Plus / Minus

                                                                        
Query: 331  acctgaaagattggggcgtctgcgtctttgttgaccgccacaatgtacttggaatctctc 390
            |||||||| || || || ||||| ||||||||||| ||||| ||   |||||||||||||
Sbjct: 1159 acctgaaatatgggagcatctgcatctttgttgacagccacgataaccttggaatctctc 1100

                                                                        
Query: 391  atccccgccaagtgttgtatcgcccctgaaactccgaaagcaatgtagagctcaagcgca 450
            || || |||||||||||||| || || || ||||| || || || ||||||||| |||||
Sbjct: 1099 attcctgccaagtgttgtattgctccggatactccaaatgccatatagagctcaggcgca 1040

                                                                        
Query: 451  acaatcttcccggtttgcccaacttgaagttcattcggcacatatcctgcatcgacggca 510
            || || ||||| || || ||||| ||||||||||| || ||| |||||||||| ||||||
Sbjct: 1039 actattttcccagtctgaccaacctgaagttcattgggaacaaatcctgcatctacggca 980

                                
Query: 511  gctctggtcgcacccactgc 530
            ||||||||||||||||||||
Sbjct: 979  gctctggtcgcacccactgc 960
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>dbj|AK061773.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-D01, full
            insert sequence
          Length = 1368

 Score =  151 bits (76), Expect = 3e-33
 Identities = 169/200 (84%)
 Strand = Plus / Minus

                                                                        
Query: 331  acctgaaagattggggcgtctgcgtctttgttgaccgccacaatgtacttggaatctctc 390
            |||||||| || || || ||||| ||||||||||| ||||| ||   |||||||||||||
Sbjct: 1171 acctgaaatatgggagcatctgcatctttgttgacagccacgataaccttggaatctctc 1112

                                                                        
Query: 391  atccccgccaagtgttgtatcgcccctgaaactccgaaagcaatgtagagctcaagcgca 450
            || || |||||||||||||| || || || ||||| || || || ||||||||| |||||
Sbjct: 1111 attcctgccaagtgttgtattgctccggatactccaaatgccatatagagctcaggcgca 1052

                                                                        
Query: 451  acaatcttcccggtttgcccaacttgaagttcattcggcacatatcctgcatcgacggca 510
            || || ||||| || || ||||| ||||||||||| || ||| |||||||||| ||||||
Sbjct: 1051 actattttcccagtctgaccaacctgaagttcattgggaacaaatcctgcatctacggca 992

                                
Query: 511  gctctggtcgcacccactgc 530
            ||||||||||||||||||||
Sbjct: 991  gctctggtcgcacccactgc 972
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>gb|AY111836.1| Zea mays CL44778_1 mRNA sequence
          Length = 591

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 219/279 (78%)
 Strand = Plus / Plus

                                                                       
Query: 252 cacttatttcttgtctgggatcttctccaggagctcctcgaggacttggaacagatcgcc 311
           |||||||||||| ||||||||||||| ||  | ||| || || || | |||||||||  |
Sbjct: 222 cacttatttcttctctgggatcttcttcaataactcatccagaacctcgaacagatcagc 281

                                                                       
Query: 312 aacgatcccgtaatctgcgacctgaaagattggggcgtctgcgtctttgttgaccgccac 371
           ||| |  ||||||||||| |||||||| ||     | || || ||||| || || |||||
Sbjct: 282 aaccagtccgtaatctgcaacctgaaatatnnnnncatcagcatctttattaacagccac 341

                                                                       
Query: 372 aatgtacttggaatctctcatccccgccaagtgttgtatcgcccctgaaactccgaaagc 431
           ||||  ||| || |||||||| || |||||||||||||| || || || ||||| |||||
Sbjct: 342 aatgaccttcgagtctctcattcctgccaagtgttgtattgctccggatactccaaaagc 401

                                                                       
Query: 432 aatgtagagctcaagcgcaacaatcttcccggtttgcccaacttgaagttcattcggcac 491
            || || || ||  ||||||| || ||||| || || ||||| ||||| ||||| || ||
Sbjct: 402 catataaagatccggcgcaacgattttccccgtctgaccaacctgaaggtcatttggaac 461

                                                  
Query: 492 atatcctgcatcgacggcagctctggtcgcacccactgc 530
           ||| |||||||| || ||||| |  ||||||||||||||
Sbjct: 462 ataacctgcatcaacagcagcccgagtcgcacccactgc 500
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 108/131 (82%)
 Strand = Plus / Minus

