ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21d01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 149 bits (75), Expect = 5e-33 Identities = 198/241 (82%) Strand = Plus / Plus Query: 12 ttcctttggtcttaaccaactccaagcatgtaacataaccaaggtcaccacgcacatgaa 71 |||||||||||||||||| ||||||||||| || ||||||||||||||| ||||||||| Sbjct: 31601751 ttcctttggtcttaaccacttccaagcatgtgacgtaaccaaggtcaccatgcacatgaa 31601810 Query: 72 cctctatgtncttaagctcaatgtttanagggaactcataatccgngttgcaaaccatct 131 |||||| | || || |||||||||| |||||||||||||| | | || ||||||| Sbjct: 31601811 cctctacatttttcagatcaatgtttagtgggaactcataatctgcgccacataccatct 31601870 Query: 132 nccagctttgcaagaccacatcgtaaccggatatccgacctgccccaggatggacaacat 191 ||||||||||| |||||| || ||||| ||||||||||| || ||||||||| ||||| Sbjct: 31601871 cccagctttgcatgaccacgtcataacctgatatccgacccgcagcaggatggataacat 31601930 Query: 192 acacatagtctactttagcccagatagagntcattgnagtaaaatctccattcttgaaag 251 | |||| ||| | |||||||| | |||| ||| | | || ||| ||||||||||||| Sbjct: 31601931 atacatggtcacccttagcccataaagagtacatcgctgcaagatcgccattcttgaaag 31601990 Query: 252 c 252 | Sbjct: 31601991 c 31601991
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0503C12 Length = 147180 Score = 149 bits (75), Expect = 5e-33 Identities = 198/241 (82%) Strand = Plus / Plus Query: 12 ttcctttggtcttaaccaactccaagcatgtaacataaccaaggtcaccacgcacatgaa 71 |||||||||||||||||| ||||||||||| || ||||||||||||||| ||||||||| Sbjct: 15483 ttcctttggtcttaaccacttccaagcatgtgacgtaaccaaggtcaccatgcacatgaa 15542 Query: 72 cctctatgtncttaagctcaatgtttanagggaactcataatccgngttgcaaaccatct 131 |||||| | || || |||||||||| |||||||||||||| | | || ||||||| Sbjct: 15543 cctctacatttttcagatcaatgtttagtgggaactcataatctgcgccacataccatct 15602 Query: 132 nccagctttgcaagaccacatcgtaaccggatatccgacctgccccaggatggacaacat 191 ||||||||||| |||||| || ||||| ||||||||||| || ||||||||| ||||| Sbjct: 15603 cccagctttgcatgaccacgtcataacctgatatccgacccgcagcaggatggataacat 15662 Query: 192 acacatagtctactttagcccagatagagntcattgnagtaaaatctccattcttgaaag 251 | |||| ||| | |||||||| | |||| ||| | | || ||| ||||||||||||| Sbjct: 15663 atacatggtcacccttagcccataaagagtacatcgctgcaagatcgccattcttgaaag 15722 Query: 252 c 252 | Sbjct: 15723 c 15723
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0435B05 Length = 150997 Score = 149 bits (75), Expect = 5e-33 Identities = 198/241 (82%) Strand = Plus / Plus Query: 12 ttcctttggtcttaaccaactccaagcatgtaacataaccaaggtcaccacgcacatgaa 71 |||||||||||||||||| ||||||||||| || ||||||||||||||| ||||||||| Sbjct: 114774 ttcctttggtcttaaccacttccaagcatgtgacgtaaccaaggtcaccatgcacatgaa 114833 Query: 72 cctctatgtncttaagctcaatgtttanagggaactcataatccgngttgcaaaccatct 131 |||||| | || || |||||||||| |||||||||||||| | | || ||||||| Sbjct: 114834 cctctacatttttcagatcaatgtttagtgggaactcataatctgcgccacataccatct 114893 Query: 132 nccagctttgcaagaccacatcgtaaccggatatccgacctgccccaggatggacaacat 191 ||||||||||| |||||| || ||||| ||||||||||| || ||||||||| ||||| Sbjct: 114894 cccagctttgcatgaccacgtcataacctgatatccgacccgcagcaggatggataacat 114953 Query: 192 acacatagtctactttagcccagatagagntcattgnagtaaaatctccattcttgaaag 251 | |||| ||| | |||||||| | |||| ||| | | || ||| ||||||||||||| Sbjct: 114954 atacatggtcacccttagcccataaagagtacatcgctgcaagatcgccattcttgaaag 115013 Query: 252 c 252 | Sbjct: 115014 c 115014
