ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20o04 |
|---|---|
| Clone Library Name | barley_pub |
>VG50_ICHV1 (Q00130) Hypothetical gene 50 protein| Length = 670 Score = 32.7 bits (73), Expect = 0.23 Identities = 17/50 (34%), Positives = 20/50 (40%) Frame = -1 Query: 278 PSSIPLINEQQLDGALXLQHRXGARPLPLAPGSPVAVLAVVGDVAPGSVH 129 PSS+P + G RP P PG P + V PGSVH Sbjct: 75 PSSLPRTTPSLAHTTISKMISLGTRPRPTIPGVPTTIPNTDAPVDPGSVH 124
>S6A17_RAT (P31662) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT4 (Solute carrier family 6 member 17) Length = 727 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = -2 Query: 241 TGLXFSSIGXELAHFPSPPALQSQFWLWLVTWHLGLFIALTFG 113 TGL F + + HFP+ P F+L L+ LG I G Sbjct: 438 TGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGSMIGTMAG 480
>S6A17_MOUSE (Q8BJI1) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT4 (Solute carrier family 6 member 17) Length = 727 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = -2 Query: 241 TGLXFSSIGXELAHFPSPPALQSQFWLWLVTWHLGLFIALTFG 113 TGL F + + HFP+ P F+L L+ LG I G Sbjct: 438 TGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGSMIGTMAG 480
>S6A17_HUMAN (Q9H1V8) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT4 (Solute carrier family 6 member 17) Length = 727 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = -2 Query: 241 TGLXFSSIGXELAHFPSPPALQSQFWLWLVTWHLGLFIALTFG 113 TGL F + + HFP+ P F+L L+ LG I G Sbjct: 438 TGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGSMIGTMAG 480
>FRQ_SORFI (Q09033) Frequency clock protein| Length = 997 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/23 (60%), Positives = 15/23 (65%) Frame = +1 Query: 136 DPGATSPTTARTATGEPGARGSG 204 +PG SPT TATGE A GSG Sbjct: 669 EPGDMSPTEQMTATGEQEASGSG 691
>CHIF_DROME (Q9NK54) Protein chiffon| Length = 1711 Score = 30.0 bits (66), Expect = 1.5 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = +2 Query: 59 VNPLLLEVVLGPALEPDLAEGERDEQTQVPRHQPQPELRLESR 187 VN L E + L+ D+ E +E+ Q PR +P P LR +S+ Sbjct: 356 VNRFLEEEPVESELDMDVDESLSNEELQSPRQRPSPALREKSK 398
>CASB_RABIT (P09116) Beta-casein precursor| Length = 228 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/42 (30%), Positives = 28/42 (66%) Frame = +2 Query: 50 QKLVNPLLLEVVLGPALEPDLAEGERDEQTQVPRHQPQPELR 175 Q ++N L+++L P L+P++ E + ++T +P+H+ P L+ Sbjct: 85 QNILNLAQLDMLL-PLLQPEIMEDPKAKETIIPKHKLMPFLK 125
>RBFAL_MOUSE (Q6P3B9) Putative ribosome-binding factor A, mitochondrial| precursor Length = 350 Score = 29.6 bits (65), Expect = 2.0 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +2 Query: 59 VNPLLLEVVLGPALEPDLAEGERDEQTQVPRHQPQP 166 V+ LL E GP E D +G R+ QVP P+P Sbjct: 195 VDRLLAEADFGPPDERDDLDGLRNADAQVPHDSPEP 230
>S6A15_BOVIN (Q9XS59) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT73 (Orphan transporter v7-3) (Solute carrier family 6 member 15) Length = 729 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -2 Query: 241 TGLXFSSIGXELAHFPSPPALQSQFWLWLVTWHLG 137 TGL F + + HFP+ P F+L LV LG Sbjct: 439 TGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLG 473
>S6A15_HUMAN (Q9H2J7) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT73 (Orphan transporter v7-3) (Solute carrier family 6 member 15) Length = 730 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -2 Query: 241 TGLXFSSIGXELAHFPSPPALQSQFWLWLVTWHLG 137 TGL F + + HFP+ P F+L LV LG Sbjct: 439 TGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLG 473
>RYR1_HUMAN (P21817) Ryanodine receptor 1 (Skeletal muscle-type ryanodine| receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release channel) Length = 5038 Score = 28.9 bits (63), Expect = 3.3 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +2 Query: 92 PALEPDLAEGERDEQTQVPRHQPQP 166 P LEP+ A+ E E+ +VP P+P Sbjct: 4497 PELEPEKADAENGEKEEVPEPTPEP 4521
