ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd20o03 |
|---|---|
| Clone Library Name | barley_pub |
>S6A17_RAT (P31662) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT4 (Solute carrier family 6 member 17) Length = 727 Score = 32.0 bits (71), Expect = 1.2 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = -3 Query: 267 TGLFFSSIGEELAHFPSPPALQSQFWLWLVTWHLGLFIALTFG 139 TGL F + E + HFP+ P F+L L+ LG I G Sbjct: 438 TGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGSMIGTMAG 480
>S6A17_MOUSE (Q8BJI1) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT4 (Solute carrier family 6 member 17) Length = 727 Score = 32.0 bits (71), Expect = 1.2 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = -3 Query: 267 TGLFFSSIGEELAHFPSPPALQSQFWLWLVTWHLGLFIALTFG 139 TGL F + E + HFP+ P F+L L+ LG I G Sbjct: 438 TGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGSMIGTMAG 480
>S6A17_HUMAN (Q9H1V8) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT4 (Solute carrier family 6 member 17) Length = 727 Score = 32.0 bits (71), Expect = 1.2 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = -3 Query: 267 TGLFFSSIGEELAHFPSPPALQSQFWLWLVTWHLGLFIALTFG 139 TGL F + E + HFP+ P F+L L+ LG I G Sbjct: 438 TGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGSMIGTMAG 480
>S6A15_BOVIN (Q9XS59) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT73 (Orphan transporter v7-3) (Solute carrier family 6 member 15) Length = 729 Score = 30.8 bits (68), Expect = 2.6 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -3 Query: 267 TGLFFSSIGEELAHFPSPPALQSQFWLWLVTWHLG 163 TGL F + E + HFP+ P F+L LV LG Sbjct: 439 TGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLG 473
>S6A15_HUMAN (Q9H2J7) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT73 (Orphan transporter v7-3) (Solute carrier family 6 member 15) Length = 730 Score = 30.8 bits (68), Expect = 2.6 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = -3 Query: 267 TGLFFSSIGEELAHFPSPPALQSQFWLWLVTWHLG 163 TGL F + E + HFP+ P F+L LV LG Sbjct: 439 TGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLG 473
>S6A15_RAT (Q08469) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT73 (Orphan transporter v7-3) (Solute carrier family 6 member 15) Length = 729 Score = 30.4 bits (67), Expect = 3.4 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -3 Query: 267 TGLFFSSIGEELAHFPSPPALQSQFWLWLVTWHLG 163 TGL F + E + HFP+ P F+L L+ LG Sbjct: 439 TGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLG 473
>S6A15_MOUSE (Q8BG16) Orphan sodium- and chloride-dependent neurotransmitter| transporter NTT73 (Orphan transporter v7-3) (Solute carrier family 6 member 15) Length = 729 Score = 30.4 bits (67), Expect = 3.4 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -3 Query: 267 TGLFFSSIGEELAHFPSPPALQSQFWLWLVTWHLG 163 TGL F + E + HFP+ P F+L L+ LG Sbjct: 439 TGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLG 473
>CHIF_DROME (Q9NK54) Protein chiffon| Length = 1711 Score = 30.0 bits (66), Expect = 4.5 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = +1 Query: 85 VNPLLLEVVLGPALEPDLAEGERDEQTQVPRHQPQPELRLESR 213 VN L E + L+ D+ E +E+ Q PR +P P LR +S+ Sbjct: 356 VNRFLEEEPVESELDMDVDESLSNEELQSPRQRPSPALREKSK 398
>MYCN_MARMO (Q61976) N-myc proto-oncogene protein (N-myc1)| Length = 460 Score = 30.0 bits (66), Expect = 4.5 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 4/87 (4%) Frame = -2 Query: 367 PTGLAAEGPEXXXXXXXXXAGAVEHPADQRQQLDGALLLQ---HRRGARPLPLAP-GSPV 200 P G G + HPA + +D A++ ++R P+P+AP GSP Sbjct: 156 PAGRGHGGTAGAGRAGAALPAELAHPA--AECVDPAVVFPFPVNKRDPAPVPVAPAGSPA 213 Query: 199 AVLAVVGDVAPGSVHRAHLRPDRVQGQ 119 AV G AP S A P R+ G+ Sbjct: 214 VGAAVAGAAAPASA--AVAAPPRLGGR 238
