Clone Information

BLAST Search Result

Clone Name	rbasd21c18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SRX_DROME (Q9VX10) Putative sulfiredoxin (EC 1.8.98.2)	59	1e-08
2	SRXN1_MOUSE (Q9D975) Sulfiredoxin-1 (EC 1.8.98.2) (Neoplastic pr...	57	2e-08
3	SRXN1_HUMAN (Q9BYN0) Sulfiredoxin-1 (EC 1.8.98.2)	57	3e-08
4	SRX1_YEAST (P36077) Sulfiredoxin (EC 1.8.98.2) (Sulphiredoxin)	47	3e-05
5	PARB2_DEIRA (Q9RZE7) Probable chromosome 2 partitioning protein ...	40	0.003
6	PARB_PSEPU (P0A152) Probable chromosome partitioning protein parB	40	0.003
7	PARB_PSEPK (P0A151) Probable chromosome partitioning protein parB	40	0.003
8	SRX1_SCHPO (Q9URV9) Putative sulfiredoxin (EC 1.8.98.2)	40	0.004
9	PARB_CHLPN (Q9Z7M0) Probable chromosome partitioning protein parB	35	0.10
10	HNF3B_RAT (P32182) Hepatocyte nuclear factor 3-beta (HNF-3B) (Fo...	34	0.29
11	HNF3B_MOUSE (P35583) Hepatocyte nuclear factor 3-beta (HNF-3B) (...	34	0.29
12	HNF3B_HUMAN (Q9Y261) Hepatocyte nuclear factor 3-beta (HNF-3B) (...	33	0.50
13	PARB_NEIMB (Q9JXP5) Probable chromosome partitioning protein parB	32	0.86
14	PARB_NEIMA (Q9JW77) Probable chromosome partitioning protein parB	32	0.86
15	SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1...	31	2.5
16	MAP1_SCHPO (P78926) Pheromone receptor transcription activator (...	31	2.5
17	CYB_OKAJO (Q6YLN1) Cytochrome b	31	2.5
18	CYB_HEMJE (O78783) Cytochrome b	31	2.5
19	CYB_ALCLI (O99257) Cytochrome b	31	2.5
20	SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1...	31	2.5
21	CYB_CAPSI (O78784) Cytochrome b	31	2.5
22	TNPA_BACTU (P10021) Transposase for transposon Tn4430	31	2.5
23	SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1	31	2.5
24	CYB_THRSW (Q9B6F0) Cytochrome b	30	3.3
25	VGLG_HHV2H (P13290) Glycoprotein G	30	3.3
26	SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1	30	4.3
27	RF1_BDEBA (Q6MRK9) Peptide chain release factor 1 (RF-1)	30	4.3
28	CYB_RHIUN (Q96071) Cytochrome b	30	5.6
29	RL10_SYNEL (Q8DM26) 50S ribosomal protein L10	30	5.6
30	PARB_XYLFA (Q9PB63) Probable chromosome partitioning protein parB	30	5.6
31	CYB_TRANA (P24965) Cytochrome b	29	7.3
32	CYB_SYLOB (Q6ELV9) Cytochrome b	29	7.3
33	CYB_SYLFL (O47415) Cytochrome b	29	7.3
34	CYB_SYLAU (Q6ELW2) Cytochrome b	29	7.3
35	CYB_SYLAQ (Q6ELV8) Cytochrome b	29	7.3
36	CYB_ROMDI (Q9G6G3) Cytochrome b	29	7.3
37	CYB_RAPSH (O99338) Cytochrome b	29	7.3
38	CYB_PENFU (Q9B1X4) Cytochrome b	29	7.3
39	CYB_OREOR (Q9T9A6) Cytochrome b	29	7.3
40	CYB_MUNMU (Q9TDQ7) Cytochrome b	29	7.3
41	CYB_LEPBR (Q959V6) Cytochrome b	29	7.3
42	CYB_LAMVI (Q36227) Cytochrome b	29	7.3
43	CYB_LAMPA (Q34916) Cytochrome b	29	7.3
44	CYB_LAMGU (Q34890) Cytochrome b	29	7.3
45	CYB_LAMGL (Q34891) Cytochrome b	29	7.3
46	CYB_BUNMO (Q6ELW6) Cytochrome b	29	7.3
47	CYB_BRAID (Q6ELW3) Cytochrome b	29	7.3
48	CYB_BASAS (Q85IN3) Cytochrome b	29	7.3
49	CYB_ARCTR (Q9B9F9) Cytochrome b	29	7.3
50	AFF2_HUMAN (P51816) AF4/FMR2 family member 2 (Fragile X mental r...	29	7.3
51	AFF2_PONPY (Q7YQM1) AF4/FMR2 family member 2 (Fragile X mental r...	29	7.3
52	AFF2_PANTR (Q7YQM2) AF4/FMR2 family member 2 (Fragile X mental r...	29	7.3
53	PARB1_DEIRA (Q9RYD8) Probable chromosome 1 partitioning protein ...	29	7.3
54	CYB_SYLTR (O47414) Cytochrome b (Fragment)	29	7.3
55	CYB_MYODA (Q957B5) Cytochrome b	29	9.5
56	CYB_EULCO (Q5VJ65) Cytochrome b	29	9.5
57	GAG_HV2D2 (P15832) Gag polyprotein (Pr55Gag) [Contains: Matrix p...	29	9.5
58	YG3A_YEAST (P53278) Hypothetical 92.7 kDa protein in ASN2-PHB1 i...	29	9.5
59	POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	29	9.5
60	PARB_XYLFT (Q87BY1) Probable chromosome partitioning protein parB	29	9.5
61	CYB_PHEIN (Q9XNN3) Cytochrome b	29	9.5
62	CD2_MOUSE (P08920) T-cell surface antigen CD2 precursor (T-cell ...	29	9.5
63	PIGQ_HUMAN (Q9BRB3) Phosphatidylinositol N-acetylglucosaminyltra...	29	9.5
64	PDXS_METTH (O26762) Pyridoxal biosynthesis lyase pdxS (EC 4.-.-.-)	29	9.5