>S6A15_RAT (Q08469) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT73 (Orphan transporter v7-3) (Solute carrier family 6 member 15) Length = 729 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -2 Query: 241 TGLXFSSIGXELAHFPSPPALQSQFWLWLVTWHLG 137 TGL F + + HFP+ P F+L L+ LG Sbjct: 439 TGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLG 473
>S6A15_MOUSE (Q8BG16) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT73 (Orphan transporter v7-3) (Solute carrier family 6 member 15) Length = 729 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -2 Query: 241 TGLXFSSIGXELAHFPSPPALQSQFWLWLVTWHLG 137 TGL F + + HFP+ P F+L L+ LG Sbjct: 439 TGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLG 473
>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase (EC| 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3262 Score = 28.9 bits (63), Expect = 3.3 Identities = 22/57 (38%), Positives = 26/57 (45%) Frame = +2 Query: 71 LLEVVLGPALEPDLAEGERDEQTQVPRHQPQPELRLESRGRGEVGELLADAGEXEPR 241 LLE + G A +P +A E P HQP P ESRG + GE EPR Sbjct: 2096 LLESLGGRARDPRMARAASSEAA--PHHQPPP----ESRGLQKSSSF--SQGEAEPR 2144
>SPEG_RAT (Q63638) Striated muscle-specific serine/threonine protein kinase (EC| 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3259 Score = 28.9 bits (63), Expect = 3.3 Identities = 22/57 (38%), Positives = 26/57 (45%) Frame = +2 Query: 71 LLEVVLGPALEPDLAEGERDEQTQVPRHQPQPELRLESRGRGEVGELLADAGEXEPR 241 LLE + G A +P +A E P HQP P ESRG + GE EPR Sbjct: 2096 LLESLGGRARDPRMARAASSEAA--PHHQPPP----ESRGLQKSSSF--SQGEAEPR 2144
>RNPA_XANAC (Q8PEH6) Ribonuclease P protein component (EC 3.1.26.5) (RNaseP| protein) (RNase P protein) (Protein C5) Length = 145 Score = 28.5 bits (62), Expect = 4.4 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = -1 Query: 257 NEQQLDGALXLQHRXGARPLPLAPGS 180 N Q D L L HR GA PLP A G+ Sbjct: 101 NPQIRDAFLRLLHRAGALPLPAAAGT 126
>GRIN1_HUMAN (Q7Z2K8) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)| Length = 1008 Score = 28.5 bits (62), Expect = 4.4 Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 1/82 (1%) Frame = +2 Query: 89 GPALEPDLAEGERDEQTQVPRHQPQPELRLESRGRGEVGELLADAGEXEPRQAVAR*SAG 268 G + D ++ PRH P +ESR R G AGE A Sbjct: 38 GSSAMRDYCPSQQKASPAPPRHTPDQSPGMESRHRSPSG-----AGE----------GAS 82 Query: 269 CSTAP-ATRSCPNPITFXSLRS 331 CS P + +CP+P F S Sbjct: 83 CSDGPRGSLACPSPTCFSPQES 104
>SUOX_MACFA (Q60HD0) Sulfite oxidase, mitochondrial precursor (EC 1.8.3.1)| Length = 488 Score = 28.1 bits (61), Expect = 5.7 Identities = 17/54 (31%), Positives = 24/54 (44%) Frame = -1 Query: 275 SSIPLINEQQLDGALXLQHRXGARPLPLAPGSPVAVLAVVGDVAPGSVHRAHLR 114 +SIPL + + L + +PLP G PV V V PG V H++ Sbjct: 275 ASIPLARAMDPEAGVLLAYEMNGQPLPRDHGFPVRV------VVPGVVGARHVK 322
>ETR1_TOBAC (O48929) Ethylene receptor (EC 2.7.13.3) (NT-ETR1)| Length = 738 Score = 28.1 bits (61), Expect = 5.7 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = -1 Query: 293 IGWLAPSSIPLINEQQLDGALXLQHRXGARPLPLAPGSPVAVLAVVGDVAPGSV 132 IG+ P +P+IN Q+ G R + ++P SPVA L G PG V Sbjct: 202 IGFTVPIQLPVIN--QVFGT--------NRAVKISPNSPVARLRPAGKYMPGEV 245
>CASB_RAT (P02665) Beta-casein precursor| Length = 231 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/46 (30%), Positives = 25/46 (54%) Frame = +2 Query: 47 IQKLVNPLLLEVVLGPALEPDLAEGERDEQTQVPRHQPQPELRLES 184 IQ + P ++ V GP + P+L + + T +P+H+ P L E+ Sbjct: 88 IQPIAQPPVVPTV-GPIISPELESFLKAKATVLPKHKQMPFLNSET 132
>SUOX_MOUSE (Q8R086) Sulfite oxidase, mitochondrial precursor (EC 1.8.3.1)| Length = 488 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/54 (31%), Positives = 24/54 (44%) Frame = -1 Query: 275 SSIPLINEQQLDGALXLQHRXGARPLPLAPGSPVAVLAVVGDVAPGSVHRAHLR 114 +SIPL + + L + +PLP G PV V V PG V H++ Sbjct: 275 ASIPLARAMDPEAEVLLAYEMNGQPLPRDHGFPVRV------VVPGVVGARHVK 322
