ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21d03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_506943.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_D06.19 mRNA Length = 1716 Score = 242 bits (122), Expect = 1e-60 Identities = 257/302 (85%) Strand = Plus / Plus Query: 226 acgtcgtagagcacctcaagggtcctctgctgcacgttgccgatgatgccggtgcttccg 285 |||||||| || ||||| | |||| |||||||||||| ||||||||||||||| | ||| Sbjct: 325 acgtcgtacaggacctcgaacgtccgctgctgcacgttcccgatgatgccggtggtcccg 384 Query: 286 tcgtcgccggtgtccgtgaacgcgaggcagctgccgaatatgatcccgttggcgtcgagg 345 |||||||||||| | | ||||||||||||| ||||| | ||||||||||| | ||||||| Sbjct: 385 tcgtcgccggtggcggcgaacgcgaggcagttgccgtacatgatcccgttcgggtcgagg 444 Query: 346 tcgacgaccttgccgccgtcgaacaccaaagcgacggtgggtatggtgacgttgtcctgg 405 |||| | | ||||||| |||||||| |||||||| ||||||| || | | |||| Sbjct: 445 tcgatggcggcgccgccggagaacaccagcgcgacggtcggtatggagatctgggtctgg 504 Query: 406 ccgctgaagtcgaagcacgtgtccaggatgctcctggccggcgccgtcgggtactgcttc 465 ||| |||||||||||||||||| |||||||||||||||||||||| | ||||||||||| Sbjct: 505 ccggcgaagtcgaagcacgtgtcgaggatgctcctggccggcgccgaccggtactgcttc 564 Query: 466 atgccgtccttgaacgccgtcttgagcgccgtgtacgccgtgggcggcagccgcgtgatg 525 |||||| |||||||||||| | ||||||| ||||||||| |||||||||||||||||| Sbjct: 565 atgccggccttgaacgccgacgacagcgccgagtacgccgtcggcggcagccgcgtgatg 624 Query: 526 at 527 || Sbjct: 625 at 626 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 76 cttacctcgcaactagaaacaagaagacaaccacatgagagcagccta 123 ||||||||||||| | ||||||| |||| |||||||||||||| |||| Sbjct: 162 cttacctcgcaaccacaaacaagtagacgaccacatgagagcaaccta 209
>ref|XM_467513.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1716 Score = 242 bits (122), Expect = 1e-60 Identities = 257/302 (85%) Strand = Plus / Minus Query: 226 acgtcgtagagcacctcaagggtcctctgctgcacgttgccgatgatgccggtgcttccg 285 |||||||| || ||||| | |||| |||||||||||| ||||||||||||||| | ||| Sbjct: 1392 acgtcgtacaggacctcgaacgtccgctgctgcacgttcccgatgatgccggtggtcccg 1333 Query: 286 tcgtcgccggtgtccgtgaacgcgaggcagctgccgaatatgatcccgttggcgtcgagg 345 |||||||||||| | | ||||||||||||| ||||| | ||||||||||| | ||||||| Sbjct: 1332 tcgtcgccggtggcggcgaacgcgaggcagttgccgtacatgatcccgttcgggtcgagg 1273 Query: 346 tcgacgaccttgccgccgtcgaacaccaaagcgacggtgggtatggtgacgttgtcctgg 405 |||| | | ||||||| |||||||| |||||||| ||||||| || | | |||| Sbjct: 1272 tcgatggcggcgccgccggagaacaccagcgcgacggtcggtatggagatctgggtctgg 1213 Query: 406 ccgctgaagtcgaagcacgtgtccaggatgctcctggccggcgccgtcgggtactgcttc 465 ||| |||||||||||||||||| |||||||||||||||||||||| | ||||||||||| Sbjct: 1212 ccggcgaagtcgaagcacgtgtcgaggatgctcctggccggcgccgaccggtactgcttc 1153 Query: 466 atgccgtccttgaacgccgtcttgagcgccgtgtacgccgtgggcggcagccgcgtgatg 525 |||||| |||||||||||| | ||||||| ||||||||| |||||||||||||||||| Sbjct: 1152 atgccggccttgaacgccgacgacagcgccgagtacgccgtcggcggcagccgcgtgatg 1093 Query: 526 at 527 || Sbjct: 1092 at 1091 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 76 cttacctcgcaactagaaacaagaagacaaccacatgagagcagccta 123 ||||||||||||| | ||||||| |||| |||||||||||||| |||| Sbjct: 1555 cttacctcgcaaccacaaacaagtagacgaccacatgagagcaaccta 1508
