ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21c22 |
|---|---|
| Clone Library Name | barley_pub |
>SNIP1_HUMAN (Q8TAD8) Smad nuclear-interacting protein 1| Length = 396 Score = 93.2 bits (230), Expect = 7e-19 Identities = 54/121 (44%), Positives = 70/121 (57%), Gaps = 2/121 (1%) Frame = -2 Query: 700 RWRLYVFKGGEALK*TVVCSSHEPLPFWKGKENCRYPHRPI--PPAASNMQFFNTDL*RR 527 RWRLY FK E L V H + G+ R PI P + F L Sbjct: 258 RWRLYPFKNDEVLP---VMYIHRQSAYLLGRHR-RIADIPIDHPSCSKQHAVFQYRLVEY 313 Query: 526 SNQNGMMSKQVRPYLMDLGSTNGTFINENRVESLRYYELFERDNIKFGNSSREYVLLHEN 347 + +G + ++V+PY++DLGS NGTF+N R+E RYYEL E+D +KFG SSREYVLLHE+ Sbjct: 314 TRADGTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVLKFGFSSREYVLLHES 373 Query: 346 S 344 S Sbjct: 374 S 374
>SNIP1_MOUSE (Q8BIZ6) Smad nuclear-interacting protein 1| Length = 383 Score = 93.2 bits (230), Expect = 7e-19 Identities = 54/121 (44%), Positives = 70/121 (57%), Gaps = 2/121 (1%) Frame = -2 Query: 700 RWRLYVFKGGEALK*TVVCSSHEPLPFWKGKENCRYPHRPI--PPAASNMQFFNTDL*RR 527 RWRLY FK E L V H + G+ R PI P + F L Sbjct: 245 RWRLYPFKNDEVLP---VMYIHRQSAYLLGRHR-RIADIPIDHPSCSKQHAVFQYRLVEY 300 Query: 526 SNQNGMMSKQVRPYLMDLGSTNGTFINENRVESLRYYELFERDNIKFGNSSREYVLLHEN 347 + +G + ++V+PY++DLGS NGTF+N R+E RYYEL E+D +KFG SSREYVLLHE+ Sbjct: 301 TRADGTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVLKFGFSSREYVLLHES 360 Query: 346 S 344 S Sbjct: 361 S 361
>NADAP_HUMAN (Q9BWU0) Kanadaptin (Kidney anion exchanger adapter protein)| (Solute carrier family 4 anion exchanger member 1 adapter protein) (Lung cancer oncogene 3 protein) Length = 796 Score = 41.6 bits (96), Expect(2) = 3e-05 Identities = 18/43 (41%), Positives = 28/43 (65%) Frame = -2 Query: 487 YLMDLGSTNGTFINENRVESLRYYELFERDNIKFGNSSREYVL 359 YL DLGST+GTF+N+ R+ Y + ++FG S+R ++L Sbjct: 232 YLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVVRFGGSTRLFIL 274 Score = 25.8 bits (55), Expect(2) = 3e-05 Identities = 10/14 (71%), Positives = 12/14 (85%) Frame = -1 Query: 581 HPSCSKQHAVLQYR 540 HPS S+ HAVLQ+R Sbjct: 203 HPSVSRYHAVLQHR 216
>PP1R8_MOUSE (Q8R3G1) Nuclear inhibitor of protein phosphatase 1 (NIPP-1)| (Protein phosphatase 1 regulatory inhibitor subunit 8) Length = 351 Score = 36.2 bits (82), Expect(3) = 0.001 Identities = 18/51 (35%), Positives = 29/51 (56%) Frame = -2 Query: 493 RPYLMDLGSTNGTFINENRVESLRYYELFERDNIKFGNSSREYVLLHENST 341 R +L+DL ST+GTF+ R+E + ++ + FG S+R Y L + T Sbjct: 82 RVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKPQT 132 Score = 22.3 bits (46), Expect(3) = 0.001 Identities = 9/25 (36%), Positives = 12/25 (48%) Frame = -3 Query: 657 EPLYVHRMSHYLFGRERRIADIPTD 583 E L + +YLFGR + D D Sbjct: 39 EKLIIDEKKYYLFGRNPDLCDFTID 63 Score = 21.9 bits (45), Expect(3) = 0.001 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = -1 Query: 581 HPSCSKQHAVLQY 543 H SCS+ HA L Y Sbjct: 64 HQSCSRVHAALVY 76
