ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20n19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYDP_PHOLL (P60155) Protein syd 30 2.1
2TULP2_MOUSE (P46686) Tubby-related protein 2 (Tubby-like protein... 28 4.8

>SYDP_PHOLL (P60155) Protein syd|
          Length = 184

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 216 IXXLLVNETRCWXK*WQXEEGGRXXESQVLGRPSPXV 106
           +   L N TRC+   WQ E G      ++ G PSP +
Sbjct: 5   VTEALSNFTRCYVDLWQKETGAPPASRELYGVPSPCI 41



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>TULP2_MOUSE (P46686) Tubby-related protein 2 (Tubby-like protein 2) (P4-6|
           protein) (Fragment)
          Length = 564

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 247 QSFXICXSSFDXXIACE 197
           Q+F IC SSFD  +ACE
Sbjct: 548 QAFAICLSSFDGKLACE 564


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,409,909
Number of Sequences: 219361
Number of extensions: 295355
Number of successful extensions: 376
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 80,573,946
effective HSP length: 59
effective length of database: 67,631,647
effective search space used: 1623159528
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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