>ref|XM_506944.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_D06.19 mRNA Length = 1737 Score = 242 bits (122), Expect = 1e-60 Identities = 257/302 (85%) Strand = Plus / Minus Query: 226 acgtcgtagagcacctcaagggtcctctgctgcacgttgccgatgatgccggtgcttccg 285 |||||||| || ||||| | |||| |||||||||||| ||||||||||||||| | ||| Sbjct: 1398 acgtcgtacaggacctcgaacgtccgctgctgcacgttcccgatgatgccggtggtcccg 1339 Query: 286 tcgtcgccggtgtccgtgaacgcgaggcagctgccgaatatgatcccgttggcgtcgagg 345 |||||||||||| | | ||||||||||||| ||||| | ||||||||||| | ||||||| Sbjct: 1338 tcgtcgccggtggcggcgaacgcgaggcagttgccgtacatgatcccgttcgggtcgagg 1279 Query: 346 tcgacgaccttgccgccgtcgaacaccaaagcgacggtgggtatggtgacgttgtcctgg 405 |||| | | ||||||| |||||||| |||||||| ||||||| || | | |||| Sbjct: 1278 tcgatggcggcgccgccggagaacaccagcgcgacggtcggtatggagatctgggtctgg 1219 Query: 406 ccgctgaagtcgaagcacgtgtccaggatgctcctggccggcgccgtcgggtactgcttc 465 ||| |||||||||||||||||| |||||||||||||||||||||| | ||||||||||| Sbjct: 1218 ccggcgaagtcgaagcacgtgtcgaggatgctcctggccggcgccgaccggtactgcttc 1159 Query: 466 atgccgtccttgaacgccgtcttgagcgccgtgtacgccgtgggcggcagccgcgtgatg 525 |||||| |||||||||||| | ||||||| ||||||||| |||||||||||||||||| Sbjct: 1158 atgccggccttgaacgccgacgacagcgccgagtacgccgtcggcggcagccgcgtgatg 1099 Query: 526 at 527 || Sbjct: 1098 at 1097 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 76 cttacctcgcaactagaaacaagaagacaaccacatgagagcagccta 123 ||||||||||||| | ||||||| |||| |||||||||||||| |||| Sbjct: 1561 cttacctcgcaaccacaaacaagtagacgaccacatgagagcaaccta 1514
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 242 bits (122), Expect = 1e-60 Identities = 257/302 (85%) Strand = Plus / Plus Query: 226 acgtcgtagagcacctcaagggtcctctgctgcacgttgccgatgatgccggtgcttccg 285 |||||||| || ||||| | |||| |||||||||||| ||||||||||||||| | ||| Sbjct: 29911320 acgtcgtacaggacctcgaacgtccgctgctgcacgttcccgatgatgccggtggtcccg 29911379 Query: 286 tcgtcgccggtgtccgtgaacgcgaggcagctgccgaatatgatcccgttggcgtcgagg 345 |||||||||||| | | ||||||||||||| ||||| | ||||||||||| | ||||||| Sbjct: 29911380 tcgtcgccggtggcggcgaacgcgaggcagttgccgtacatgatcccgttcgggtcgagg 29911439 Query: 346 tcgacgaccttgccgccgtcgaacaccaaagcgacggtgggtatggtgacgttgtcctgg 405 |||| | | ||||||| |||||||| |||||||| ||||||| || | | |||| Sbjct: 29911440 tcgatggcggcgccgccggagaacaccagcgcgacggtcggtatggagatctgggtctgg 29911499 Query: 406 ccgctgaagtcgaagcacgtgtccaggatgctcctggccggcgccgtcgggtactgcttc 465 ||| |||||||||||||||||| |||||||||||||||||||||| | ||||||||||| Sbjct: 29911500 ccggcgaagtcgaagcacgtgtcgaggatgctcctggccggcgccgaccggtactgcttc 29911559 Query: 466 atgccgtccttgaacgccgtcttgagcgccgtgtacgccgtgggcggcagccgcgtgatg 525 |||||| |||||||||||| | ||||||| ||||||||| |||||||||||||||||| Sbjct: 29911560 atgccggccttgaacgccgacgacagcgccgagtacgccgtcggcggcagccgcgtgatg 29911619 Query: 526 at 527 || Sbjct: 29911620 at 29911621 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 490 agcgccgtgtacgccgtgggcggcagccgcgtga 523 ||||||| |||||||||||||||||||||||||| Sbjct: 29908976 agcgccgagtacgccgtgggcggcagccgcgtga 29908943 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 76 cttacctcgcaactagaaacaagaagacaaccacatgagagcagccta 123 ||||||||||||| | ||||||| |||| |||||||||||||| |||| Sbjct: 29911157 cttacctcgcaaccacaaacaagtagacgaccacatgagagcaaccta 29911204 Score = 42.1 bits (21), Expect = 1.8 Identities = 42/49 (85%) Strand = Plus / Minus Query: 410 tgaagtcgaagcacgtgtccaggatgctcctggccggcgccgtcgggta 458 |||||||| |||| ||||||||||| | | | |||||||||| |||||| Sbjct: 29909062 tgaagtcgtagcaggtgtccaggatccccgtcgccggcgccgacgggta 29909014
>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654B04 Length = 156907 Score = 242 bits (122), Expect = 1e-60 Identities = 257/302 (85%) Strand = Plus / Plus Query: 226 acgtcgtagagcacctcaagggtcctctgctgcacgttgccgatgatgccggtgcttccg 285 |||||||| || ||||| | |||| |||||||||||| ||||||||||||||| | ||| Sbjct: 11596 acgtcgtacaggacctcgaacgtccgctgctgcacgttcccgatgatgccggtggtcccg 11655 Query: 286 tcgtcgccggtgtccgtgaacgcgaggcagctgccgaatatgatcccgttggcgtcgagg 345 |||||||||||| | | ||||||||||||| ||||| | ||||||||||| | ||||||| Sbjct: 11656 