>dbj|AK099571.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035E10, full insert sequence Length = 1066 Score = 149 bits (75), Expect = 5e-33 Identities = 198/241 (82%) Strand = Plus / Minus Query: 12 ttcctttggtcttaaccaactccaagcatgtaacataaccaaggtcaccacgcacatgaa 71 |||||||||||||||||| ||||||||||| || ||||||||||||||| ||||||||| Sbjct: 680 ttcctttggtcttaaccacttccaagcatgtgacgtaaccaaggtcaccatgcacatgaa 621 Query: 72 cctctatgtncttaagctcaatgtttanagggaactcataatccgngttgcaaaccatct 131 |||||| | || || |||||||||| |||||||||||||| | | || ||||||| Sbjct: 620 cctctacatttttcagatcaatgtttagtgggaactcataatctgcgccacataccatct 561 Query: 132 nccagctttgcaagaccacatcgtaaccggatatccgacctgccccaggatggacaacat 191 ||||||||||| |||||| || ||||| ||||||||||| || ||||||||| ||||| Sbjct: 560 cccagctttgcatgaccacgtcataacctgatatccgacccgcagcaggatggataacat 501 Query: 192 acacatagtctactttagcccagatagagntcattgnagtaaaatctccattcttgaaag 251 | |||| ||| | |||||||| | |||| ||| | | || ||| ||||||||||||| Sbjct: 500 atacatggtcacccttagcccataaagagtacatcgctgcaagatcgccattcttgaaag 441 Query: 252 c 252 | Sbjct: 440 c 440
>ref|XM_507540.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0054K20.23 mRNA Length = 984 Score = 71.9 bits (36), Expect = 9e-10 Identities = 146/184 (79%) Strand = Plus / Minus Query: 14 cctttggtcttaaccaactccaagcatgtaacataaccaaggtcaccacgcacatgaacc 73 |||||||||||||||| ||||| ||| || ||||| ||||| ||||| | |||||| ||| Sbjct: 644 cctttggtcttaaccagctccaggcaggtcacatacccaagatcacctctcacatggacc 585 Query: 74 tctatgtncttaagctcaatgtttanagggaactcataatccgngttgcaaaccatctnc 133 || | | || || ||||| | | ||||||||| || |||| || ||| ||||||| | Sbjct: 584 tcaacatcctgcagatcaatctggagagggaactcgtagtccgcgtcgcacaccatctcc 525 Query: 134 cagctttgcaagaccacatcgtaaccggatatccgacctgccccaggatggacaacatac 193 ||||| |||| |||| ||||| || |||||||| |||||| |||||| ||||| ||| Sbjct: 524 cagctctgcatcaccatgtcgtagcccgatatccggcctgccgaaggatgaacaacgtac 465 Query: 194 acat 197 |||| Sbjct: 464 acat 461
>ref|XM_468183.1| Oryza sativa (japonica cultivar-group), mRNA Length = 972 Score = 71.9 bits (36), Expect = 9e-10 Identities = 146/184 (79%) Strand = Plus / Minus Query: 14 cctttggtcttaaccaactccaagcatgtaacataaccaaggtcaccacgcacatgaacc 73 |||||||||||||||| ||||| ||| || ||||| ||||| ||||| | |||||| ||| Sbjct: 623 cctttggtcttaaccagctccaggcaggtcacatacccaagatcacctctcacatggacc 564 Query: 74 tctatgtncttaagctcaatgtttanagggaactcataatccgngttgcaaaccatctnc 133 || | | || || ||||| | | ||||||||| || |||| || ||| ||||||| | Sbjct: 563 tcaacatcctgcagatcaatctggagagggaactcgtagtccgcgtcgcacaccatctcc 504 Query: 134 cagctttgcaagaccacatcgtaaccggatatccgacctgccccaggatggacaacatac 193 ||||| |||| |||| ||||| || |||||||| |||||| |||||| ||||| ||| Sbjct: 503 cagctctgcatcaccatgtcgtagcccgatatccggcctgccgaaggatgaacaacgtac 444 Query: 194 acat 197 |||| Sbjct: 443 acat 440
>ref|XM_507017.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0054K20.23 mRNA Length = 1044 Score = 71.9 bits (36), Expect = 9e-10 Identities = 146/184 (79%) Strand = Plus / Minus Query: 14 cctttggtcttaaccaactccaagcatgtaacataaccaaggtcaccacgcacatgaacc 73 |||||||||||||||| ||||| ||| || ||||| ||||| ||||| | |||||| ||| Sbjct: 637 cctttggtcttaaccagctccaggcaggtcacatacccaagatcacctctcacatggacc 578 Query: 74 tctatgtncttaagctcaatgtttanagggaactcataatccgngttgcaaaccatctnc 133 || | | || || ||||| | | ||||||||| || |||| || ||| ||||||| | Sbjct: 577 tcaacatcctgcagatcaatctggagagggaactcgtagtccgcgtcgcacaccatctcc 518 Query: 134 cagctttgcaagaccacatcgtaaccggatatccgacctgccccaggatggacaacatac 193 ||||| |||| |||| ||||| || |||||||| |||||| |||||| ||||| ||| Sbjct: 517 cagctctgcatcaccatgtcgtagcccgatatccggcctgccgaaggatgaacaacgtac 458 Query: 194 acat 197 |||| Sbjct: 457 acat 454
