ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21d11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 488 e-134
2dbj|AK071884.1| Oryza sativa (japonica cultivar-group) cDNA clon... 280 6e-72
3gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare str... 113 9e-22
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 113 9e-22
5dbj|AP004240.3| Oryza sativa (japonica cultivar-group) genomic D... 113 9e-22
6ref|XM_550363.1| Oryza sativa (japonica cultivar-group), mRNA 86 2e-13
7dbj|AK101686.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 2e-13
8gb|AY109399.1| Zea mays CL499_1 mRNA sequence 84 8e-13
9ref|NM_188205.1| Oryza sativa (japonica cultivar-group), mRNA 78 5e-11
10dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 78 5e-11
11dbj|AP005168.3| Oryza sativa (japonica cultivar-group) genomic D... 78 5e-11
12dbj|AP004264.4| Oryza sativa (japonica cultivar-group) genomic D... 78 5e-11
13dbj|AK120134.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 5e-11
14dbj|AP004336.2| Oryza sativa (japonica cultivar-group) genomic D... 78 5e-11
15ref|NM_102238.2| Arabidopsis thaliana GAMMA-ADAPTIN 1 (GAMMA-ADA... 56 2e-04
16ref|NM_179370.2| Arabidopsis thaliana GAMMA-ADAPTIN 1 (GAMMA-ADA... 56 2e-04
17emb|AJ133777.1|ATH133777 Arabidopsis thaliana mRNA for gamma-ada... 56 2e-04
18gb|BT005557.1| Arabidopsis thaliana clone U50014 putative gamma-... 56 2e-04
19gb|BT004307.1| Arabidopsis thaliana clone RAFL16-01-N23 (R50014)... 56 2e-04
20gb|AF124524.1|AF124524 Arabidopsis thaliana gamma-adaptin 1 gene... 56 2e-04
21gb|AF061286.1|AF061286 Arabidopsis thaliana gamma-adaptin 1 mRNA... 56 2e-04
22dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.003
23dbj|AB023482.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.003
24gb|AC002423.3|AC002423 Genomic sequence for Arabidopsis thaliana... 44 0.67
25emb|BX072532.7| Zebrafish DNA sequence from clone CH211-10B9 in ... 44 0.67
26dbj|AP006632.1| Lotus japonicus genomic DNA, chromosome 2, clone... 44 0.67
27gb|AC167537.7| Mus musculus chromosome 8, clone RP23-99B10, comp... 42 2.6
28gb|AC166782.4| Mus musculus chromosome 8, clone wi1-146O13, comp... 42 2.6
29ref|XM_658361.1| Aspergillus nidulans FGSC A4 hypothetical prote... 42 2.6
30gb|AC008282.4| Homo sapiens BAC clone RP11-516B14 from 2, comple... 42 2.6
31gb|AC068943.4| Homo sapiens BAC clone RP11-769M2 from 2, complet... 42 2.6
32emb|BX470164.10| Zebrafish DNA sequence from clone DKEY-24L11 in... 42 2.6
33emb|CT009564.11| Mouse DNA sequence from clone RP23-16F13 on chr... 42 2.6
34emb|CR385047.19| Zebrafish DNA sequence from clone DKEY-221N16 i... 42 2.6 
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score =  488 bits (246), Expect = e-134
 Identities = 276/286 (96%)
 Strand = Plus / Plus

                                                                          
Query: 1      tgaacgcaagttgacaaacaaattaacctagtggaagcatacttttgaccatcttaacaa 60
              ||||||||||||||||||||||||||||||| ||||||||| |||||| ||| |||||||
Sbjct: 135035 tgaacgcaagttgacaaacaaattaacctagaggaagcatagttttgagcatgttaacaa 135094

                                                                          
Query: 61     tcatctagaacacacaagttacaaaaagataaggactattggttactatgagagacttca 120
              ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 135095 tcatctagaacacacaagtcacaaaaagataaggactattggttactacgagagacttca 135154

                                                                          
Query: 121    gatggtccagaacacacaagtttgtatctacatgcacaaagtgcaagcttcgaaacactc 180
              ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 135155 gatggtccagaacacacaagtttgtatctacatgcacaaagtgcaagctccaaaacactc 135214