tcgtcgccggtggcggcgaacgcgaggcagttgccgtacatgatcccgttcgggtcgagg 11715 Query: 346 tcgacgaccttgccgccgtcgaacaccaaagcgacggtgggtatggtgacgttgtcctgg 405 |||| | | ||||||| |||||||| |||||||| ||||||| || | | |||| Sbjct: 11716 tcgatggcggcgccgccggagaacaccagcgcgacggtcggtatggagatctgggtctgg 11775 Query: 406 ccgctgaagtcgaagcacgtgtccaggatgctcctggccggcgccgtcgggtactgcttc 465 ||| |||||||||||||||||| |||||||||||||||||||||| | ||||||||||| Sbjct: 11776 ccggcgaagtcgaagcacgtgtcgaggatgctcctggccggcgccgaccggtactgcttc 11835 Query: 466 atgccgtccttgaacgccgtcttgagcgccgtgtacgccgtgggcggcagccgcgtgatg 525 |||||| |||||||||||| | ||||||| ||||||||| |||||||||||||||||| Sbjct: 11836 atgccggccttgaacgccgacgacagcgccgagtacgccgtcggcggcagccgcgtgatg 11895 Query: 526 at 527 || Sbjct: 11896 at 11897 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 490 agcgccgtgtacgccgtgggcggcagccgcgtga 523 ||||||| |||||||||||||||||||||||||| Sbjct: 9252 agcgccgagtacgccgtgggcggcagccgcgtga 9219 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 76 cttacctcgcaactagaaacaagaagacaaccacatgagagcagccta 123 ||||||||||||| | ||||||| |||| |||||||||||||| |||| Sbjct: 11433 cttacctcgcaaccacaaacaagtagacgaccacatgagagcaaccta 11480 Score = 42.1 bits (21), Expect = 1.8 Identities = 42/49 (85%) Strand = Plus / Minus Query: 410 tgaagtcgaagcacgtgtccaggatgctcctggccggcgccgtcgggta 458 |||||||| |||| ||||||||||| | | | |||||||||| |||||| Sbjct: 9338 tgaagtcgtagcaggtgtccaggatccccgtcgccggcgccgacgggta 9290
>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1008_D06 Length = 112768 Score = 242 bits (122), Expect = 1e-60 Identities = 257/302 (85%) Strand = Plus / Plus Query: 226 acgtcgtagagcacctcaagggtcctctgctgcacgttgccgatgatgccggtgcttccg 285 |||||||| || ||||| | |||| |||||||||||| ||||||||||||||| | ||| Sbjct: 68285 acgtcgtacaggacctcgaacgtccgctgctgcacgttcccgatgatgccggtggtcccg 68344 Query: 286 tcgtcgccggtgtccgtgaacgcgaggcagctgccgaatatgatcccgttggcgtcgagg 345 |||||||||||| | | ||||||||||||| ||||| | ||||||||||| | ||||||| Sbjct: 68345 tcgtcgccggtggcggcgaacgcgaggcagttgccgtacatgatcccgttcgggtcgagg 68404 Query: 346 tcgacgaccttgccgccgtcgaacaccaaagcgacggtgggtatggtgacgttgtcctgg 405 |||| | | ||||||| |||||||| |||||||| ||||||| || | | |||| Sbjct: 68405 tcgatggcggcgccgccggagaacaccagcgcgacggtcggtatggagatctgggtctgg 68464 Query: 406 ccgctgaagtcgaagcacgtgtccaggatgctcctggccggcgccgtcgggtactgcttc 465 ||| |||||||||||||||||| |||||||||||||||||||||| | ||||||||||| Sbjct: 68465 ccggcgaagtcgaagcacgtgtcgaggatgctcctggccggcgccgaccggtactgcttc 68524 Query: 466 atgccgtccttgaacgccgtcttgagcgccgtgtacgccgtgggcggcagccgcgtgatg 525 |||||| |||||||||||| | ||||||| ||||||||| |||||||||||||||||| Sbjct: 68525 atgccggccttgaacgccgacgacagcgccgagtacgccgtcggcggcagccgcgtgatg 68584 Query: 526 at 527 || Sbjct: 68585 at 68586 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 490 agcgccgtgtacgccgtgggcggcagccgcgtga 523 ||||||| |||||||||||||||||||||||||| Sbjct: 65941 agcgccgagtacgccgtgggcggcagccgcgtga 65908 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 76 cttacctcgcaactagaaacaagaagacaaccacatgagagcagccta 123 ||||||||||||| | ||||||| |||| |||||||||||||| |||| Sbjct: 68122 cttacctcgcaaccacaaacaagtagacgaccacatgagagcaaccta 68169 Score = 42.1 bits (21), Expect = 1.8 Identities = 42/49 (85%) Strand = Plus / Minus Query: 410 tgaagtcgaagcacgtgtccaggatgctcctggccggcgccgtcgggta 458 |||||||| |||| ||||||||||| | | | |||||||||| |||||| Sbjct: 66027 tgaagtcgtagcaggtgtccaggatccccgtcgccggcgccgacgggta 65979