>PP1R8_HUMAN (Q12972) Nuclear inhibitor of protein phosphatase 1 (NIPP-1)| (Protein phosphatase 1 regulatory inhibitor subunit 8) [Includes: Activator of RNA decay (EC 3.1.4.-) (ARD-1)] Length = 351 Score = 36.2 bits (82), Expect(3) = 0.001 Identities = 18/51 (35%), Positives = 29/51 (56%) Frame = -2 Query: 493 RPYLMDLGSTNGTFINENRVESLRYYELFERDNIKFGNSSREYVLLHENST 341 R +L+DL ST+GTF+ R+E + ++ + FG S+R Y L + T Sbjct: 82 RVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKPQT 132 Score = 22.3 bits (46), Expect(3) = 0.001 Identities = 9/25 (36%), Positives = 12/25 (48%) Frame = -3 Query: 657 EPLYVHRMSHYLFGRERRIADIPTD 583 E L + +YLFGR + D D Sbjct: 39 EKLIIDEKKYYLFGRNPDLCDFTID 63 Score = 21.9 bits (45), Expect(3) = 0.001 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = -1 Query: 581 HPSCSKQHAVLQY 543 H SCS+ HA L Y Sbjct: 64 HQSCSRVHAALVY 76
>PP1R8_BOVIN (Q28147) Nuclear inhibitor of protein phosphatase 1 (NIPP-1)| (Protein phosphatase 1, regulatory inhibitor subunit 8) Length = 351 Score = 36.2 bits (82), Expect(3) = 0.001 Identities = 18/51 (35%), Positives = 29/51 (56%) Frame = -2 Query: 493 RPYLMDLGSTNGTFINENRVESLRYYELFERDNIKFGNSSREYVLLHENST 341 R +L+DL ST+GTF+ R+E + ++ + FG S+R Y L + T Sbjct: 82 RVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKPQT 132 Score = 22.3 bits (46), Expect(3) = 0.001 Identities = 9/25 (36%), Positives = 12/25 (48%) Frame = -3 Query: 657 EPLYVHRMSHYLFGRERRIADIPTD 583 E L + +YLFGR + D D Sbjct: 39 EKLIIDEKKYYLFGRNPDLCDFTID 63 Score = 21.9 bits (45), Expect(3) = 0.001 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = -1 Query: 581 HPSCSKQHAVLQY 543 H SCS+ HA L Y Sbjct: 64 HQSCSRVHAALVY 76
>YNVD_SCHPO (O74388) Protein C3H7.13 in chromosome II| Length = 301 Score = 35.8 bits (81), Expect = 0.13 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Frame = -2 Query: 598 RYPHRPIPPAASNMQFFNTDL*RRSNQNGMMSKQ-VRPYLMDLGSTNGTFINENRV 434 R+ ++ P+ SN+ FFN+ + R + + K + Y+ D+ S+NGTF+NE R+ Sbjct: 31 RHTNKSTSPSPSNL-FFNSKVLSRQHAELWLDKDTLSVYIRDVKSSNGTFVNETRL 85
>RNF8_HUMAN (O76064) Ubiquitin ligase protein RNF8 (EC 6.3.2.-) (RING finger| protein 8) Length = 485 Score = 33.1 bits (74), Expect = 0.87 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 7/53 (13%) Frame = -2 Query: 484 LMDLGSTNGTFINENRVESLRYYELFERDNIKFG-------NSSREYVLLHEN 347 +MD S NG ++N R+E LR Y + + D I+ G N+ EY + E+ Sbjct: 76 IMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVTEED 128
>YBI1_YEAST (P38180) Hypothetical 40.8 kDa protein in RHK1-PET112 intergenic| region Length = 368 Score = 33.1 bits (74), Expect = 0.87 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 10/131 (7%) Frame = +1 Query: 1 SITSVP----DLNRDDKIQHLG-ECNHHK--ADYTLSRSVSRQASKQTKNPDIT---KSM 150 SI S P + NR + + ++ + HH+ A+ L++ +Q + T NP +T K Sbjct: 89 SIPSAPYGAYNQNRANDVPYMNTQKKHHRFSANNNLNQQKYKQYPQYTSNPMVTAHLKQT 148 Query: 151 YVCMYVATS*RKLHSVTKRIHLARNHDRHNKNNNSSSVHQLSLAAQKQSSDDALHICLPP 330 Y +Y ++ H N+ +N NNN++S + +L Q Q S + P Sbjct: 149 YPQLY--------YNSNVNAHNNNNNSNNNNNNNNNSNNNNNLYNQTQFSTRYFNSNSSP 200 Query: 331 PFSLSSSHGAT 363 + S+S+ ++ Sbjct: 201 SLTSSTSNSSS 211