                                                                          
Query: 181    gaaacaccaaatggtctacaagacaacaaggtccatgattacaggttggttggtccataa 240
              |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 135215 gaaacaccaaatggtctacaagacaataaggtccatgattacaggttggttggtccataa 135274

                                                            
Query: 241    acgctagagagtcatcatgtccatgtgcatcaataggttgagtacc 286
              ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 135275 acgctggagagtcatcatgtccatgtgcatcaataggttgagtacc 135320



 Score =  488 bits (246), Expect = e-134
 Identities = 276/286 (96%)
 Strand = Plus / Plus

                                                                         
Query: 1     tgaacgcaagttgacaaacaaattaacctagtggaagcatacttttgaccatcttaacaa 60
             ||||||||||||||||||||||||||||||| ||||||||| |||||| ||| |||||||
Sbjct: 95322 tgaacgcaagttgacaaacaaattaacctagaggaagcatagttttgagcatgttaacaa 95381

                                                                         
Query: 61    tcatctagaacacacaagttacaaaaagataaggactattggttactatgagagacttca 120
             ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 95382 tcatctagaacacacaagtcacaaaaagataaggactattggttactacgagagacttca 95441

                                                                         
Query: 121   gatggtccagaacacacaagtttgtatctacatgcacaaagtgcaagcttcgaaacactc 180
             ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 95442 gatggtccagaacacacaagtttgtatctacatgcacaaagtgcaagctccaaaacactc 95501

                                                                         
Query: 181   gaaacaccaaatggtctacaagacaacaaggtccatgattacaggttggttggtccataa 240
             |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 95502 gaaacaccaaatggtctacaagacaataaggtccatgattacaggttggttggtccataa 95561

                                                           
Query: 241   acgctagagagtcatcatgtccatgtgcatcaataggttgagtacc 286
             ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95562 acgctggagagtcatcatgtccatgtgcatcaataggttgagtacc 95607



 Score =  172 bits (87), Expect = 1e-39
 Identities = 90/91 (98%)
 Strand = Plus / Plus

                                                                          
Query: 283    taccggcattcaccccattgatatcctgtgtgagaatgagatcaggcgatgcatcaaaat 342
              ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 136018 taccggcattcaccccattgatatcctctgtgagaatgagatcaggcgatgcatcaaaat 136077

                                             
Query: 343    cactatgcccaatcaccgagaacaaaatctc 373
              |||||||||||||||||||||||||||||||
Sbjct: 136078 cactatgcccaatcaccgagaacaaaatctc 136108



 Score =  172 bits (87), Expect = 1e-39
 Identities = 90/91 (98%)
 Strand = Plus / Plus

                                                                         
Query: 283   taccggcattcaccccattgatatcctgtgtgagaatgagatcaggcgatgcatcaaaat 342
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 96305 taccggcattcaccccattgatatcctctgtgagaatgagatcaggcgatgcatcaaaat 96364

                                            
Query: 343   cactatgcccaatcaccgagaacaaaatctc 373
             |||||||||||||||||||||||||||||||
Sbjct: 96365 cactatgcccaatcaccgagaacaaaatctc 96395



 Score =  129 bits (65), Expect = 1e-26
 Identities = 74/77 (96%)
 Strand = Plus / Plus

                                                                          
Query: 373    caacgaaatgtcagtgttagtaaccagagtataatttgtcttcttctcaaagtgtttctt 432
              |||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 136230 caacgaaatgtcacggttagtaaccagagtgtaatttgtcttcttctcaaagtgtttctt 136289

                               
Query: 433    tcagcatatgccaactc 449
              |||||||||||||||||
Sbjct: 136290 tcagcatatgccaactc 136306



 Score =  129 bits (65), Expect = 1e-26
 Identities = 74/77 (96%)
 Strand = Plus / Plus

                                                                         
Query: 373   caacgaaatgtcagtgttagtaaccagagtataatttgtcttcttctcaaagtgtttctt 432
             |||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 96517 caacgaaatgtcacggttagtaaccagagtgtaatttgtcttcttctcaaagtgtttctt 96576