>dbj|AK105989.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-G11, full insert sequence Length = 1716 Score = 242 bits (122), Expect = 1e-60 Identities = 257/302 (85%) Strand = Plus / Minus Query: 226 acgtcgtagagcacctcaagggtcctctgctgcacgttgccgatgatgccggtgcttccg 285 |||||||| || ||||| | |||| |||||||||||| ||||||||||||||| | ||| Sbjct: 1392 acgtcgtacaggacctcgaacgtccgctgctgcacgttcccgatgatgccggtggtcccg 1333 Query: 286 tcgtcgccggtgtccgtgaacgcgaggcagctgccgaatatgatcccgttggcgtcgagg 345 |||||||||||| | | ||||||||||||| ||||| | ||||||||||| | ||||||| Sbjct: 1332 tcgtcgccggtggcggcgaacgcgaggcagttgccgtacatgatcccgttcgggtcgagg 1273 Query: 346 tcgacgaccttgccgccgtcgaacaccaaagcgacggtgggtatggtgacgttgtcctgg 405 |||| | | ||||||| |||||||| |||||||| ||||||| || | | |||| Sbjct: 1272 tcgatggcggcgccgccggagaacaccagcgcgacggtcggtatggagatctgggtctgg 1213 Query: 406 ccgctgaagtcgaagcacgtgtccaggatgctcctggccggcgccgtcgggtactgcttc 465 ||| |||||||||||||||||| |||||||||||||||||||||| | ||||||||||| Sbjct: 1212 ccggcgaagtcgaagcacgtgtcgaggatgctcctggccggcgccgaccggtactgcttc 1153 Query: 466 atgccgtccttgaacgccgtcttgagcgccgtgtacgccgtgggcggcagccgcgtgatg 525 |||||| |||||||||||| | ||||||| ||||||||| |||||||||||||||||| Sbjct: 1152 atgccggccttgaacgccgacgacagcgccgagtacgccgtcggcggcagccgcgtgatg 1093 Query: 526 at 527 || Sbjct: 1092 at 1091 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 76 cttacctcgcaactagaaacaagaagacaaccacatgagagcagccta 123 ||||||||||||| | ||||||| |||| |||||||||||||| |||| Sbjct: 1555 cttacctcgcaaccacaaacaagtagacgaccacatgagagcaaccta 1508
>dbj|AK101967.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076I21, full insert sequence Length = 1736 Score = 242 bits (122), Expect = 1e-60 Identities = 257/302 (85%) Strand = Plus / Minus Query: 226 acgtcgtagagcacctcaagggtcctctgctgcacgttgccgatgatgccggtgcttccg 285 |||||||| || ||||| | |||| |||||||||||| ||||||||||||||| | ||| Sbjct: 1397 acgtcgtacaggacctcgaacgtccgctgctgcacgttcccgatgatgccggtggtcccg 1338 Query: 286 tcgtcgccggtgtccgtgaacgcgaggcagctgccgaatatgatcccgttggcgtcgagg 345 |||||||||||| | | ||||||||||||| ||||| | ||||||||||| | ||||||| Sbjct: 1337 tcgtcgccggtggcggcgaacgcgaggcagttgccgtacatgatcccgttcgggtcgagg 1278 Query: 346 tcgacgaccttgccgccgtcgaacaccaaagcgacggtgggtatggtgacgttgtcctgg 405 |||| | | ||||||| |||||||| |||||||| ||||||| || | | |||| Sbjct: 1277 tcgatggcggcgccgccggagaacaccagcgcgacggtcggtatggagatctgggtctgg 1218 Query: 406 ccgctgaagtcgaagcacgtgtccaggatgctcctggccggcgccgtcgggtactgcttc 465 ||| |||||||||||||||||| |||||||||||||||||||||| | ||||||||||| Sbjct: 1217 ccggcgaagtcgaagcacgtgtcgaggatgctcctggccggcgccgaccggtactgcttc 1158 Query: 466 atgccgtccttgaacgccgtcttgagcgccgtgtacgccgtgggcggcagccgcgtgatg 525 |||||| |||||||||||| | ||||||| ||||||||| |||||||||||||||||| Sbjct: 1157 atgccggccttgaacgccgacgacagcgccgagtacgccgtcggcggcagccgcgtgatg 1098 Query: 526 at 527 || Sbjct: 1097 at 1096 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 76 cttacctcgcaactagaaacaagaagacaaccacatgagagcagccta 123 ||||||||||||| | ||||||| |||| |||||||||||||| |||| Sbjct: 1560 cttacctcgcaaccacaaacaagtagacgaccacatgagagcaaccta 1513
>ref|NM_192718.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1413 Score = 105 bits (53), Expect = 1e-19 Identities = 218/273 (79%) Strand = Plus / Minus Query: 252 ctgctgcacgttgccgatgatgccggtgcttccgtcgtcgccggtgtccgtgaacgcgag 311 ||||||||||||||||||| ||||| | |||||||| |||| || ||||||||| Sbjct: 1347 ctgctgcacgttgccgatggtgccgaaggccttgtcgtcgcgggtgggcgcgaacgcgag 1288 Query: 312 gcagctgccgaatatgatcccgttggcgtcgaggtcgacgaccttgccgccgtcgaacac 371 ||||| |||| | | ||| |||| ||||||||||||||||| ||||||| ||||||| Sbjct: 1287 gcagccgccggacacgatgccgtgcgcgtcgaggtcgacgacggcgccgccggcgaacac 1228 Query: 372 caaagcgacggtgggtatggtgacgttgtcctggccgctgaagtcgaagcacgtgtccag 431 || |||||||| |||||| |||| |||||| ||||| |||||| |||||||||||| || Sbjct: 1227 cagcgcgacggtcggtatgctgaccttgtccaggccggtgaagttgaagcacgtgtcgag 1168 Query: 432 gatgctcctggccggcgccgtcgggtactgcttcatgccgtccttgaacgccgtcttgag 491 |||| | || | |||| ||| |||| || |||| ||| | |||||||| | || Sbjct: 1167 aatgcccaggggctccgccctcgcgtaccgcgtcatcccggctcggaacgccgacgacag 1108 Query: 492 cgccgtgtacgccgtgggcggcagccgcgtgat 524 ||||| |||||||| ||||||||||||||||| Sbjct: 1107 cgccgcgtacgccgccggcggcagccgcgtgat 1075
