ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd21c22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SNIP1_HUMAN (Q8TAD8) Smad nuclear-interacting protein 1 93 7e-19
2SNIP1_MOUSE (Q8BIZ6) Smad nuclear-interacting protein 1 93 7e-19
3NADAP_HUMAN (Q9BWU0) Kanadaptin (Kidney anion exchanger adapter ... 42 3e-05
4PP1R8_MOUSE (Q8R3G1) Nuclear inhibitor of protein phosphatase 1 ... 36 0.001
5PP1R8_HUMAN (Q12972) Nuclear inhibitor of protein phosphatase 1 ... 36 0.001
6PP1R8_BOVIN (Q28147) Nuclear inhibitor of protein phosphatase 1 ... 36 0.001
7YNVD_SCHPO (O74388) Protein C3H7.13 in chromosome II 36 0.13
8RNF8_HUMAN (O76064) Ubiquitin ligase protein RNF8 (EC 6.3.2.-) (... 33 0.87
9YBI1_YEAST (P38180) Hypothetical 40.8 kDa protein in RHK1-PET112... 33 0.87
10PML1_YEAST (Q07930) Pre-mRNA leakage protein 1 30 1.1
11YKI5_CAEEL (P46012) Hypothetical protein C01G6.5 32 1.5
12C4BP_HUMAN (P04003) C4b-binding protein alpha chain precursor (C... 32 1.5
13ASB11_PONPY (Q5RFS1) Ankyrin repeat and SOCS box protein 11 (ASB... 32 2.5
14FRAH_ANASP (P46017) Protein fraH 31 4.3
15DPOL_HBVW2 (P03159) P protein [Includes: DNA-directed DNA polyme... 30 5.7
16Y4449_ARATH (O23305) FHA domain-containing protein At4g14490 30 5.7
17PI3K2_DICDI (P54674) Phosphatidylinositol 3-kinase 2 (EC 2.7.1.1... 30 5.7
18GLI3_PANTR (Q5IS56) Zinc finger protein GLI3 30 7.4
19GLI3_HUMAN (P10071) Zinc finger protein GLI3 30 7.4
20GLI3_MOUSE (Q61602) Zinc finger protein GLI3 30 7.4
21DUN1_YEAST (P39009) DNA damage response protein kinase DUN1 (EC ... 30 9.7
22PEPT_OCEIH (Q8CXN0) Peptidase T (EC 3.4.11.4) (Tripeptide aminop... 30 9.7

>SNIP1_HUMAN (Q8TAD8) Smad nuclear-interacting protein 1|
          Length = 396

 Score = 93.2 bits (230), Expect = 7e-19
 Identities = 54/121 (44%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
 Frame = -2

Query: 700 RWRLYVFKGGEALK*TVVCSSHEPLPFWKGKENCRYPHRPI--PPAASNMQFFNTDL*RR 527
           RWRLY FK  E L    V   H    +  G+   R    PI  P  +     F   L   
Sbjct: 258 RWRLYPFKNDEVLP---VMYIHRQSAYLLGRHR-RIADIPIDHPSCSKQHAVFQYRLVEY 313

Query: 526 SNQNGMMSKQVRPYLMDLGSTNGTFINENRVESLRYYELFERDNIKFGNSSREYVLLHEN 347
           +  +G + ++V+PY++DLGS NGTF+N  R+E  RYYEL E+D +KFG SSREYVLLHE+
Sbjct: 314 TRADGTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVLKFGFSSREYVLLHES 373

Query: 346 S 344
           S
Sbjct: 374 S 374



to top

>SNIP1_MOUSE (Q8BIZ6) Smad nuclear-interacting protein 1|
          Length = 383

 Score = 93.2 bits (230), Expect = 7e-19
 Identities = 54/121 (44%), Positives = 70/121 (57%), Gaps = 2/121 (1%)
 Frame = -2

Query: 700 RWRLYVFKGGEALK*TVVCSSHEPLPFWKGKENCRYPHRPI--PPAASNMQFFNTDL*RR 527
           RWRLY FK  E L    V   H    +  G+   R    PI  P  +     F   L   
Sbjct: 245 RWRLYPFKNDEVLP---VMYIHRQSAYLLGRHR-RIADIPIDHPSCSKQHAVFQYRLVEY 300