                                                                            
Query: 331      acctgaaagattggggcgtctgcgtctttgttgaccgccacaatgtacttggaatctctc 390
                |||||||| || || || ||||| ||||||||||| ||||| ||   |||||||||||||
Sbjct: 34799335 acctgaaatatgggagcatctgcatctttgttgacagccacgataaccttggaatctctc 34799276

                                                                            
Query: 391      atccccgccaagtgttgtatcgcccctgaaactccgaaagcaatgtagagctcaagcgca 450
                || || |||||||||||||| || || || ||||| || || || ||||||||| |||||
Sbjct: 34799275 attcctgccaagtgttgtattgctccggatactccaaatgccatatagagctcaggcgca 34799216

                           
Query: 451      acaatcttccc 461
                || || |||||
Sbjct: 34799215 actattttccc 34799205



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                      
Query: 475      tgaagttcattcggcacatatcctgcatcgacggcagctctggtcgcacccact 528
                ||||||||||| || ||| |||||||||| ||||||||||||||||||||||||
Sbjct: 34798900 tgaagttcattgggaacaaatcctgcatctacggcagctctggtcgcacccact 34798847
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>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete
             sequence
          Length = 164352

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 108/131 (82%)
 Strand = Plus / Plus

                                                                         
Query: 331   acctgaaagattggggcgtctgcgtctttgttgaccgccacaatgtacttggaatctctc 390
             |||||||| || || || ||||| ||||||||||| ||||| ||   |||||||||||||
Sbjct: 63315 acctgaaatatgggagcatctgcatctttgttgacagccacgataaccttggaatctctc 63374

                                                                         
Query: 391   atccccgccaagtgttgtatcgcccctgaaactccgaaagcaatgtagagctcaagcgca 450
             || || |||||||||||||| || || || ||||| || || || ||||||||| |||||
Sbjct: 63375 attcctgccaagtgttgtattgctccggatactccaaatgccatatagagctcaggcgca 63434

                        
Query: 451   acaatcttccc 461
             || || |||||
Sbjct: 63435 actattttccc 63445



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                   
Query: 475   tgaagttcattcggcacatatcctgcatcgacggcagctctggtcgcacccact 528
             ||||||||||| || ||| |||||||||| ||||||||||||||||||||||||
Sbjct: 63750 tgaagttcattgggaacaaatcctgcatctacggcagctctggtcgcacccact 63803
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 108/131 (82%)
 Strand = Plus / Minus

                                                                            
Query: 331      acctgaaagattggggcgtctgcgtctttgttgaccgccacaatgtacttggaatctctc 390
                |||||||| || || || ||||| ||||||||||| ||||| ||   |||||||||||||
Sbjct: 34889407 acctgaaatatgggagcatctgcatctttgttgacagccacgataaccttggaatctctc 34889348

                                                                            
Query: 391      atccccgccaagtgttgtatcgcccctgaaactccgaaagcaatgtagagctcaagcgca 450
                || || |||||||||||||| || || || ||||| || || || ||||||||| |||||
Sbjct: 34889347 attcctgccaagtgttgtattgctccggatactccaaatgccatatagagctcaggcgca 34889288

                           
Query: 451      acaatcttccc 461
                || || |||||
Sbjct: 34889287 actattttccc 34889277



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                      
Query: 475      tgaagttcattcggcacatatcctgcatcgacggcagctctggtcgcacccact 528
                ||||||||||| || ||| |||||||||| ||||||||||||||||||||||||
Sbjct: 34888972 tgaagttcattgggaacaaatcctgcatctacggcagctctggtcgcacccact 34888919
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>gb|BT018571.1| Zea mays clone EL01N0442H06.d mRNA sequence
          Length = 1324

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 121/151 (80%)
 Strand = Plus / Plus

                                                                       
Query: 252 cacttatttcttgtctgggatcttctccaggagctcctcgaggacttggaacagatcgcc 311
           |||||||||||| ||||||||||||| ||  | ||| || || || | |||||||||  |
Sbjct: 276 cacttatttcttctctgggatcttcttcaataactcatccagaacctcgaacagatcagc 335