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 105 bits (53), Expect = 1e-19 Identities = 218/273 (79%) Strand = Plus / Minus Query: 252 ctgctgcacgttgccgatgatgccggtgcttccgtcgtcgccggtgtccgtgaacgcgag 311 ||||||||||||||||||| ||||| | |||||||| |||| || ||||||||| Sbjct: 24015986 ctgctgcacgttgccgatggtgccgaaggccttgtcgtcgcgggtgggcgcgaacgcgag 24015927 Query: 312 gcagctgccgaatatgatcccgttggcgtcgaggtcgacgaccttgccgccgtcgaacac 371 ||||| |||| | | ||| |||| ||||||||||||||||| ||||||| ||||||| Sbjct: 24015926 gcagccgccggacacgatgccgtgcgcgtcgaggtcgacgacggcgccgccggcgaacac 24015867 Query: 372 caaagcgacggtgggtatggtgacgttgtcctggccgctgaagtcgaagcacgtgtccag 431 || |||||||| |||||| |||| |||||| ||||| |||||| |||||||||||| || Sbjct: 24015866 cagcgcgacggtcggtatgctgaccttgtccaggccggtgaagttgaagcacgtgtcgag 24015807 Query: 432 gatgctcctggccggcgccgtcgggtactgcttcatgccgtccttgaacgccgtcttgag 491 |||| | || | |||| ||| |||| || |||| ||| | |||||||| | || Sbjct: 24015806 aatgcccaggggctccgccctcgcgtaccgcgtcatcccggctcggaacgccgacgacag 24015747 Query: 492 cgccgtgtacgccgtgggcggcagccgcgtgat 524 ||||| |||||||| ||||||||||||||||| Sbjct: 24015746 cgccgcgtacgccgccggcggcagccgcgtgat 24015714
>dbj|AP003216.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0090K04 Length = 152556 Score = 105 bits (53), Expect = 1e-19 Identities = 218/273 (79%) Strand = Plus / Minus Query: 252 ctgctgcacgttgccgatgatgccggtgcttccgtcgtcgccggtgtccgtgaacgcgag 311 ||||||||||||||||||| ||||| | |||||||| |||| || ||||||||| Sbjct: 130508 ctgctgcacgttgccgatggtgccgaaggccttgtcgtcgcgggtgggcgcgaacgcgag 130449 Query: 312 gcagctgccgaatatgatcccgttggcgtcgaggtcgacgaccttgccgccgtcgaacac 371 ||||| |||| | | ||| |||| ||||||||||||||||| ||||||| ||||||| Sbjct: 130448 gcagccgccggacacgatgccgtgcgcgtcgaggtcgacgacggcgccgccggcgaacac 130389 Query: 372 caaagcgacggtgggtatggtgacgttgtcctggccgctgaagtcgaagcacgtgtccag 431 || |||||||| |||||| |||| |||||| ||||| |||||| |||||||||||| || Sbjct: 130388 cagcgcgacggtcggtatgctgaccttgtccaggccggtgaagttgaagcacgtgtcgag 130329 Query: 432 gatgctcctggccggcgccgtcgggtactgcttcatgccgtccttgaacgccgtcttgag 491 |||| | || | |||| ||| |||| || |||| ||| | |||||||| | || Sbjct: 130328 aatgcccaggggctccgccctcgcgtaccgcgtcatcccggctcggaacgccgacgacag 130269 Query: 492 cgccgtgtacgccgtgggcggcagccgcgtgat 524 ||||| |||||||| ||||||||||||||||| Sbjct: 130268 cgccgcgtacgccgccggcggcagccgcgtgat 130236
>ref|XM_467512.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1428 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 490 agcgccgtgtacgccgtgggcggcagccgcgtga 523 ||||||| |||||||||||||||||||||||||| Sbjct: 1124 agcgccgagtacgccgtgggcggcagccgcgtga 1091 Score = 42.1 bits (21), Expect = 1.8 Identities = 42/49 (85%) Strand = Plus / Minus Query: 410 tgaagtcgaagcacgtgtccaggatgctcctggccggcgccgtcgggta 458 |||||||| |||| ||||||||||| | | | |||||||||| |||||| Sbjct: 1210 tgaagtcgtagcaggtgtccaggatccccgtcgccggcgccgacgggta 1162
>dbj|AK108932.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-A08, full insert sequence Length = 1066 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 490 agcgccgtgtacgccgtgggcggcagccgcgtga 523 ||||||| |||||||||||||||||||||||||| Sbjct: 215 agcgccgagtacgccgtgggcggcagccgcgtga 182 Score = 42.1 bits (21), Expect = 1.8 Identities = 42/49 (85%) Strand = Plus / Minus Query: 410 tgaagtcgaagcacgtgtccaggatgctcctggccggcgccgtcgggta 458 |||||||| |||| ||||||||||| | | | |||||||||| |||||| Sbjct: 301 tgaagtcgtagcaggtgtccaggatccccgtcgccggcgccgacgggta 253