>SRX_DROME (Q9VX10) Putative sulfiredoxin (EC 1.8.98.2)|
          Length = 162

 Score = 58.5 bits (140), Expect = 1e-08
 Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 8/90 (8%)
 Frame = -3

Query: 381 IPLEDIRRPLMRTRANDPEKVQELMDSIRVIGLQ---VPIDVLEVDG-----VYYGFSGC 226
           +P+  I+RP+      D +KVQ LM++I+    +    PID+L + G      Y+ F GC
Sbjct: 66  VPMSVIQRPIPSVL--DEQKVQSLMETIKNETSEDEVPPIDLLWISGSEGGDYYFSFGGC 123

Query: 225 HRYEAHQRLGLPTIRCKVRRGTKETLRHHM 136
           HR+EA++RL  PTI+ K+ + T   L H+M
Sbjct: 124 HRFEAYKRLQRPTIKAKLVKSTLGDLYHYM 153

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>SRXN1_MOUSE (Q9D975) Sulfiredoxin-1 (EC 1.8.98.2) (Neoplastic progression|
           protein 3)
          Length = 136

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 38/91 (41%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
 Frame = -3

Query: 390 VMEIPLEDIRRPLMRTRANDPEKVQELMDSIRVIGLQVP-IDVLEVDGV-----YYGFSG 229
           V  +P+  + RPL      DP KVQ L+D+I      VP IDVL + G      YY F G
Sbjct: 40  VHNVPIAVLIRPLPSVL--DPAKVQSLVDTILADPDSVPPIDVLWIKGAQGGDYYYSFGG 97

Query: 228 CHRYEAHQRLGLPTIRCKVRRGTKETLRHHM 136
           CHRY A+Q+L   TI  K+ R T   LR ++
Sbjct: 98  CHRYAAYQQLQRETIPAKLVRSTLSDLRMYL 128