                                                                       
Query: 312 aacgatcccgtaatctgcgacctgaaagattggggcgtctgcgtctttgttgaccgccac 371
           ||| |  ||||||||||| |||||||| || ||||| || || ||||| || || |||||
Sbjct: 336 aaccagtccgtaatctgcaacctgaaatatgggggcatcagcatctttattaacagccac 395

                                          
Query: 372 aatgtacttggaatctctcatccccgccaag 402
           ||||  ||| || |||||||| || ||||||
Sbjct: 396 aatgaccttcgagtctctcattcctgccaag 426
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                         
Query: 358    ttgttgaccgccacaatgtacttggaatctctcatccccgcca 400
              ||||||| ||||||||||  ||| |||||| ||||||||||||
Sbjct: 343228 ttgttgatcgccacaatgaccttcgaatctttcatccccgcca 343186
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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                             
Query: 318    cccgtaatctgcgacctgaaagattggggcgtctgcgtctttgttga 364
              |||||| ||||| ||||||||||| || || ||| ||||||||||||
Sbjct: 540021 cccgtagtctgcaacctgaaagataggtgcttcttcgtctttgttga 539975
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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                         
Query: 292    aggacttggaacagatcgccaacgatcccgtaatctgcgacct 334
              |||||||  ||||||||||| ||||| |||||||| |||||||
Sbjct: 939461 aggacttcaaacagatcgcccacgataccgtaatcggcgacct 939419
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>gb|AY232145.1| Drosophila yakuba clone yak-ad_wal mRNA sequence
          Length = 711

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                       
Query: 451 acaatcttcccggtttgcccaacttgaagttcattcggcacatatcctgcatcgacggca 510
           |||||||| ||||| || || | ||| || ||||| |||||| |||| ||||||||||||
Sbjct: 620 acaatctttccggtctgaccgatttgcagatcattaggcacaaatccagcatcgacggca 561

             
Query: 511 gc 512
           ||
Sbjct: 560 gc 559
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                         
Query: 300     gaacagatcgccaacgatcccgtaatctgcgacctgaaagat 341
               |||||||||||| |||| |||||| || |||||||| |||||
Sbjct: 3857572 gaacagatcgccgacgagcccgtagtcggcgacctggaagat 3857613
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>ref|XM_868942.1| PREDICTED: Bos taurus similar to Electron transfer flavoprotein
           alpha-subunit, mitochondrial precursor (Alpha-ETF)
           (LOC616827), partial mRNA
          Length = 522

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 322 taatctgcgacctgaaagattggggcgtctgcgtctttgttgaccgccacaat 374
           |||||||| || ||||| ||||| || |||| |||||||||||  ||||||||
Sbjct: 205 taatctgccacttgaaaaattggagcttctgggtctttgttgatagccacaat 153
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>gb|AC146008.3| Pan troglodytes BAC clone RP43-13N15 from 7, complete sequence
          Length = 151195

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 60     tgtatatgtacaaagtggggagatg 84
              |||| ||||||||||||||||||||
Sbjct: 107482 tgtacatgtacaaagtggggagatg 107458
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>gb|AC004852.2| Homo sapiens PAC clone RP4-668E10 from 7, complete sequence
          Length = 158541

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 60     tgtatatgtacaaagtggggagatg 84
              |||| ||||||||||||||||||||
Sbjct: 143843 tgtacatgtacaaagtggggagatg 143867
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>emb|AL929183.14| Zebrafish DNA sequence from clone CH211-142M8 in linkage group 25,
             complete sequence
          Length = 180603

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 169   caaccatacaacaatgacata 189
             |||||||||||||||||||||
Sbjct: 53852 caaccatacaacaatgacata 53872
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>gb|BC105382.1| Bos taurus cDNA clone MGC:128190 IMAGE:7962618, complete cds
          Length = 1525

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 322  taatctgcgacctgaaagattggggcgtctgcgtctttgttgaccgccacaat 374
            |||||||| || ||||| ||||| || |||| |||||||||||  ||||||||
Sbjct: 1063 taatctgccacttgaaaaattggagcttctgggtctttgttgatagccacaat 1011
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>gb|AC146009.3| Pan troglodytes BAC clone RP43-13O12 from chromosome 7, complete
             sequence
          Length = 169801

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 60    tgtatatgtacaaagtggggagatg 84
             |||| ||||||||||||||||||||
Sbjct: 97314 tgtacatgtacaaagtggggagatg 97290
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>gb|AC125178.3| Mus musculus chromosome UNKNOWN clone RP23-319L16, complete sequence
          Length = 184189