                              
Query: 433   tcagcatatgccaactc 449
             |||||||||||||||||
Sbjct: 96577 tcagcatatgccaactc 96593
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>dbj|AK071884.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047F12, full
            insert sequence
          Length = 3763

 Score =  280 bits (141), Expect = 6e-72
 Identities = 268/309 (86%), Gaps = 1/309 (0%)
 Strand = Plus / Minus

                                                                        
Query: 452  ggataaaaccttgaacatctgatcaagataccataacttttcttgagaaaacttttcagc 511
            ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
Sbjct: 1499 ggataaaaccttgaacatctgatcaaggtaccataacttctcttgagaaaacttttcaac 1440

                                                                        
Query: 512  catagagcatatcttggctctgagatcttctttgaagtctggattagctactttcaagta 571
             || ||||||||||||||  |||||||||||||||| || |||| ||||   |  |||||
Sbjct: 1439 tattgagcatatcttggcagtgagatcttctttgaaatccggatcagctgaatctaagta 1380

                                                                        
Query: 572  gtcgacaagctttttggtcagtagctttacattagtatcattgaccaacaaataaacaag 631
            ||||||||||| ||| ||||   |||||||||| ||||| ||||| |||||| |||||||
Sbjct: 1379 gtcgacaagctctttagtcaaaggctttacatttgtatcgttgactaacaaaaaaacaag 1320

                                                                        
Query: 632  ttctagggcccttttgcgaatgggggcatcggcatcctttacacactccaatattgacac 691
            ||| |||||||| |||||||| |  ||||| ||||||||||||||||||||||||| |  
Sbjct: 1319 ttcaagggccctcttgcgaatagaagcatctgcatcctttacacactccaatattgtcgt 1260

                                                                        
Query: 692  cctgtgcctctgtactgcttgtgtatctactataat-gccgtcataagtatgttcagagc 750
            |||||| ||||||||||| |||||||||||  |||| ||| ||||||| |||||||||||
Sbjct: 1259 cctgtgtctctgtactgcctgtgtatctacagtaatggccctcataagcatgttcagagc 1200

                     
Query: 751  aacatatct 759
            ||| |||||
Sbjct: 1199 aacgtatct 1191
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>gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0049O12, from chromosome 2, complete sequence
          Length = 155154

 Score =  113 bits (57), Expect = 9e-22
 Identities = 141/169 (83%)
 Strand = Plus / Minus

                                                                          
Query: 501    aacttttcagccatagagcatatcttggctctgagatcttctttgaagtctggattagct 560
              ||||||||| | || ||||||||||||||  |||||||||||||||| || |||| ||||
Sbjct: 145855 aacttttcaactattgagcatatcttggcagtgagatcttctttgaaatccggatcagct 145796

                                                                          
Query: 561    actttcaagtagtcgacaagctttttggtcagtagctttacattagtatcattgaccaac 620
                 |  |||||||||||||||| ||| ||||   |||||||||| ||||| ||||| |||
Sbjct: 145795 gaatctaagtagtcgacaagctctttagtcaaaggctttacatttgtatcgttgactaac 145736

                                                               
Query: 621    aaataaacaagttctagggcccttttgcgaatgggggcatcggcatcct 669
              ||| |||||||||| |||||||| |||||||| |  ||||| |||||||
Sbjct: 145735 aaaaaaacaagttcaagggccctcttgcgaatagaagcatctgcatcct 145687



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 85/96 (88%), Gaps = 1/96 (1%)
 Strand = Plus / Minus

                                                                          
Query: 667    cctttacacactccaatattgacaccctgtgcctctgtactgcttgtgtatctactataa 726
              ||||||||||||||||||||| |  |||||| ||||||||||| |||||||||||  |||
Sbjct: 145226 cctttacacactccaatattgtcgtcctgtgtctctgtactgcctgtgtatctacagtaa 145167

                                                  
Query: 727    t-gccgtcataagtatgttcagagcaacatatctga 761
              | ||| ||||||| |||||||||||||| |||||||
Sbjct: 145166 tggccctcataagcatgttcagagcaacgtatctga 145131



