>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                            
Query: 185      caccttgtttcattcacaagcaatnttgntatcaaaactgcttanacatattgnaaatga 244
                |||||| | ||||||||| || || ||| ||||||||||||| | ||| |||| ||||||
Sbjct: 13140215 caccttatctcattcacaggctattttggtatcaaaactgctcagacagattgcaaatga 13140274

                         
Query: 245      ttgaaatgc 253
                |||||||||
Sbjct: 13140275 ttgaaatgc 13140283

>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07,
             from chromosome 3, complete sequence
          Length = 151173

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 59/69 (85%)
 Strand = Plus / Minus

                                                                         
Query: 185   caccttgtttcattcacaagcaatnttgntatcaaaactgcttanacatattgnaaatga 244
             |||||| | ||||||||| || || ||| ||||||||||||| | ||| |||| ||||||
Sbjct: 86423 caccttatctcattcacaggctattttggtatcaaaactgctcagacagattgcaaatga 86364

                      
Query: 245   ttgaaatgc 253
             |||||||||
Sbjct: 86363 ttgaaatgc 86355

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                            
Query: 185      caccttgtttcattcacaagcaatnttgntatcaaaactgcttanacatattgnaaatga 244
                |||||| | ||||||||| || || ||| ||||||||||||| | ||| |||| ||||||
Sbjct: 13136990 caccttatctcattcacaggctattttggtatcaaaactgctcagacagattgcaaatga 13137049

                         
Query: 245      ttgaaatgc 253
                |||||||||
Sbjct: 13137050 ttgaaatgc 13137058

>dbj|AK102370.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091L01, full
           insert sequence
          Length = 2102

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 59/69 (85%)
 Strand = Plus / Minus

                                                                       
Query: 185 caccttgtttcattcacaagcaatnttgntatcaaaactgcttanacatattgnaaatga 244
           |||||| | ||||||||| || || ||| ||||||||||||| | ||| |||| ||||||
Sbjct: 903 caccttatctcattcacaggctattttggtatcaaaactgctcagacagattgcaaatga 844

                    
Query: 245 ttgaaatgc 253
           |||||||||
Sbjct: 843 ttgaaatgc 835

>emb|AJ234583.1|HVU234583 Hordeum vulgare genomic DNA fragment; clone MWG0838.uni
          Length = 263

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 1   gttatactaagcttgaaacatttattttgaggcggagcgagta 43
           |||||||||||||||| ||| |||||||||| ||||| |||||
Sbjct: 214 gttatactaagcttgagacaattattttgagacggagggagta 256

>emb|AM260505.1| Platanus acerifolia partial mRNA for tubby protein (tub gene)
          Length = 941

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 194 tcattcacaagcaatnttgntatcaaaactgct 226
           ||||||||||||||| ||| ||||||| |||||
Sbjct: 671 tcattcacaagcaatcttggtatcaaagctgct 639

>gb|AC136905.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0064E13, complete sequence
          Length = 150158

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 189   ttgtttcattcacaagcaatnttg 212
             |||||||||||||||||||| |||
Sbjct: 66506 ttgtttcattcacaagcaatattg 66483

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 189      ttgtttcattcacaagcaatnttg 212
                |||||||||||||||||||| |||
Sbjct: 20055371 ttgtttcattcacaagcaatattg 20055348

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 189      ttgtttcattcacaagcaatnttg 212
                |||||||||||||||||||| |||
Sbjct: 20342247 ttgtttcattcacaagcaatattg 20342224

>emb|X83518.1|HVKNOX3 H.vulgare Knox3 gene
          Length = 10815

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                    
Query: 5    tactaagcttgaaacatttattttgaggcggagcgagtat 44
            |||||||||||| ||| ||||||||||  |||| ||||||
Sbjct: 7259 tactaagcttgagacagttattttgagatggagggagtat 7298

>gb|DQ267106.1| Triticum urartu clone BAC 210J24 chromosome 4A, complete sequence
          Length = 111912

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 19    catttattttgaggcggagcgagtatta 46
             ||||||||||||  ||||||||||||||
Sbjct: 75854 catttattttgaaacggagcgagtatta 75881

>gb|AC079462.2|AC079462 Homo sapiens X PAC GS1-554N22 (Roswell Park Cancer Institute Human PAC
             Library) complete sequence
          Length = 77050

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   ccttgtttcattcacaagca 206
             ||||||||||||||||||||
Sbjct: 62155 ccttgtttcattcacaagca 62174

>gb|AC171014.3| Gallus gallus BAC clone CH261-89A18 from chromosome ul, complete
             sequence
          Length = 181265

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    ttacatagagagatagctat 85
             ||||||||||||||||||||
Sbjct: 32989 ttacatagagagatagctat 32970

>gb|U40455.1|HSU40455 Human chromosome X cosmid, clones 196B12, 9H11 and 43H9, repeat units
             and sequence tagged sites
          Length = 106000

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   ccttgtttcattcacaagca 206
             ||||||||||||||||||||
Sbjct: 60176 ccttgtttcattcacaagca 60195


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,959,391
Number of Sequences: 3902068
Number of extensions: 1959391
Number of successful extensions: 44588
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44524
Number of HSP's gapped (non-prelim): 64
length of query: 253
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 231
effective length of database: 17,147,199,772
effective search space: 3961003147332
effective search space used: 3961003147332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)