>CASB_RABIT (P09116) Beta-casein precursor| Length = 228 Score = 30.0 bits (66), Expect = 4.5 Identities = 13/42 (30%), Positives = 28/42 (66%) Frame = +1 Query: 76 QKLVNPLLLEVVLGPALEPDLAEGERDEQTQVPRHQPQPELR 201 Q ++N L+++L P L+P++ E + ++T +P+H+ P L+ Sbjct: 85 QNILNLAQLDMLL-PLLQPEIMEDPKAKETIIPKHKLMPFLK 125
>RBFAL_MOUSE (Q6P3B9) Putative ribosome-binding factor A, mitochondrial| precursor Length = 350 Score = 29.6 bits (65), Expect = 5.9 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +1 Query: 85 VNPLLLEVVLGPALEPDLAEGERDEQTQVPRHQPQP 192 V+ LL E GP E D +G R+ QVP P+P Sbjct: 195 VDRLLAEADFGPPDERDDLDGLRNADAQVPHDSPEP 230
>VG50_ICHV1 (Q00130) Hypothetical gene 50 protein| Length = 670 Score = 29.3 bits (64), Expect = 7.7 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = -2 Query: 238 GARPLPLAPGSPVAVLAVVGDVAPGSVH 155 G RP P PG P + V PGSVH Sbjct: 97 GTRPRPTIPGVPTTIPNTDAPVDPGSVH 124
>HCN3_HUMAN (Q9P1Z3) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 3 Length = 774 Score = 29.3 bits (64), Expect = 7.7 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = -2 Query: 262 ALLLQHRRGARPLPLAPGSPVAVLA 188 A+ L H+RG PLPL+P SP +LA Sbjct: 621 AIALTHQRG--PLPLSPDSPATLLA 643
>HCN3_MOUSE (O88705) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 3 (Hyperpolarization-activated cation channel 3) (HAC-3) Length = 779 Score = 29.3 bits (64), Expect = 7.7 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = -2 Query: 262 ALLLQHRRGARPLPLAPGSPVAVLA 188 A+ L H+RG PLPL+P SP +LA Sbjct: 620 AIALTHQRG--PLPLSPDSPATLLA 642
>HCN3_RAT (Q9JKA8) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 3 Length = 780 Score = 29.3 bits (64), Expect = 7.7 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = -2 Query: 262 ALLLQHRRGARPLPLAPGSPVAVLA 188 A+ L H+RG PLPL+P SP +LA Sbjct: 621 AIALTHQRG--PLPLSPDSPATLLA 643
>BCHH_CHLVI (O50314) Magnesium-chelatase subunit H (EC 6.6.1.1)| (Mg-protoporphyrin IX chelatase subunit H) Length = 1279 Score = 29.3 bits (64), Expect = 7.7 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%) Frame = -3 Query: 363 RDWLRRD-----LNVIGFGLIGWLAPSSIPLINGNSLTGLFFSSIGEELAHFPSPPALQS 199 RDWL ++ +N++GFGL+G A S+ P G + G ++ + + P L Sbjct: 288 RDWLMKEKIDLLVNMMGFGLVGGPAGSTKP---GTAADARHEILTGLDVPYMVAQPLLVQ 344 Query: 198 QFWLW 184 F W Sbjct: 345 DFESW 349
>RYR1_HUMAN (P21817) Ryanodine receptor 1 (Skeletal muscle-type ryanodine| receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release channel) Length = 5038 Score = 28.9 bits (63), Expect = 10.0 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +1 Query: 118 PALEPDLAEGERDEQTQVPRHQPQP 192 P LEP+ A+ E E+ +VP P+P Sbjct: 4497 PELEPEKADAENGEKEEVPEPTPEP 4521
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 28.9 bits (63), Expect = 10.0 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 5/68 (7%) Frame = -2 Query: 289 ADQRQQLDGALLLQHRRGARPLPLA--PG---SPVAVLAVVGDVAPGSVHRAHLRPDRVQ 125 A Q Q L G H GA P+ A PG +PV + A VG PGS+ A + +V Sbjct: 228 APQAQSLGG----MHVNGAPPMMQASMPGGVPAPVQMAAAVGGPGPGSLAPAGVMQAQVG 283 Query: 124 GQDRGLLP 101 Q G +P Sbjct: 284 MQGAGPVP 291 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,252,485 Number of Sequences: 219361 Number of extensions: 1257658 Number of successful extensions: 4319 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4222 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4319 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