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                                  
Query: 452    ggataaaaccttgaacatctgatcaagataccataacttttcttgagaaaac 503
              ||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 145983 ggataaaaccttgaacatctgatcaaggtaccataacttctcttgagaaaac 145932
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  113 bits (57), Expect = 9e-22
 Identities = 141/169 (83%)
 Strand = Plus / Plus

                                                                            
Query: 501      aacttttcagccatagagcatatcttggctctgagatcttctttgaagtctggattagct 560
                ||||||||| | || ||||||||||||||  |||||||||||||||| || |||| ||||
Sbjct: 34359251 aacttttcaactattgagcatatcttggcagtgagatcttctttgaaatccggatcagct 34359310

                                                                            
Query: 561      actttcaagtagtcgacaagctttttggtcagtagctttacattagtatcattgaccaac 620
                   |  |||||||||||||||| ||| ||||   |||||||||| ||||| ||||| |||
Sbjct: 34359311 gaatctaagtagtcgacaagctctttagtcaaaggctttacatttgtatcgttgactaac 34359370

                                                                 
Query: 621      aaataaacaagttctagggcccttttgcgaatgggggcatcggcatcct 669
                ||| |||||||||| |||||||| |||||||| |  ||||| |||||||
Sbjct: 34359371 aaaaaaacaagttcaagggccctcttgcgaatagaagcatctgcatcct 34359419



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 85/96 (88%), Gaps = 1/96 (1%)
 Strand = Plus / Plus

                                                                            
Query: 667      cctttacacactccaatattgacaccctgtgcctctgtactgcttgtgtatctactataa 726
                ||||||||||||||||||||| |  |||||| ||||||||||| |||||||||||  |||
Sbjct: 34359880 cctttacacactccaatattgtcgtcctgtgtctctgtactgcctgtgtatctacagtaa 34359939

                                                    
Query: 727      t-gccgtcataagtatgttcagagcaacatatctga 761
                | ||| ||||||| |||||||||||||| |||||||
Sbjct: 34359940 tggccctcataagcatgttcagagcaacgtatctga 34359975



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                                    
Query: 452      ggataaaaccttgaacatctgatcaagataccataacttttcttgagaaaac 503
                ||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 34359123 ggataaaaccttgaacatctgatcaaggtaccataacttctcttgagaaaac 34359174
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>dbj|AP004240.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1548_F12
          Length = 118814

 Score =  113 bits (57), Expect = 9e-22
 Identities = 141/169 (83%)
 Strand = Plus / Plus

                                                                         
Query: 501   aacttttcagccatagagcatatcttggctctgagatcttctttgaagtctggattagct 560
             ||||||||| | || ||||||||||||||  |||||||||||||||| || |||| ||||
Sbjct: 56898 aacttttcaactattgagcatatcttggcagtgagatcttctttgaaatccggatcagct 56957

                                                                         
Query: 561   actttcaagtagtcgacaagctttttggtcagtagctttacattagtatcattgaccaac 620
                |  |||||||||||||||| ||| ||||   |||||||||| ||||| ||||| |||
Sbjct: 56958 gaatctaagtagtcgacaagctctttagtcaaaggctttacatttgtatcgttgactaac 57017

                                                              
Query: 621   aaataaacaagttctagggcccttttgcgaatgggggcatcggcatcct 669
             ||| |||||||||| |||||||| |||||||| |  ||||| |||||||
Sbjct: 57018 aaaaaaacaagttcaagggccctcttgcgaatagaagcatctgcatcct 57066



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 85/96 (88%), Gaps = 1/96 (1%)
 Strand = Plus / Plus

                                                                         
Query: 667   cctttacacactccaatattgacaccctgtgcctctgtactgcttgtgtatctactataa 726
             ||||||||||||||||||||| |  |||||| ||||||||||| |||||||||||  |||
Sbjct: 57527 cctttacacactccaatattgtcgtcctgtgtctctgtactgcctgtgtatctacagtaa 57586

                                                 
Query: 727   t-gccgtcataagtatgttcagagcaacatatctga 761
             | ||| ||||||| |||||||||||||| |||||||
Sbjct: 57587 tggccctcataagcatgttcagagcaacgtatctga 57622