Query: 526 SNQNGMMSKQVRPYLMDLGSTNGTFINENRVESLRYYELFERDNIKFGNSSREYVLLHEN 347
           +  +G + ++V+PY++DLGS NGTF+N  R+E  RYYEL E+D +KFG SSREYVLLHE+
Sbjct: 301 TRADGTVGRRVKPYIIDLGSGNGTFLNNKRIEPQRYYELKEKDVLKFGFSSREYVLLHES 360

Query: 346 S 344
           S
Sbjct: 361 S 361



to top

>NADAP_HUMAN (Q9BWU0) Kanadaptin (Kidney anion exchanger adapter protein)|
           (Solute carrier family 4 anion exchanger member 1
           adapter protein) (Lung cancer oncogene 3 protein)
          Length = 796

 Score = 41.6 bits (96), Expect(2) = 3e-05
 Identities = 18/43 (41%), Positives = 28/43 (65%)
 Frame = -2

Query: 487 YLMDLGSTNGTFINENRVESLRYYELFERDNIKFGNSSREYVL 359
           YL DLGST+GTF+N+ R+    Y  +     ++FG S+R ++L
Sbjct: 232 YLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVVRFGGSTRLFIL 274



 Score = 25.8 bits (55), Expect(2) = 3e-05
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 581 HPSCSKQHAVLQYR 540
           HPS S+ HAVLQ+R
Sbjct: 203 HPSVSRYHAVLQHR 216



to top

>PP1R8_MOUSE (Q8R3G1) Nuclear inhibitor of protein phosphatase 1 (NIPP-1)|
           (Protein phosphatase 1 regulatory inhibitor subunit 8)
          Length = 351

 Score = 36.2 bits (82), Expect(3) = 0.001
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = -2

Query: 493 RPYLMDLGSTNGTFINENRVESLRYYELFERDNIKFGNSSREYVLLHENST 341
           R +L+DL ST+GTF+   R+E  +  ++     + FG S+R Y L  +  T
Sbjct: 82  RVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKPQT 132



 Score = 22.3 bits (46), Expect(3) = 0.001
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 657 EPLYVHRMSHYLFGRERRIADIPTD 583
           E L +    +YLFGR   + D   D
Sbjct: 39  EKLIIDEKKYYLFGRNPDLCDFTID 63



 Score = 21.9 bits (45), Expect(3) = 0.001
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 581 HPSCSKQHAVLQY 543
           H SCS+ HA L Y
Sbjct: 64  HQSCSRVHAALVY 76



to top

>PP1R8_HUMAN (Q12972) Nuclear inhibitor of protein phosphatase 1 (NIPP-1)|
           (Protein phosphatase 1 regulatory inhibitor subunit 8)
           [Includes: Activator of RNA decay (EC 3.1.4.-) (ARD-1)]
          Length = 351

 Score = 36.2 bits (82), Expect(3) = 0.001
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = -2

Query: 493 RPYLMDLGSTNGTFINENRVESLRYYELFERDNIKFGNSSREYVLLHENST 341
           R +L+DL ST+GTF+   R+E  +  ++     + FG S+R Y L  +  T
Sbjct: 82  RVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKPQT 132



 Score = 22.3 bits (46), Expect(3) = 0.001
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 657 EPLYVHRMSHYLFGRERRIADIPTD 583
           E L +    +YLFGR   + D   D
Sbjct: 39  EKLIIDEKKYYLFGRNPDLCDFTID 63



 Score = 21.9 bits (45), Expect(3) = 0.001
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 581 HPSCSKQHAVLQY 543
           H SCS+ HA L Y
Sbjct: 64  HQSCSRVHAALVY 76



to top

>PP1R8_BOVIN (Q28147) Nuclear inhibitor of protein phosphatase 1 (NIPP-1)|
           (Protein phosphatase 1, regulatory inhibitor subunit 8)
          Length = 351

 Score = 36.2 bits (82), Expect(3) = 0.001
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = -2