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 71.9 bits (36), Expect = 9e-10 Identities = 146/184 (79%) Strand = Plus / Plus Query: 14 cctttggtcttaaccaactccaagcatgtaacataaccaaggtcaccacgcacatgaacc 73 |||||||||||||||| ||||| ||| || ||||| ||||| ||||| | |||||| ||| Sbjct: 33514901 cctttggtcttaaccagctccaggcaggtcacatacccaagatcacctctcacatggacc 33514960 Query: 74 tctatgtncttaagctcaatgtttanagggaactcataatccgngttgcaaaccatctnc 133 || | | || || ||||| | | ||||||||| || |||| || ||| ||||||| | Sbjct: 33514961 tcaacatcctgcagatcaatctggagagggaactcgtagtccgcgtcgcacaccatctcc 33515020 Query: 134 cagctttgcaagaccacatcgtaaccggatatccgacctgccccaggatggacaacatac 193 ||||| |||| |||| ||||| || |||||||| |||||| |||||| ||||| ||| Sbjct: 33515021 cagctctgcatcaccatgtcgtagcccgatatccggcctgccgaaggatgaacaacgtac 33515080 Query: 194 acat 197 |||| Sbjct: 33515081 acat 33515084
>dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0054K20 Length = 153584 Score = 71.9 bits (36), Expect = 9e-10 Identities = 146/184 (79%) Strand = Plus / Plus Query: 14 cctttggtcttaaccaactccaagcatgtaacataaccaaggtcaccacgcacatgaacc 73 |||||||||||||||| ||||| ||| || ||||| ||||| ||||| | |||||| ||| Sbjct: 89776 cctttggtcttaaccagctccaggcaggtcacatacccaagatcacctctcacatggacc 89835 Query: 74 tctatgtncttaagctcaatgtttanagggaactcataatccgngttgcaaaccatctnc 133 || | | || || ||||| | | ||||||||| || |||| || ||| ||||||| | Sbjct: 89836 tcaacatcctgcagatcaatctggagagggaactcgtagtccgcgtcgcacaccatctcc 89895 Query: 134 cagctttgcaagaccacatcgtaaccggatatccgacctgccccaggatggacaacatac 193 ||||| |||| |||| ||||| || |||||||| |||||| |||||| ||||| ||| Sbjct: 89896 cagctctgcatcaccatgtcgtagcccgatatccggcctgccgaaggatgaacaacgtac 89955 Query: 194 acat 197 |||| Sbjct: 89956 acat 89959
>dbj|AK104526.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H04, full insert sequence Length = 972 Score = 71.9 bits (36), Expect = 9e-10 Identities = 146/184 (79%) Strand = Plus / Minus Query: 14 cctttggtcttaaccaactccaagcatgtaacataaccaaggtcaccacgcacatgaacc 73 |||||||||||||||| ||||| ||| || ||||| ||||| ||||| | |||||| ||| Sbjct: 623 cctttggtcttaaccagctccaggcaggtcacatacccaagatcacctctcacatggacc 564 Query: 74 tctatgtncttaagctcaatgtttanagggaactcataatccgngttgcaaaccatctnc 133 || | | || || ||||| | | ||||||||| || |||| || ||| ||||||| | Sbjct: 563 tcaacatcctgcagatcaatctggagagggaactcgtagtccgcgtcgcacaccatctcc 504 Query: 134 cagctttgcaagaccacatcgtaaccggatatccgacctgccccaggatggacaacatac 193 ||||| |||| |||| ||||| || |||||||| |||||| |||||| ||||| ||| Sbjct: 503 cagctctgcatcaccatgtcgtagcccgatatccggcctgccgaaggatgaacaacgtac 444 Query: 194 acat 197 |||| Sbjct: 443 acat 440
>dbj|AK104117.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-A04, full insert sequence Length = 984 Score = 71.9 bits (36), Expect = 9e-10 Identities = 146/184 (79%) Strand = Plus / Minus Query: 14 cctttggtcttaaccaactccaagcatgtaacataaccaaggtcaccacgcacatgaacc 73 |||||||||||||||| ||||| ||| || ||||| ||||| ||||| | |||||| ||| Sbjct: 644 cctttggtcttaaccagctccaggcaggtcacatacccaagatcacctctcacatggacc 585 Query: 74 tctatgtncttaagctcaatgtttanagggaactcataatccgngttgcaaaccatctnc 133 || | | || || ||||| | | ||||||||| || |||| || ||| ||||||| | Sbjct: 584 tcaacatcctgcagatcaatctggagagggaactcgtagtccgcgtcgcacaccatctcc 525 Query: 134 cagctttgcaagaccacatcgtaaccggatatccgacctgccccaggatggacaacatac 193 ||||| |||| |||| ||||| || |||||||| |||||| |||||| ||||| ||| Sbjct: 524 cagctctgcatcaccatgtcgtagcccgatatccggcctgccgaaggatgaacaacgtac 465 Query: 194 acat 197 |||| Sbjct: 464 acat 461