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                                 
Query: 452   ggataaaaccttgaacatctgatcaagataccataacttttcttgagaaaac 503
             ||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 56770 ggataaaaccttgaacatctgatcaaggtaccataacttctcttgagaaaac 56821
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>ref|XM_550363.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3082

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 116/139 (83%), Gaps = 1/139 (0%)
 Strand = Plus / Minus

                                                                        
Query: 624  taaacaagttctagggcccttttgcgaatgggggcatcggcatcctttacacactccaat 683
            ||||||||||| ||||||||||||||||| |   |||| |||||||| |||||||| |||
Sbjct: 1322 taaacaagttcaagggcccttttgcgaatagatacatcagcatccttgacacactctaat 1263

                                                                        
Query: 684  attgacaccctgtgcctctgtactgcttgtgtatcta-ctataatgccgtcataagtatg 742
            ||||   | || |||||||| |||||||| || |||| ||  |  ||| ||||||| |||
Sbjct: 1262 attgttgctctatgcctctgcactgcttgcgtgtctacctccatggccttcataagcatg 1203

                               
Query: 743  ttcagagcaacatatctga 761
            |||||||||||||||||||
Sbjct: 1202 ttcagagcaacatatctga 1184



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 81/98 (82%)
 Strand = Plus / Minus

                                                                        
Query: 453  gataaaaccttgaacatctgatcaagataccataacttttcttgagaaaacttttcagcc 512
            |||||||||||||||||||| || |  ||||| |  || ||||| |||||||||||| | 
Sbjct: 1493 gataaaaccttgaacatctggtctaagtaccaaagtttatcttgggaaaacttttcaaca 1434

                                                  
Query: 513  atagagcatatcttggctctgagatcttctttgaagtc 550
            || ||||||||||| ||| |||| || || ||||||||
Sbjct: 1433 attgagcatatctttgctgtgaggtcgtccttgaagtc 1396
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>dbj|AK101686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058P13, full
            insert sequence
          Length = 3082

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 116/139 (83%), Gaps = 1/139 (0%)
 Strand = Plus / Minus

                                                                        
Query: 624  taaacaagttctagggcccttttgcgaatgggggcatcggcatcctttacacactccaat 683
            ||||||||||| ||||||||||||||||| |   |||| |||||||| |||||||| |||
Sbjct: 1322 taaacaagttcaagggcccttttgcgaatagatacatcagcatccttgacacactctaat 1263

                                                                        
Query: 684  attgacaccctgtgcctctgtactgcttgtgtatcta-ctataatgccgtcataagtatg 742
            ||||   | || |||||||| |||||||| || |||| ||  |  ||| ||||||| |||
Sbjct: 1262 attgttgctctatgcctctgcactgcttgcgtgtctacctccatggccttcataagcatg 1203

                               
Query: 743  ttcagagcaacatatctga 761
            |||||||||||||||||||
Sbjct: 1202 ttcagagcaacatatctga 1184



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 81/98 (82%)
 Strand = Plus / Minus

                                                                        
Query: 453  gataaaaccttgaacatctgatcaagataccataacttttcttgagaaaacttttcagcc 512
            |||||||||||||||||||| || |  ||||| |  || ||||| |||||||||||| | 
Sbjct: 1493 gataaaaccttgaacatctggtctaagtaccaaagtttatcttgggaaaacttttcaaca 1434

                                                  
Query: 513  atagagcatatcttggctctgagatcttctttgaagtc 550
            || ||||||||||| ||| |||| || || ||||||||
Sbjct: 1433 attgagcatatctttgctgtgaggtcgtccttgaagtc 1396
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>gb|AY109399.1| Zea mays CL499_1 mRNA sequence
          Length = 2962

 Score = 83.8 bits (42), Expect = 8e-13
 Identities = 136/166 (81%), Gaps = 1/166 (0%)
 Strand = Plus / Minus