Query: 493 RPYLMDLGSTNGTFINENRVESLRYYELFERDNIKFGNSSREYVLLHENST 341
           R +L+DL ST+GTF+   R+E  +  ++     + FG S+R Y L  +  T
Sbjct: 82  RVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKPQT 132



 Score = 22.3 bits (46), Expect(3) = 0.001
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 657 EPLYVHRMSHYLFGRERRIADIPTD 583
           E L +    +YLFGR   + D   D
Sbjct: 39  EKLIIDEKKYYLFGRNPDLCDFTID 63



 Score = 21.9 bits (45), Expect(3) = 0.001
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 581 HPSCSKQHAVLQY 543
           H SCS+ HA L Y
Sbjct: 64  HQSCSRVHAALVY 76



to top

>YNVD_SCHPO (O74388) Protein C3H7.13 in chromosome II|
          Length = 301

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = -2

Query: 598 RYPHRPIPPAASNMQFFNTDL*RRSNQNGMMSKQ-VRPYLMDLGSTNGTFINENRV 434
           R+ ++   P+ SN+ FFN+ +  R +    + K  +  Y+ D+ S+NGTF+NE R+
Sbjct: 31  RHTNKSTSPSPSNL-FFNSKVLSRQHAELWLDKDTLSVYIRDVKSSNGTFVNETRL 85



to top

>RNF8_HUMAN (O76064) Ubiquitin ligase protein RNF8 (EC 6.3.2.-) (RING finger|
           protein 8)
          Length = 485

 Score = 33.1 bits (74), Expect = 0.87
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
 Frame = -2

Query: 484 LMDLGSTNGTFINENRVESLRYYELFERDNIKFG-------NSSREYVLLHEN 347
           +MD  S NG ++N  R+E LR Y + + D I+ G       N+  EY +  E+
Sbjct: 76  IMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVTEED 128



to top

>YBI1_YEAST (P38180) Hypothetical 40.8 kDa protein in RHK1-PET112 intergenic|
           region
          Length = 368

 Score = 33.1 bits (74), Expect = 0.87
 Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 10/131 (7%)
 Frame = +1

Query: 1   SITSVP----DLNRDDKIQHLG-ECNHHK--ADYTLSRSVSRQASKQTKNPDIT---KSM 150
           SI S P    + NR + + ++  +  HH+  A+  L++   +Q  + T NP +T   K  
Sbjct: 89  SIPSAPYGAYNQNRANDVPYMNTQKKHHRFSANNNLNQQKYKQYPQYTSNPMVTAHLKQT 148

Query: 151 YVCMYVATS*RKLHSVTKRIHLARNHDRHNKNNNSSSVHQLSLAAQKQSSDDALHICLPP 330
           Y  +Y        ++     H   N+  +N NNN++S +  +L  Q Q S    +    P
Sbjct: 149 YPQLY--------YNSNVNAHNNNNNSNNNNNNNNNSNNNNNLYNQTQFSTRYFNSNSSP 200

Query: 331 PFSLSSSHGAT 363
             + S+S+ ++
Sbjct: 201 SLTSSTSNSSS 211



to top

>PML1_YEAST (Q07930) Pre-mRNA leakage protein 1|
          Length = 204

 Score = 30.4 bits (67), Expect(2) = 1.1
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 10/41 (24%)
 Frame = -2

Query: 487 YLMDLGSTNGTFINENRVESLRYYEL----------FERDN 395
           Y+MDL S+NGT +N   +   RY EL          FE DN
Sbjct: 155 YVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTLSEFEEDN 195



 Score = 21.2 bits (43), Expect(2) = 1.1
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -1

Query: 626 TFLEGKGELQISPQTHP--SCSKQHAVLQYRLV 534
           T L+ + E+ ++    P  + SKQH V+Q+R V
Sbjct: 116 TDLDDRTEIVVADIGIPEETSSKQHCVIQFRNV 148



to top

>YKI5_CAEEL (P46012) Hypothetical protein C01G6.5|
          Length = 952

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = -2

Query: 526 SNQNGMMSKQVRPYLMDLGSTNGTFINENRVESLRYYELFERDNIKFGNSS 374
           +NQ+G     V  YL++  S NGT+IN+ R+   +   L   D IKFG+ +
Sbjct: 75  TNQDG-----VEEYLVEDISENGTYINDRRLSKDKREILKSGDTIKFGHKN 120



to top

>C4BP_HUMAN (P04003) C4b-binding protein alpha chain precursor (C4bp)|
           (Proline-rich protein) (PRP)
          Length = 597