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     tgcatgtatatgtacaaagt 75
              ||||||||||||||||||||
Sbjct: 164370 tgcatgtatatgtacaaagt 164351
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>gb|AC119252.10| Mus musculus chromosome 8, clone RP24-279M13, complete sequence
          Length = 176594

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 55   gtgcatgtatatgtacaaag 74
            ||||||||||||||||||||
Sbjct: 5914 gtgcatgtatatgtacaaag 5933
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>gb|AC114512.5| Rattus norvegicus 5 BAC CH230-5N9 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 247588

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     gaaaatgtcaactgtcaaca 111
              ||||||||||||||||||||
Sbjct: 180255 gaaaatgtcaactgtcaaca 180274
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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 487     ggcacatatcctgcatcgac 506
               ||||||||||||||||||||
Sbjct: 1265010 ggcacatatcctgcatcgac 1265029
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>gb|AC125396.4| Mus musculus BAC clone RP24-69M4 from chromosome 16, complete sequence
          Length = 179186

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 225    catgatagatgattgacacg 244
              ||||||||||||||||||||
Sbjct: 172378 catgatagatgattgacacg 172397
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>emb|BX323578.20| Zebrafish DNA sequence from clone DKEYP-81D2 in linkage group 14,
             complete sequence
          Length = 214676

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   accagccaaccatacaacaa 182
             ||||||||||||||||||||
Sbjct: 58207 accagccaaccatacaacaa 58226
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>emb|BX323597.9| Zebrafish DNA sequence from clone CH211-227N13 in linkage group 11,
             complete sequence
          Length = 177773

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    tttttgaaaatgtcaactgt 106
             ||||||||||||||||||||
Sbjct: 92341 tttttgaaaatgtcaactgt 92322
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>dbj|AB225481.1| Aspergillus oryzae cDNA, contig sequence: AoEST2334
          Length = 1113

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 63  atatgtacaaagtggggagatgag 86
           |||||||||||||||| |||||||
Sbjct: 912 atatgtacaaagtgggaagatgag 889
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>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001
          Length = 2005935

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 63      atatgtacaaagtggggagatgag 86
               |||||||||||||||| |||||||
Sbjct: 1171536 atatgtacaaagtgggaagatgag 1171559
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>gb|AC182231.2| Mus musculus BAC clone RP23-356C18 from chromosome 8, complete sequence
          Length = 206310

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    gtgcatgtatatgtacaaag 74
             ||||||||||||||||||||
Sbjct: 68221 gtgcatgtatatgtacaaag 68202
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>gb|AC015450.5|AC015450 Arabidopsis thaliana chromosome 1 BAC F14G6 genomic sequence, complete
             sequence
          Length = 100806

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    aaaatgtcaactgtcaacac 112
             ||||||||||||||||||||
Sbjct: 85567 aaaatgtcaactgtcaacac 85586
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>gb|AC154312.2| Mus musculus BAC clone RP23-354D20 from chromosome 16, complete
             sequence
          Length = 197884

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   catgatagatgattgacacg 244
             ||||||||||||||||||||
Sbjct: 53797 catgatagatgattgacacg 53816
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>gb|AC130832.3| Mus musculus BAC clone RP24-85B14 from chromosome unknown, complete
              sequence
          Length = 246022

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     tgcatgtatatgtacaaagt 75
              ||||||||||||||||||||
Sbjct: 117070 tgcatgtatatgtacaaagt 117051
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>gb|AF131778.1|AF131778 Homo sapiens clone 24861 DAP-1 alpha mRNA sequence, partial cds
          Length = 1645

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 gggatcttctccaggagctcctcg 291
           |||||||||||||||| |||||||
Sbjct: 540 gggatcttctccaggatctcctcg 517
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 495     tcctgcatcgacggcagctc 514
               ||||||||||||||||||||
Sbjct: 2751813 tcctgcatcgacggcagctc 2751832


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,541,416
Number of Sequences: 3902068
Number of extensions: 4541416
Number of successful extensions: 84362
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84159
Number of HSP's gapped (non-prelim): 201
length of query: 530
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 507
effective length of database: 17,143,297,704
effective search space: 8691651935928
effective search space used: 8691651935928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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