                                                                        
Query: 595  gctttacattagtatcattgaccaacaaataaacaagttctagggcccttttgcgaatgg 654
            |||||||||| ||||| ||||| |  |  ||||||||||| ||||||||||| ||||| |
Sbjct: 1360 gctttacatttgtatcgttgacaagtaggtaaacaagttccagggcccttttacgaatag 1301

                                                                        
Query: 655  gggcatcggcatcctttacacactccaatattgacaccctgtgcctctgtactgcttgtg 714
               |||| |||||||| |||||||| |||||||   ||||||||||||| || |||||||
Sbjct: 1300 aaacatctgcatccttgacacactctaatattgttgccctgtgcctctgcaccgcttgtg 1241

                                                          
Query: 715  tatctactataat-gccgtcataagtatgttcagagcaacatatct 759
            | |||||   ||| ||| ||||||| ||||| || |||||||||||
Sbjct: 1240 tgtctacagcaatggccttcataagcatgtttagggcaacatatct 1195
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>ref|NM_188205.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 633

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                       
Query: 297 ccattgatatcctgtgtgagaatgagatcaggcgatgcatcaaaatcactatgcccaatc 356
           ||||||| |||||  || || ||||||||||| |  |||||||||||||| |||||||||
Sbjct: 611 ccattgaaatcctccgtcaggatgagatcaggagcagcatcaaaatcactgtgcccaatc 552

                          
Query: 357 accgagaacaaaatc 371
           |||||||||||||||
Sbjct: 551 accgagaacaaaatc 537
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                            
Query: 297      ccattgatatcctgtgtgagaatgagatcaggcgatgcatcaaaatcactatgcccaatc 356
                ||||||| |||||  || || ||||||||||| |  |||||||||||||| |||||||||
Sbjct: 13229181 ccattgaaatcctccgtcaggatgagatcaggagcagcatcaaaatcactgtgcccaatc 13229240

                               
Query: 357      accgagaacaaaatc 371
                |||||||||||||||
Sbjct: 13229241 accgagaacaaaatc 13229255
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>dbj|AP005168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0066B06
          Length = 154025

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                          
Query: 297    ccattgatatcctgtgtgagaatgagatcaggcgatgcatcaaaatcactatgcccaatc 356
              ||||||| |||||  || || ||||||||||| |  |||||||||||||| |||||||||
Sbjct: 147508 ccattgaaatcctccgtcaggatgagatcaggagcagcatcaaaatcactgtgcccaatc 147567

                             
Query: 357    accgagaacaaaatc 371
              |||||||||||||||
Sbjct: 147568 accgagaacaaaatc 147582
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>dbj|AP004264.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0025D09
          Length = 142593

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                         
Query: 297   ccattgatatcctgtgtgagaatgagatcaggcgatgcatcaaaatcactatgcccaatc 356
             ||||||| |||||  || || ||||||||||| |  |||||||||||||| |||||||||
Sbjct: 17044 ccattgaaatcctccgtcaggatgagatcaggagcagcatcaaaatcactgtgcccaatc 17103

                            
Query: 357   accgagaacaaaatc 371
             |||||||||||||||
Sbjct: 17104 accgagaacaaaatc 17118
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>dbj|AK120134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027E07, full
           insert sequence
          Length = 3987

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                       
Query: 297 ccattgatatcctgtgtgagaatgagatcaggcgatgcatcaaaatcactatgcccaatc 356
           ||||||| |||||  || || ||||||||||| |  |||||||||||||| |||||||||
Sbjct: 667 ccattgaaatcctccgtcaggatgagatcaggagcagcatcaaaatcactgtgcccaatc 608

                          
Query: 357 accgagaacaaaatc 371
           |||||||||||||||
Sbjct: 607 accgagaacaaaatc 593
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>dbj|AP004336.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0498D08, complete sequence
          Length = 53801

 Score = 77.8 bits (39), Expect = 5e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                         
Query: 297   ccattgatatcctgtgtgagaatgagatcaggcgatgcatcaaaatcactatgcccaatc 356
             ||||||| |||||  || || ||||||||||| |  |||||||||||||| |||||||||
Sbjct: 45503 ccattgaaatcctccgtcaggatgagatcaggagcagcatcaaaatcactgtgcccaatc 45562