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>SRXN1_HUMAN (Q9BYN0) Sulfiredoxin-1 (EC 1.8.98.2)|
          Length = 137

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 38/91 (41%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
 Frame = -3

Query: 390 VMEIPLEDIRRPLMRTRANDPEKVQELMDSIRVIGLQVP-IDVLEVDGV-----YYGFSG 229
           V  +PL  + RPL      DP KVQ L+D+IR     VP IDVL + G      +Y F G
Sbjct: 41  VHNVPLSVLIRPLPSVL--DPAKVQSLVDTIREDPDSVPPIDVLWIKGAQGGDYFYSFGG 98

Query: 228 CHRYEAHQRLGLPTIRCKVRRGTKETLRHHM 136
           CHRY A+Q+L   TI  K+ + T   LR ++
Sbjct: 99  CHRYAAYQQLQRETIPAKLVQSTLSDLRVYL 129

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>SRX1_YEAST (P36077) Sulfiredoxin (EC 1.8.98.2) (Sulphiredoxin)|
          Length = 127

 Score = 47.4 bits (111), Expect = 3e-05
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 28/111 (25%)
 Frame = -3

Query: 384 EIPLEDIRRPLMRTRANDPEKVQELMDSIRVI------------------GLQVPIDVLE 259
           EIPL +IRRPL      DP+K+  ++ +++ I                  G   P+DVL 
Sbjct: 12  EIPLSEIRRPLAPVL--DPQKIDAMVATMKGIPTASKTCSLEQAEAAASAGELPPVDVLG 69

Query: 258 V----DGVYYGFSGCHRYEAHQRLGLPT------IRCKVRRGTKETLRHHM 136
           V      +YY F GCHR +A+ R    T      +RC+V   T   +R ++
Sbjct: 70  VRVKGQTLYYAFGGCHRLQAYDRRARETQNAAFPVRCRVLPATPRQIRMYL 120

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>PARB2_DEIRA (Q9RZE7) Probable chromosome 2 partitioning protein parB (Probable|
           chromosome II partitioning protein parB)
          Length = 293

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 25/66 (37%), Positives = 36/66 (54%)
 Frame = -3

Query: 342 RANDPEKVQELMDSIRVIGLQVPIDVLEVDGVYYGFSGCHRYEAHQRLGLPTIRCKVRRG 163
           R+ D E++ EL +SIR  G+  P+ V  VDG Y   +G  R+ A Q  GL  +   VR+ 
Sbjct: 46  RSFDLERLSELAESIRAHGVLQPLLVRSVDGQYEIVAGERRWRAAQLAGLAEVPVVVRQL 105

Query: 162 TKETLR 145
           + E  R
Sbjct: 106 SNEQAR 111

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>PARB_PSEPU (P0A152) Probable chromosome partitioning protein parB|
          Length = 290

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
 Frame = -3

Query: 390 VMEIPLEDIRRPLMRTRAN-DPEKVQELMDSIRVIGLQVPIDVLEV-DGVYYGFSGCHRY 217
           +  +P+E ++R   + R + DPE ++EL  SIR  G+  PI V  + D  Y   +G  R+
Sbjct: 36  LQHLPVELVQRGKYQPRRDMDPEALEELAHSIRNHGVMQPIVVRPIGDNRYEIIAGERRW 95

Query: 216 EAHQRLGLPTIRCKVR 169
            A Q+ GL TI   VR
Sbjct: 96  RATQQAGLDTIPAMVR 111

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>PARB_PSEPK (P0A151) Probable chromosome partitioning protein parB|
          Length = 290