>SUOX_HUMAN (P51687) Sulfite oxidase, mitochondrial precursor (EC 1.8.3.1)| Length = 488 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/54 (31%), Positives = 24/54 (44%) Frame = -1 Query: 275 SSIPLINEQQLDGALXLQHRXGARPLPLAPGSPVAVLAVVGDVAPGSVHRAHLR 114 +SIPL + + L + +PLP G PV V V PG V H++ Sbjct: 275 ASIPLARAMDPEAEVLLAYEMNGQPLPRDHGFPVRV------VVPGVVGARHVK 322
>MARCS_MOUSE (P26645) Myristoylated alanine-rich C-kinase substrate (MARCKS)| Length = 308 Score = 27.7 bits (60), Expect = 7.4 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 9/82 (10%) Frame = +2 Query: 89 GPALEPDLAEGERDEQTQVPR-HQPQPELRLESRGR--------GEVGELLADAGEXEPR 241 G E + AE E+ EQ + P +PQ E + E+ G G+ + AG + Sbjct: 215 GEPREAEAAEPEQPEQPEQPAAEEPQAEEQSEAAGEKAEEPAPGATAGDASSAAGPEQEA 274 Query: 242 QAVAR*SAGCSTAPATRSCPNP 307 A A A S APA P P Sbjct: 275 PA-ATDEAAASAAPAASPEPQP 295
>DTNB_MOUSE (O70585) Dystrobrevin beta (Beta-dystrobrevin) (DTN-B) (MDTN-B)| Length = 700 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 3/40 (7%) Frame = +3 Query: 141 RCHVTNHSQNCDWRAGGEGKWASSXPMLEX---KSPVKLL 251 +CH QNC WR G ++ M E KSP K L Sbjct: 260 QCHNYQLCQNCFWRGHASGAHSNQHQMKEHSSWKSPAKKL 299
>UVRC_CORDI (Q6NH31) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 687 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = -1 Query: 194 LAPGSPVAVLAVVGDVAPGSVHRAHLRPDRVQGQDRGLLPEVVD 63 L G+ V+AV D S+ H+R +++GQ RG + E D Sbjct: 251 LGDGTDADVIAVAADDLEASIQLFHVRSGKIRGQ-RGWIVERTD 293
>HCN3_HUMAN (Q9P1Z3) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 3 Length = 774 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -1 Query: 236 ALXLQHRXGARPLPLAPGSPVAVLA 162 A+ L H+ G PLPL+P SP +LA Sbjct: 621 AIALTHQRG--PLPLSPDSPATLLA 643
>EX7L_RHOBA (Q7UTZ9) Probable exodeoxyribonuclease VII large subunit (EC| 3.1.11.6) (Exonuclease VII large subunit) Length = 442 Score = 27.3 bits (59), Expect = 9.7 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%) Frame = +2 Query: 74 LEVVLGPALE--PDLAEGERDEQTQVPRHQPQPELRLESRGRGEVGEL 211 +E+VL PA P E D R +PQP++ + SRG G + +L Sbjct: 198 IEIVLIPASVQGPGSVESLIDGMRAAHRMRPQPDVLIVSRGGGSLEDL 245
>PAPA2_CARPA (P14080) Chymopapain precursor (EC 3.4.22.6) (Papaya proteinase II)| (PPII) Length = 352 Score = 27.3 bits (59), Expect = 9.7 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = +3 Query: 147 HVTNHSQNCDWRAGG 191 HVTN+ Q+ DWRA G Sbjct: 131 HVTNYPQSIDWRAKG 145
>LASS3_HUMAN (Q8IU89) LAG1 longevity assurance homolog 3| Length = 383 Score = 27.3 bits (59), Expect = 9.7 Identities = 17/66 (25%), Positives = 34/66 (51%) Frame = -2 Query: 199 FPSPPALQSQFWLWLVTWHLGLFIALTFGQIGFKGRTEDYFQK*WIN*LLDHACASSLLV 20 +P P L SQ+W +++ + + +L F ++GF + +D+ ++ H A SL+ Sbjct: 169 YPKQPLLPSQYWYYIL--EMSFYWSLLF-RLGFDVKRKDFLAH-----IIHHLAAISLMS 220 Query: 19 LGYFCA 2 + CA Sbjct: 221 FSW-CA 225
>HCN3_MOUSE (O88705) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 3 (Hyperpolarization-activated cation channel 3) (HAC-3) Length = 779 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -1 Query: 236 ALXLQHRXGARPLPLAPGSPVAVLA 162 A+ L H+ G PLPL+P SP +LA Sbjct: 620 AIALTHQRG--PLPLSPDSPATLLA 642
>RNPA_XANCP (Q8P337) Ribonuclease P protein component (EC 3.1.26.5) (RNaseP| protein) (RNase P protein) (Protein C5) Length = 148 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -1 Query: 257 NEQQLDGALXLQHRXGARPLPLAPGS 180 N Q D + L R GA PLP APG+ Sbjct: 101 NPQIRDAFVRLLRRAGALPLPAAPGT 126
>HCN3_RAT (Q9JKA8) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 3 Length = 780 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -1 Query: 236 ALXLQHRXGARPLPLAPGSPVAVLA 162 A+ L H+ G PLPL+P SP +LA Sbjct: 621 AIALTHQRG--PLPLSPDSPATLLA 643 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,512,255 Number of Sequences: 219361 Number of extensions: 809420 Number of successful extensions: 3165 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 2820 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3165 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