                            
Query: 357   accgagaacaaaatc 371
             |||||||||||||||
Sbjct: 45563 accgagaacaaaatc 45577
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>ref|NM_102238.2| Arabidopsis thaliana GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); clathrin
            binding AT1G23900 (GAMMA-ADAPTIN 1) transcript variant
            AT1G23900.1 mRNA, complete cds
          Length = 3141

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 458  aaccttgaacatctgatcaagataccataacttttcttgagaaaacttttca 509
            |||||||| |||||||||||  |||||||  |||||| ||||||||||||||
Sbjct: 1430 aaccttgagcatctgatcaatgtaccatagtttttctggagaaaacttttca 1379
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>ref|NM_179370.2| Arabidopsis thaliana GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); clathrin
            binding AT1G23900 (GAMMA-ADAPTIN 1) transcript variant
            AT1G23900.2 mRNA, complete cds
          Length = 3211

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 458  aaccttgaacatctgatcaagataccataacttttcttgagaaaacttttca 509
            |||||||| |||||||||||  |||||||  |||||| ||||||||||||||
Sbjct: 1500 aaccttgagcatctgatcaatgtaccatagtttttctggagaaaacttttca 1449
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>emb|AJ133777.1|ATH133777 Arabidopsis thaliana mRNA for gamma-adaptin 2
          Length = 3100

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 458  aaccttgaacatctgatcaagataccataacttttcttgagaaaacttttca 509
            |||||||| |||||||||||  |||||||  |||||| ||||||||||||||
Sbjct: 1422 aaccttgagcatctgatcaatgtaccatagtttttctggagaaaacttttca 1371
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>gb|BT005557.1| Arabidopsis thaliana clone U50014 putative gamma-adaptin (At1g23900)
            mRNA, complete cds
          Length = 2662

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 458  aaccttgaacatctgatcaagataccataacttttcttgagaaaacttttca 509
            |||||||| |||||||||||  |||||||  |||||| ||||||||||||||
Sbjct: 1287 aaccttgagcatctgatcaatgtaccatagtttttctggagaaaacttttca 1236
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>gb|BT004307.1| Arabidopsis thaliana clone RAFL16-01-N23 (R50014) putative
            gamma-adaptin (At1g23900) mRNA, complete cds
          Length = 3236

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 458  aaccttgaacatctgatcaagataccataacttttcttgagaaaacttttca 509
            |||||||| |||||||||||  |||||||  |||||| ||||||||||||||
Sbjct: 1503 aaccttgagcatctgatcaatgtaccatagtttttctggagaaaacttttca 1452
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>gb|AF124524.1|AF124524 Arabidopsis thaliana gamma-adaptin 1 gene, complete cds
          Length = 7510

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 458  aaccttgaacatctgatcaagataccataacttttcttgagaaaacttttca 509
            |||||||| |||||||||||  |||||||  |||||| ||||||||||||||
Sbjct: 3801 aaccttgagcatctgatcaatgtaccatagtttttctggagaaaacttttca 3750
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>gb|AF061286.1|AF061286 Arabidopsis thaliana gamma-adaptin 1 mRNA, complete cds
          Length = 3213

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 458  aaccttgaacatctgatcaagataccataacttttcttgagaaaacttttca 509
            |||||||| |||||||||||  |||||||  |||||| ||||||||||||||
Sbjct: 1437 aaccttgagcatctgatcaatgtaccatagtttttctggagaaaacttttca 1386
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                             
Query: 732     tcataagtatgttcagagcaacatatctga 761
               ||||||| ||||||||||||||||||||||
Sbjct: 3379534 tcataagcatgttcagagcaacatatctga 3379505



 Score = 50.1 bits (25), Expect = 0.011
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                            
Query: 624     taaacaagttctagggcccttttgcgaat 652
               ||||||||||| |||||||||||||||||
Sbjct: 3380066 taaacaagttcaagggcccttttgcgaat 3380038
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>dbj|AB023482.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone
             P0680A03
          Length = 156054

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                           
Query: 732   tcataagtatgttcagagcaacatatctga 761
             ||||||| ||||||||||||||||||||||
Sbjct: 71088 tcataagcatgttcagagcaacatatctga 71059