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
 Frame = -3

Query: 390 VMEIPLEDIRRPLMRTRAN-DPEKVQELMDSIRVIGLQVPIDVLEV-DGVYYGFSGCHRY 217
           +  +P+E ++R   + R + DPE ++EL  SIR  G+  PI V  + D  Y   +G  R+
Sbjct: 36  LQHLPVELVQRGKYQPRRDMDPEALEELAHSIRNHGVMQPIVVRPIGDNRYEIIAGERRW 95

Query: 216 EAHQRLGLPTIRCKVR 169
            A Q+ GL TI   VR
Sbjct: 96  RATQQAGLDTIPAMVR 111

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>SRX1_SCHPO (Q9URV9) Putative sulfiredoxin (EC 1.8.98.2)|
          Length = 124

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 19/104 (18%)
 Frame = -3

Query: 390 VMEIPLEDIRRPLMRTRANDPEKVQELMDSIR---------------VIGLQVPIDVLEV 256
           ++E+ + ++ RP+      D  KV  +M+++                  G   P+DVL  
Sbjct: 12  IVELDMSELIRPIPPVL--DMNKVNSMMETMTGKTPPASCGLTSEDLEAGELPPVDVLTF 69

Query: 255 DG----VYYGFSGCHRYEAHQRLGLPTIRCKVRRGTKETLRHHM 136
                  Y+ F GCHR  AH   G   +RCK+   +  TLR ++
Sbjct: 70  KKSGKPYYFAFGGCHRLRAHDEAGRKKVRCKLVNCSPNTLRLYL 113

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>PARB_CHLPN (Q9Z7M0) Probable chromosome partitioning protein parB|
          Length = 286

 Score = 35.4 bits (80), Expect = 0.10
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
 Frame = -3

Query: 390 VMEIPLEDIR-RPLMRTRANDPEKVQELMDSIRVIGLQVPIDVLEV---DGVYYG--FSG 229
           ++E+ ++DIR  P    R    E++QEL+ SI+ +GL  P  V E+   D V Y    +G
Sbjct: 10  IIEVAIDDIRVSPFQPRRVFSNEELQELIASIKAVGLIHPPVVREICTGDRVLYYELIAG 69

Query: 228 CHRYEAHQRLGLPTI 184
             R+ A Q  G  TI
Sbjct: 70  ERRWRAMQLAGATTI 84

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>HNF3B_RAT (P32182) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box|
           protein A2)
          Length = 458

 Score = 33.9 bits (76), Expect = 0.29
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +3

Query: 372 PAGSPSPQGLSSPCRSMGRGQLHHWKTRPRQRGRTARSCSSPGEQ 506
           PAG+ SP   +SPC+   RG L   K  P           SPG+Q
Sbjct: 298 PAGTESPHSSASPCQEHKRGGLSELKGTPASALSPPEPAPSPGQQ 342

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>HNF3B_MOUSE (P35583) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box|
           protein A2)
          Length = 459

 Score = 33.9 bits (76), Expect = 0.29
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +3

Query: 372 PAGSPSPQGLSSPCRSMGRGQLHHWKTRPRQRGRTARSCSSPGEQ 506
           PAG+ SP   +SPC+   RG L   K  P           SPG+Q
Sbjct: 299 PAGTESPHSSASPCQEHKRGGLSELKGAPASALSPPEPAPSPGQQ 343

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>HNF3B_HUMAN (Q9Y261) Hepatocyte nuclear factor 3-beta (HNF-3B) (Forkhead box|
           protein A2)
          Length = 457

 Score = 33.1 bits (74), Expect = 0.50
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +3

Query: 372 PAGSPSPQGLSSPCRSMGRGQLHHWKTRPRQRGRTARSCSSPGEQ 506
           PAG+ SP   +SPC+   RG L   K  P           SPG+Q
Sbjct: 298 PAGTESPHSSASPCQEHKRGGLGELKGTPAAALSPPEPAPSPGQQ 342

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>PARB_NEIMB (Q9JXP5) Probable chromosome partitioning protein parB|
          Length = 286

 Score = 32.3 bits (72), Expect = 0.86
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = -3