>dbj|AK061452.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-F07, full insert sequence Length = 1044 Score = 71.9 bits (36), Expect = 9e-10 Identities = 146/184 (79%) Strand = Plus / Minus Query: 14 cctttggtcttaaccaactccaagcatgtaacataaccaaggtcaccacgcacatgaacc 73 |||||||||||||||| ||||| ||| || ||||| ||||| ||||| | |||||| ||| Sbjct: 637 cctttggtcttaaccagctccaggcaggtcacatacccaagatcacctctcacatggacc 578 Query: 74 tctatgtncttaagctcaatgtttanagggaactcataatccgngttgcaaaccatctnc 133 || | | || || ||||| | | ||||||||| || |||| || ||| ||||||| | Sbjct: 577 tcaacatcctgcagatcaatctggagagggaactcgtagtccgcgtcgcacaccatctcc 518 Query: 134 cagctttgcaagaccacatcgtaaccggatatccgacctgccccaggatggacaacatac 193 ||||| |||| |||| ||||| || |||||||| |||||| |||||| ||||| ||| Sbjct: 517 cagctctgcatcaccatgtcgtagcccgatatccggcctgccgaaggatgaacaacgtac 458 Query: 194 acat 197 |||| Sbjct: 457 acat 454
>ref|NM_191261.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1134 Score = 65.9 bits (33), Expect = 6e-08 Identities = 102/126 (80%) Strand = Plus / Minus Query: 127 catctnccagctttgcaagaccacatcgtaaccggatatccgacctgccccaggatggac 186 ||||| ||||||||||| |||||| || ||||| ||||||||||| || ||||||||| Sbjct: 498 catctcccagctttgcatgaccacgtcataacctgatatccgacccgcagcaggatggat 439 Query: 187 aacatacacatagtctactttagcccagatagagntcattgnagtaaaatctccattctt 246 |||||| |||| ||| | |||||||| | |||| ||| | | || ||| |||||||| Sbjct: 438 aacatatacatggtcacccttagcccataaagagtacatcgctgcaagatcgccattctt 379 Query: 247 gaaagc 252 |||||| Sbjct: 378 gaaagc 373
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence Length = 1438950 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ccaagattttcctttggtct 23 |||||||||||||||||||| Sbjct: 1089899 ccaagattttcctttggtct 1089918
>ref|XM_571336.1| Cryptococcus neoformans var. neoformans JEC21 phosphatidylinositol 3-kinase TOR1 (CNF03740) partial mRNA Length = 7168 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ccaagattttcctttggtct 23 |||||||||||||||||||| Sbjct: 6262 ccaagattttcctttggtct 6243
>gb|AF098973.1|AF098973 Filobasidiella neoformans var. neoformans phosphatidylinositol 3-kinase TOR1 (TOR1) mRNA, partial cds Length = 3249 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ccaagattttcctttggtct 23 |||||||||||||||||||| Sbjct: 2431 ccaagattttcctttggtct 2412
>gb|AF098972.1|AF098972 Cryptococcus neoformans var. grubii phosphatidylinositol 3-kinase TOR1 (TOR1) gene, complete cds Length = 9364 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ccaagattttcctttggtct 23 |||||||||||||||||||| Sbjct: 7970 ccaagattttcctttggtct 7951 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,585,528 Number of Sequences: 3902068 Number of extensions: 1585528 Number of successful extensions: 22569 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 22526 Number of HSP's gapped (non-prelim): 30 length of query: 254 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 232 effective length of database: 17,147,199,772 effective search space: 3978150347104 effective search space used: 3978150347104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