 Score = 50.1 bits (25), Expect = 0.011
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 624   taaacaagttctagggcccttttgcgaat 652
             ||||||||||| |||||||||||||||||
Sbjct: 71620 taaacaagttcaagggcccttttgcgaat 71592
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>gb|AC002423.3|AC002423 Genomic sequence for Arabidopsis thaliana BAC T23E23, complete sequence
          Length = 99254

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                           
Query: 458   aaccttgaacatctgatcaagataccataacttttcttgagaaaac 503
             |||||||| |||||||||||  |||||||  |||||| ||||||||
Sbjct: 19032 aaccttgagcatctgatcaatgtaccatagtttttctggagaaaac 18987
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>emb|BX072532.7| Zebrafish DNA sequence from clone CH211-10B9 in linkage group 12,
             complete sequence
          Length = 160268

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 415   cttctcaaagtgtttctttcag 436
             ||||||||||||||||||||||
Sbjct: 29212 cttctcaaagtgtttctttcag 29233
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>dbj|AP006632.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT16I03, TM0056,
             complete sequence
          Length = 102883

 Score = 44.1 bits (22), Expect = 0.67
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                       
Query: 595   gctttacattagtatcattgaccaacaaataaacaagttctagggcccttttgcgaat 652
             |||| |||||||| ||||| ||||  |  ||||||||||| ||||||||||| |||||
Sbjct: 71268 gcttcacattagtttcattcaccagaacgtaaacaagttcaagggcccttttccgaat 71325
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>gb|AC167537.7| Mus musculus chromosome 8, clone RP23-99B10, complete sequence
          Length = 201791

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 425   tgtttctttcagcatatgcca 445
             |||||||||||||||||||||
Sbjct: 74908 tgtttctttcagcatatgcca 74888
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>gb|AC166782.4| Mus musculus chromosome 8, clone wi1-146O13, complete sequence
          Length = 37508

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 425   tgtttctttcagcatatgcca 445
             |||||||||||||||||||||
Sbjct: 19995 tgtttctttcagcatatgcca 19975
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>ref|XM_658361.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5849.2), mRNA
          Length = 3174

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 459 accttgaacatctgatcaaga 479
           |||||||||||||||||||||
Sbjct: 944 accttgaacatctgatcaaga 924
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>gb|AC008282.4| Homo sapiens BAC clone RP11-516B14 from 2, complete sequence
          Length = 203241

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 143   tgtatctacatgcacaaagtg 163
             |||||||||||||||||||||
Sbjct: 83660 tgtatctacatgcacaaagtg 83680
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>gb|AC068943.4| Homo sapiens BAC clone RP11-769M2 from 2, complete sequence
          Length = 72719

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 406   atttgtcttcttctcaaagtg 426
             |||||||||||||||||||||
Sbjct: 49402 atttgtcttcttctcaaagtg 49382
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>emb|BX470164.10| Zebrafish DNA sequence from clone DKEY-24L11 in linkage group 18,
              complete sequence
          Length = 248419

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 169    ttcgaaacactcgaaacacca 189
              |||||||||||||||||||||
Sbjct: 166894 ttcgaaacactcgaaacacca 166914
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>emb|CT009564.11| Mouse DNA sequence from clone RP23-16F13 on chromosome 17, complete
             sequence
          Length = 157729

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 490   tttcttgagaaaacttttcag 510
             |||||||||||||||||||||
Sbjct: 88910 tttcttgagaaaacttttcag 88890
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>emb|CR385047.19| Zebrafish DNA sequence from clone DKEY-221N16 in linkage group 18,
              complete sequence
          Length = 193827

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 169    ttcgaaacactcgaaacacca 189
              |||||||||||||||||||||
Sbjct: 186470 ttcgaaacactcgaaacacca 186490


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,972,494
Number of Sequences: 3902068
Number of extensions: 6972494
Number of successful extensions: 179947
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 179758
Number of HSP's gapped (non-prelim): 176
length of query: 762
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 739
effective length of database: 17,143,297,704
effective search space: 12668897003256
effective search space used: 12668897003256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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