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 33/101 (32%), Positives = 40/101 (39%), Gaps = 11/101 (10%)
 Frame = +1

Query: 367 TPGYYCQT*CCPFRRVRSSGGTQHDSH**KSR------WYYQDPSDKASLALTSCHSGCS 528
           TP   C+  CCP  ++ +   TQH     KSR      ++Y D          SCH    
Sbjct: 355 TPYQGCEALCCPEPKLNNGEITQHR----KSRPANHCVYFYGDEIS------FSCHETSR 404

Query: 529 FSTSLY*RTACCLLQEGW-----VCGDICNSPFPSKKVVAH 636
           FS       A C     W      CGDICN  FP K  +AH
Sbjct: 405 FS-------AICQGDGTWSPRTPSCGDICN--FPPK--IAH 434



to top

>ASB11_PONPY (Q5RFS1) Ankyrin repeat and SOCS box protein 11 (ASB-11)|
          Length = 323

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 208 IHLARNHDRHNKNNNSSSVHQLSLAAQKQSSDDALHICLPPP 333
           IHL  ++  + K  N+     L LAA K S + AL +C  PP
Sbjct: 244 IHLLTDYGANLKRRNAQGKSALDLAAPKSSVEQALLLCEGPP 285



to top

>FRAH_ANASP (P46017) Protein fraH|
          Length = 289

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = -2

Query: 592 PHRPIPPAASNMQFFNTDL*RRSNQNGMMSKQVRPYLMDLGSTNGTFINENRVESLRYYE 413
           P+  IPP      F N+++  R + +  +      Y+ D+GS+NGT+IN   +     + 
Sbjct: 209 PNDRIPPDVDVSGFANSEIVSRVHADIRLEGDAH-YIEDVGSSNGTYINNLPLLPGNRHR 267

Query: 412 LFERDNIKFG 383
           L   D I  G
Sbjct: 268 LRPGDRISLG 277



to top

>DPOL_HBVW2 (P03159) P protein [Includes: DNA-directed DNA polymerase (EC|
           2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49);
           Ribonuclease H (EC 3.1.26.4)]
          Length = 845

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
 Frame = +1

Query: 184 KLHSVTKRIH----LARNHDRHNKNNNSSSVHQ----------LSLAAQKQSSDDALHI- 318
           K H  T+R          H  H+ NN+SS +HQ          LS + ++ SS  A+   
Sbjct: 248 KAHPSTRRYFGVEPSGSGHIDHSVNNSSSCLHQSAVRKAAYSHLSTSKRQSSSGHAVEFH 307

Query: 319 CLPPPFSLSSSHGA 360
           CLPP  + S S G+
Sbjct: 308 CLPPNSAGSQSQGS 321



to top

>Y4449_ARATH (O23305) FHA domain-containing protein At4g14490|
          Length = 386

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 484 LMDLGSTNGTFINENRVESLRYYELFERDNIKFG 383
           + DLGS+NGT +N N ++      L + D IK G
Sbjct: 62  IQDLGSSNGTLLNSNALDPETSVNLGDGDVIKLG 95



to top

>PI3K2_DICDI (P54674) Phosphatidylinositol 3-kinase 2 (EC 2.7.1.137)|
           (PI3-kinase) (PtdIns-3-kinase) (PI3K)
          Length = 1858