>ref|XM_550548.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1886 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 226 acgtcgtagagcacctcaagggtcctctgctgcacgttgccgatgatgccgg 277 |||||||| | |||||| || ||| ||||||||||||||||||||| ||||| Sbjct: 1519 acgtcgtacaccacctccagcgtcttctgctgcacgttgccgatgaagccgg 1468
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 226 acgtcgtagagcacctcaagggtcctctgctgcacgttgccgatgatgccgg 277 |||||||| | |||||| || ||| ||||||||||||||||||||| ||||| Sbjct: 1062931 acgtcgtacaccacctccagcgtcttctgctgcacgttgccgatgaagccgg 1062982 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Minus Query: 226 acgtcgtagagcacctcaagggtcctctgctgcacgttgccgatgatgccg 276 ||||||||||||||||| | ||| |||||||||||| ||||||| |||| Sbjct: 1154089 acgtcgtagagcacctcgtgcgtctgctgctgcacgttcccgatgaagccg 1154039 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Minus Query: 226 acgtcgtagagcacctcaagggtcctctgctgcacgttgccgatgatgccg 276 ||||||||||||||||| | ||| |||||||||||| ||||||| |||| Sbjct: 1137543 acgtcgtagagcacctcgtgcgtctgctgctgcacgttcccgatgaagccg 1137493 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 498 gtacgccgtgggcggcagccgcgtgatga 526 ||||||||| ||||||||||||| ||||| Sbjct: 1061942 gtacgccgtcggcggcagccgcgagatga 1061970
>dbj|AP003457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0660D08 Length = 146915 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 226 acgtcgtagagcacctcaagggtcctctgctgcacgttgccgatgatgccgg 277 |||||||| | |||||| || ||| ||||||||||||||||||||| ||||| Sbjct: 39154 acgtcgtacaccacctccagcgtcttctgctgcacgttgccgatgaagccgg 39205 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Minus Query: 226 acgtcgtagagcacctcaagggtcctctgctgcacgttgccgatgatgccg 276 ||||||||||||||||| | ||| |||||||||||| ||||||| |||| Sbjct: 130312 acgtcgtagagcacctcgtgcgtctgctgctgcacgttcccgatgaagccg 130262 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Minus Query: 226 acgtcgtagagcacctcaagggtcctctgctgcacgttgccgatgatgccg 276 ||||||||||||||||| | ||| |||||||||||| ||||||| |||| Sbjct: 113766 acgtcgtagagcacctcgtgcgtctgctgctgcacgttcccgatgaagccg 113716 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 498 gtacgccgtgggcggcagccgcgtgatga 526 ||||||||| ||||||||||||| ||||| Sbjct: 38165 gtacgccgtcggcggcagccgcgagatga 38193
>dbj|AP003564.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0062J13 Length = 152837 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Plus Query: 226 acgtcgtagagcacctcaagggtcctctgctgcacgttgccgatgatgccgg 277 |||||||| | |||||| || ||| ||||||||||||||||||||| ||||| Sbjct: 125804 acgtcgtacaccacctccagcgtcttctgctgcacgttgccgatgaagccgg 125855 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 498 gtacgccgtgggcggcagccgcgtgatga 526 ||||||||| ||||||||||||| ||||| Sbjct: 124815 gtacgccgtcggcggcagccgcgagatga 124843
>dbj|AK104685.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C01, full insert sequence Length = 1886 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 226 acgtcgtagagcacctcaagggtcctctgctgcacgttgccgatgatgccgg 277 |||||||| | |||||| || ||| ||||||||||||||||||||| ||||| Sbjct: 1519 acgtcgtacaccacctccagcgtcttctgctgcacgttgccgatgaagccgg 1468
>dbj|AK066409.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067G18, full insert sequence Length = 1900 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 226 acgtcgtagagcacctcaagggtcctctgctgcacgttgccgatgatgccgg 277 |||||||| | |||||| || ||| ||||||||||||||||||||| ||||| Sbjct: 1511 acgtcgtacaccacctccagcgtcttctgctgcacgttgccgatgaagccgg 1460