>PML1_YEAST (Q07930) Pre-mRNA leakage protein 1| Length = 204 Score = 30.4 bits (67), Expect(2) = 1.1 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 10/41 (24%) Frame = -2 Query: 487 YLMDLGSTNGTFINENRVESLRYYEL----------FERDN 395 Y+MDL S+NGT +N + RY EL FE DN Sbjct: 155 YVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTLSEFEEDN 195 Score = 21.2 bits (43), Expect(2) = 1.1 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = -1 Query: 626 TFLEGKGELQISPQTHP--SCSKQHAVLQYRLV 534 T L+ + E+ ++ P + SKQH V+Q+R V Sbjct: 116 TDLDDRTEIVVADIGIPEETSSKQHCVIQFRNV 148
>YKI5_CAEEL (P46012) Hypothetical protein C01G6.5| Length = 952 Score = 32.3 bits (72), Expect = 1.5 Identities = 19/51 (37%), Positives = 29/51 (56%) Frame = -2 Query: 526 SNQNGMMSKQVRPYLMDLGSTNGTFINENRVESLRYYELFERDNIKFGNSS 374 +NQ+G V YL++ S NGT+IN+ R+ + L D IKFG+ + Sbjct: 75 TNQDG-----VEEYLVEDISENGTYINDRRLSKDKREILKSGDTIKFGHKN 120
>C4BP_HUMAN (P04003) C4b-binding protein alpha chain precursor (C4bp)| (Proline-rich protein) (PRP) Length = 597 Score = 32.3 bits (72), Expect = 1.5 Identities = 33/101 (32%), Positives = 40/101 (39%), Gaps = 11/101 (10%) Frame = +1 Query: 367 TPGYYCQT*CCPFRRVRSSGGTQHDSH**KSR------WYYQDPSDKASLALTSCHSGCS 528 TP C+ CCP ++ + TQH KSR ++Y D SCH Sbjct: 355 TPYQGCEALCCPEPKLNNGEITQHR----KSRPANHCVYFYGDEIS------FSCHETSR 404 Query: 529 FSTSLY*RTACCLLQEGW-----VCGDICNSPFPSKKVVAH 636 FS A C W CGDICN FP K +AH Sbjct: 405 FS-------AICQGDGTWSPRTPSCGDICN--FPPK--IAH 434
>ASB11_PONPY (Q5RFS1) Ankyrin repeat and SOCS box protein 11 (ASB-11)| Length = 323 Score = 31.6 bits (70), Expect = 2.5 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +1 Query: 208 IHLARNHDRHNKNNNSSSVHQLSLAAQKQSSDDALHICLPPP 333 IHL ++ + K N+ L LAA K S + AL +C PP Sbjct: 244 IHLLTDYGANLKRRNAQGKSALDLAAPKSSVEQALLLCEGPP 285
>FRAH_ANASP (P46017) Protein fraH| Length = 289 Score = 30.8 bits (68), Expect = 4.3 Identities = 20/70 (28%), Positives = 33/70 (47%) Frame = -2 Query: 592 PHRPIPPAASNMQFFNTDL*RRSNQNGMMSKQVRPYLMDLGSTNGTFINENRVESLRYYE 413 P+ IPP F N+++ R + + + Y+ D+GS+NGT+IN + + Sbjct: 209 PNDRIPPDVDVSGFANSEIVSRVHADIRLEGDAH-YIEDVGSSNGTYINNLPLLPGNRHR 267 Query: 412 LFERDNIKFG 383 L D I G Sbjct: 268 LRPGDRISLG 277
>DPOL_HBVW2 (P03159) P protein [Includes: DNA-directed DNA polymerase (EC| 2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)] Length = 845 Score = 30.4 bits (67), Expect = 5.7 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 15/74 (20%) Frame = +1 Query: 184 KLHSVTKRIH----LARNHDRHNKNNNSSSVHQ----------LSLAAQKQSSDDALHI- 318 K H T+R H H+ NN+SS +HQ LS + ++ SS A+ Sbjct: 248 KAHPSTRRYFGVEPSGSGHIDHSVNNSSSCLHQSAVRKAAYSHLSTSKRQSSSGHAVEFH 307 Query: 319 CLPPPFSLSSSHGA 360 CLPP + S S G+ Sbjct: 308 CLPPNSAGSQSQGS 321
>Y4449_ARATH (O23305) FHA domain-containing protein At4g14490| Length = 386 Score = 30.4 bits (67), Expect = 5.7 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = -2 Query: 484 LMDLGSTNGTFINENRVESLRYYELFERDNIKFG 383 + DLGS+NGT +N N ++ L + D IK G Sbjct: 62 IQDLGSSNGTLLNSNALDPETSVNLGDGDVIKLG 95