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -3

Query: 477 ILVVPTGLSSMRIVLSPSATTNSSKGTTLSLAIVAGSTCCSMRT 346
           I  VP  +SS ++++ PS+  +SS   TLSL+  + S+  S  T
Sbjct: 340 ISAVPKKVSSSKLLIPPSSNVSSSSNITLSLSSSSPSSSSSSST 383



to top

>GLI3_PANTR (Q5IS56) Zinc finger protein GLI3|
          Length = 1580

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 4/114 (3%)
 Frame = +1

Query: 46  HLGE----CNHHKADYTLSRSVSRQASKQTKNPDITKSMYVCMYVATS*RKLHSVTKRIH 213
           H GE    C H   +   S +  R  +K        +  YVC        K+   TKR  
Sbjct: 570 HTGEKPYVCEHEGCNKAFSNASDR--AKHQNRTHSNEKPYVC--------KIPGCTKRYT 619

Query: 214 LARNHDRHNKNNNSSSVHQLSLAAQKQSSDDALHICLPPPFSLSSSHGATRTPG 375
              +  +H K  +    H      +KQ  D  +H   PPP   S SH  +R+PG
Sbjct: 620 DPSSLRKHVKTVHGPEAH----VTKKQRGD--IHPRPPPPRD-SGSHSQSRSPG 666



to top

>GLI3_HUMAN (P10071) Zinc finger protein GLI3|
          Length = 1580

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 4/114 (3%)
 Frame = +1

Query: 46  HLGE----CNHHKADYTLSRSVSRQASKQTKNPDITKSMYVCMYVATS*RKLHSVTKRIH 213
           H GE    C H   +   S +  R  +K        +  YVC        K+   TKR  
Sbjct: 570 HTGEKPYVCEHEGCNKAFSNASDR--AKHQNRTHSNEKPYVC--------KIPGCTKRYT 619

Query: 214 LARNHDRHNKNNNSSSVHQLSLAAQKQSSDDALHICLPPPFSLSSSHGATRTPG 375
              +  +H K  +    H      +KQ  D  +H   PPP   S SH  +R+PG
Sbjct: 620 DPSSLRKHVKTVHGPEAH----VTKKQRGD--IHPRPPPPRD-SGSHSQSRSPG 666



to top

>GLI3_MOUSE (Q61602) Zinc finger protein GLI3|
          Length = 1596

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 31/114 (27%), Positives = 43/114 (37%), Gaps = 4/114 (3%)
 Frame = +1

Query: 46  HLGE----CNHHKADYTLSRSVSRQASKQTKNPDITKSMYVCMYVATS*RKLHSVTKRIH 213
           H GE    C H   +   S +  R  +K        +  YVC        K+   TKR  
Sbjct: 570 HTGEKPYVCEHEGCNKAFSNASDR--AKHQNRTHSNEKPYVC--------KIPGCTKRYT 619

Query: 214 LARNHDRHNKNNNSSSVHQLSLAAQKQSSDDALHICLPPPFSLSSSHGATRTPG 375
              +  +H K  +    H      +KQ  D  +H   PPP   S SH  +R+PG
Sbjct: 620 DPSSLRKHVKTVHGPEAH----VTKKQRGD--MHPRPPPPRD-SGSHSQSRSPG 666



to top

>DUN1_YEAST (P39009) DNA damage response protein kinase DUN1 (EC 2.7.11.1)|
          Length = 513

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -2

Query: 469 STNGTFINENRVESLRYYELFERDNIKFGNS-SREYVLLHENSTD*TEEGGRCGARRRSF 293
           S NGTFIN NR+   + Y L   D I FG S S  +     +STD   +  +  +  RS+
Sbjct: 101 SRNGTFINGNRLVK-KDYILKNGDRIVFGKSCSFLFKYASSSSTDIENDDEKVSSESRSY 159



to top

>PEPT_OCEIH (Q8CXN0) Peptidase T (EC 3.4.11.4) (Tripeptide aminopeptidase)|
           (Aminotripeptidase) (Tripeptidase)
          Length = 409

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 199 TKRIHLARNHDRHNKNNNSSSVHQLSLAAQKQSSDDALHI 318
           TK  ++ R+HDR+   N   ++ Q +   Q +  ++A+H+
Sbjct: 275 TKVYYIIRDHDRNKFENRKDTLRQFATDIQHKYGENAIHV 314


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,640,085
Number of Sequences: 219361
Number of extensions: 2223771
Number of successful extensions: 5740
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 5460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5718
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7309604013
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top