>dbj|AP003456.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0542E10 Length = 146196 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Minus Query: 226 acgtcgtagagcacctcaagggtcctctgctgcacgttgccgatgatgccg 276 ||||||||||||||||| | ||| |||||||||||| ||||||| |||| Sbjct: 6042 acgtcgtagagcacctcgtgcgtctgctgctgcacgttcccgatgaagccg 5992
>dbj|AK058425.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-E01, full insert sequence Length = 1389 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Minus Query: 226 acgtcgtagagcacctcaagggtcctctgctgcacgttgccgatgatgccg 276 ||||||||||||||||| | ||| |||||||||||| ||||||| |||| Sbjct: 1302 acgtcgtagagcacctcgtgcgtctgctgctgcacgttcccgatgaagccg 1252
>ref|XM_749710.1| Aspergillus fumigatus Af293 cell wall protein (Afu3g08110) partial mRNA Length = 1848 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 272 tgccggtgcttccgtcgtcgcc 293 |||||||||||||||||||||| Sbjct: 813 tgccggtgcttccgtcgtcgcc 834
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 337 gcgtcgaggtcgacgaccttgccgc 361 ||||||||||||||||||| ||||| Sbjct: 473436 gcgtcgaggtcgacgacctcgccgc 473460
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 344 ggtcgacgaccttgccgccgt 364 ||||||||||||||||||||| Sbjct: 1854323 ggtcgacgaccttgccgccgt 1854303
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 330 cccgttggcgtcgaggtcgacgacc 354 |||||||||||||| |||||||||| Sbjct: 4424790 cccgttggcgtcgatgtcgacgacc 4424814
>emb|AL672023.7| Mouse DNA sequence from clone RP23-339O19 on chromosome X, complete sequence Length = 160615 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 agcagcctagctagccaccct 135 ||||||||||||||||||||| Sbjct: 84463 agcagcctagctagccaccct 84443
>ref|NM_185090.1| Oryza sativa (japonica cultivar-group), mRNA Length = 691 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 ttggcgtcgaggtcgacgac 353 |||||||||||||||||||| Sbjct: 359 ttggcgtcgaggtcgacgac 340
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006J12, complete sequence Length = 157069 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 tatattatggaactgaggaa 46 |||||||||||||||||||| Sbjct: 112119 tatattatggaactgaggaa 112138
>ref|XM_370399.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein (MG06896.4) partial mRNA Length = 4419 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 tgctgcacgttgccgatgat 272 |||||||||||||||||||| Sbjct: 1637 tgctgcacgttgccgatgat 1618
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 ttggcgtcgaggtcgacgac 353 |||||||||||||||||||| Sbjct: 34587795 ttggcgtcgaggtcgacgac 34587814
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 cgttgccgatgatgccggtg 279 |||||||||||||||||||| Sbjct: 1714102 cgttgccgatgatgccggtg 1714083
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 350 cgaccttgccgccgtcgaacacca 373 |||||||||||||||||| ||||| Sbjct: 2144233 cgaccttgccgccgtcgaccacca 2144256 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 gccggtgcttccgtcgtcgccggt 296 ||||||||| |||||||||||||| Sbjct: 1035581 gccggtgctgccgtcgtcgccggt 1035604
>gb|AC147407.10| Medicago truncatula clone mth2-159b14, complete sequence Length = 115857 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 agcctagctagccacccttc 137 |||||||||||||||||||| Sbjct: 85366 agcctagctagccacccttc 85347
>ref|XM_787467.1| PREDICTED: Strongylocentrotus purpuratus similar to telomeric repeat binding factor a (LOC587756), mRNA Length = 1482 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 tgattttggcccacttggtg 72 |||||||||||||||||||| Sbjct: 1063 tgattttggcccacttggtg 1044