>PI3K2_DICDI (P54674) Phosphatidylinositol 3-kinase 2 (EC 2.7.1.137)| (PI3-kinase) (PtdIns-3-kinase) (PI3K) Length = 1858 Score = 30.4 bits (67), Expect = 5.7 Identities = 16/44 (36%), Positives = 26/44 (59%) Frame = -3 Query: 477 ILVVPTGLSSMRIVLSPSATTNSSKGTTLSLAIVAGSTCCSMRT 346 I VP +SS ++++ PS+ +SS TLSL+ + S+ S T Sbjct: 340 ISAVPKKVSSSKLLIPPSSNVSSSSNITLSLSSSSPSSSSSSST 383
>GLI3_PANTR (Q5IS56) Zinc finger protein GLI3| Length = 1580 Score = 30.0 bits (66), Expect = 7.4 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 4/114 (3%) Frame = +1 Query: 46 HLGE----CNHHKADYTLSRSVSRQASKQTKNPDITKSMYVCMYVATS*RKLHSVTKRIH 213 H GE C H + S + R +K + YVC K+ TKR Sbjct: 570 HTGEKPYVCEHEGCNKAFSNASDR--AKHQNRTHSNEKPYVC--------KIPGCTKRYT 619 Query: 214 LARNHDRHNKNNNSSSVHQLSLAAQKQSSDDALHICLPPPFSLSSSHGATRTPG 375 + +H K + H +KQ D +H PPP S SH +R+PG Sbjct: 620 DPSSLRKHVKTVHGPEAH----VTKKQRGD--IHPRPPPPRD-SGSHSQSRSPG 666
>GLI3_HUMAN (P10071) Zinc finger protein GLI3| Length = 1580 Score = 30.0 bits (66), Expect = 7.4 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 4/114 (3%) Frame = +1 Query: 46 HLGE----CNHHKADYTLSRSVSRQASKQTKNPDITKSMYVCMYVATS*RKLHSVTKRIH 213 H GE C H + S + R +K + YVC K+ TKR Sbjct: 570 HTGEKPYVCEHEGCNKAFSNASDR--AKHQNRTHSNEKPYVC--------KIPGCTKRYT 619 Query: 214 LARNHDRHNKNNNSSSVHQLSLAAQKQSSDDALHICLPPPFSLSSSHGATRTPG 375 + +H K + H +KQ D +H PPP S SH +R+PG Sbjct: 620 DPSSLRKHVKTVHGPEAH----VTKKQRGD--IHPRPPPPRD-SGSHSQSRSPG 666
>GLI3_MOUSE (Q61602) Zinc finger protein GLI3| Length = 1596 Score = 30.0 bits (66), Expect = 7.4 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 4/114 (3%) Frame = +1 Query: 46 HLGE----CNHHKADYTLSRSVSRQASKQTKNPDITKSMYVCMYVATS*RKLHSVTKRIH 213 H GE C H + S + R +K + YVC K+ TKR Sbjct: 570 HTGEKPYVCEHEGCNKAFSNASDR--AKHQNRTHSNEKPYVC--------KIPGCTKRYT 619 Query: 214 LARNHDRHNKNNNSSSVHQLSLAAQKQSSDDALHICLPPPFSLSSSHGATRTPG 375 + +H K + H +KQ D +H PPP S SH +R+PG Sbjct: 620 DPSSLRKHVKTVHGPEAH----VTKKQRGD--MHPRPPPPRD-SGSHSQSRSPG 666
>DUN1_YEAST (P39009) DNA damage response protein kinase DUN1 (EC 2.7.11.1)| Length = 513 Score = 29.6 bits (65), Expect = 9.7 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Frame = -2 Query: 469 STNGTFINENRVESLRYYELFERDNIKFGNS-SREYVLLHENSTD*TEEGGRCGARRRSF 293 S NGTFIN NR+ + Y L D I FG S S + +STD + + + RS+ Sbjct: 101 SRNGTFINGNRLVK-KDYILKNGDRIVFGKSCSFLFKYASSSSTDIENDDEKVSSESRSY 159
>PEPT_OCEIH (Q8CXN0) Peptidase T (EC 3.4.11.4) (Tripeptide aminopeptidase)| (Aminotripeptidase) (Tripeptidase) Length = 409 Score = 29.6 bits (65), Expect = 9.7 Identities = 11/40 (27%), Positives = 23/40 (57%) Frame = +1 Query: 199 TKRIHLARNHDRHNKNNNSSSVHQLSLAAQKQSSDDALHI 318 TK ++ R+HDR+ N ++ Q + Q + ++A+H+ Sbjct: 275 TKVYYIIRDHDRNKFENRKDTLRQFATDIQHKYGENAIHV 314 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 104,640,085 Number of Sequences: 219361 Number of extensions: 2223771 Number of successful extensions: 5740 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 5460 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5718 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7309604013 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