>emb|AL355305.9| Human DNA sequence from clone RP11-487F23 on chromosome 6 Contains the 5' end of the gene for p53 regulated PA26 nuclear protein (PA26-T1), a novel gene and part of a novel gene, complete sequence Length = 185257 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 58 ttggcccacttggtgtcccttacc 81 ||||||||||||||| |||||||| Sbjct: 177619 ttggcccacttggtggcccttacc 177596
>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete sequence Length = 164236 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 ttggcgtcgaggtcgacgac 353 |||||||||||||||||||| Sbjct: 45512 ttggcgtcgaggtcgacgac 45531
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 273 gccggtgcttccgtcgtcgccggt 296 ||||||||| |||||||||||||| Sbjct: 3994431 gccggtgctgccgtcgtcgccggt 3994408
>gb|AE011718.1| Xanthomonas axonopodis pv. citri str. 306, section 96 of 469 of the complete genome Length = 12328 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 273 gccggtgcttccgtcgtcgccggt 296 ||||||||| |||||||||||||| Sbjct: 11490 gccggtgctgccgtcgtcgccggt 11513
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 cgttgccgatgatgccggtg 279 |||||||||||||||||||| Sbjct: 741089 cgttgccgatgatgccggtg 741108
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 tatattatggaactgaggaa 46 |||||||||||||||||||| Sbjct: 19511407 tatattatggaactgaggaa 19511426
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 ttggcgtcgaggtcgacgac 353 |||||||||||||||||||| Sbjct: 34677867 ttggcgtcgaggtcgacgac 34677886
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 325 atgatcccgttggcgtcgag 344 |||||||||||||||||||| Sbjct: 8108308 atgatcccgttggcgtcgag 8108289
>gb|AE004807.1| Pseudomonas aeruginosa PAO1, section 368 of 529 of the complete genome Length = 10698 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 346 tcgacgaccttgccgccgtcgaacacca 373 |||||| ||||||||||||||| ||||| Sbjct: 9245 tcgacgcccttgccgccgtcgagcacca 9218
>gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete sequence Length = 129302 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 ttggcgtcgaggtcgacgac 353 |||||||||||||||||||| Sbjct: 55538 ttggcgtcgaggtcgacgac 55519
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 tgctcctggccggcgccgtc 453 |||||||||||||||||||| Sbjct: 2586595 tgctcctggccggcgccgtc 2586576
>dbj|AK107563.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-C02, full insert sequence Length = 827 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 ttggcgtcgaggtcgacgac 353 |||||||||||||||||||| Sbjct: 369 ttggcgtcgaggtcgacgac 350
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 273 gccggtgcttccgtcgtcgccggt 296 ||||||||| |||||||||||||| Sbjct: 3996724 gccggtgctgccgtcgtcgccggt 3996701
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 260 cgttgccgatgatgccggtg 279 |||||||||||||||||||| Sbjct: 2118804 cgttgccgatgatgccggtg 2118823
>emb|CT030168.3| M.truncatula DNA sequence from clone MTH2-16A18 on chromosome 3, complete sequence Length = 125291 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 agcctagctagccacccttc 137 |||||||||||||||||||| Sbjct: 109803 agcctagctagccacccttc 109822 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,353,504 Number of Sequences: 3902068 Number of extensions: 3353504 Number of successful extensions: 62574 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61322 Number of HSP's gapped (non-prelim): 1244 length of query: 530 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 507 effective length of database: 17,143,297,704 effective search space: 8691651935928 effective search space used: 8691651935928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