Query: 399 GPVVMEIPLEDIRRPLMRTRAN-DPEKVQELMDSIRVIGLQVPIDVLEVD-GVYYGFSGC 226
           G  +  + ++DIR    + R   D E +QEL DSI+  G+  P+ V E     Y   +G 
Sbjct: 25  GDRLTTVAVKDIRPGRYQARVQIDDEALQELADSIKAQGVIQPVIVREHGLSRYELIAGE 84

Query: 225 HRYEAHQRLGLPTIRCKVRRGTKET 151
            R+ A Q  GL  I   ++  + ET
Sbjct: 85  RRWRAAQIAGLTEIPAVIKTISDET 109

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>PARB_NEIMA (Q9JW77) Probable chromosome partitioning protein parB|
          Length = 286

 Score = 32.3 bits (72), Expect = 0.86
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = -3

Query: 399 GPVVMEIPLEDIRRPLMRTRAN-DPEKVQELMDSIRVIGLQVPIDVLEVD-GVYYGFSGC 226
           G  +  + ++DIR    + R   D E +QEL DSI+  G+  P+ V E     Y   +G 
Sbjct: 25  GDRLTTVAVKDIRPGRYQARVQIDDEALQELADSIKAQGVIQPVIVREHGLSRYELIAGE 84

Query: 225 HRYEAHQRLGLPTIRCKVRRGTKET 151
            R+ A Q  GL  I   ++  + ET
Sbjct: 85  RRWRAAQIAGLTEIPAVIKTISDET 109

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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = -2

Query: 334 RS*EGAGAHGQHPCHRPPSTYRRAGSRRSLLRILWMPSIRGSPAPRTPNHPLQSPPRDQR 155
           RS   +    + P H  P    R+ SR    R    P  R SP  RTP   +  PPR +R
Sbjct: 279 RSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRR 338

Query: 154 N 152
           +
Sbjct: 339 S 339

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>MAP1_SCHPO (P78926) Pheromone receptor transcription activator (MAP1 protein)|
          Length = 398

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 10/60 (16%)
 Frame = -2

Query: 307 GQHPCHRPPSTYRRAGSRRSLLRILWMPSIRGSPAPRTP----------NHPLQSPPRDQ 158
           GQH  + PPSTY+    RRSL +     S      P+TP          + PL  PPRD+
Sbjct: 264 GQHSVNSPPSTYKH---RRSLNK-----SFATRSEPQTPRKNKIRDSLQSSPLNFPPRDR 315

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>CYB_OKAJO (Q6YLN1) Cytochrome b|
          Length = 379

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           +L +L+MP + G P   TP +PL +PP
Sbjct: 240 MLLVLFMPDLLGDPDNYTPANPLSTPP 266

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>CYB_HEMJE (O78783) Cytochrome b|
          Length = 379

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           +L +L+MP + G P   TP +PL +PP
Sbjct: 240 MLLVLFMPDLLGDPDNYTPANPLNTPP 266

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>CYB_ALCLI (O99257) Cytochrome b|
          Length = 379

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP--RDQRNTAAPYAMNRWL 119
           +L +L+ P + G P   TP +PL +PP  + +      YA+ RW+
Sbjct: 240 MLLVLFAPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRWI 284

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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = -2

Query: 334 RS*EGAGAHGQHPCHRPPSTYRRAGSRRSLLRILWMPSIRGSPAPRTPNHPLQSPPRDQR 155
           RS   +    + P H  P    R+ SR    R    P  R SP  RTP   +  PPR +R
Sbjct: 281 RSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRR 340

Query: 154 N 152
           +
Sbjct: 341 S 341

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>CYB_CAPSI (O78784) Cytochrome b|
          Length = 380

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           +L +L+MP + G P   TP +PL +PP
Sbjct: 240 MLLVLFMPDLLGDPDNYTPANPLNTPP 266

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>TNPA_BACTU (P10021) Transposase for transposon Tn4430|
          Length = 987

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +1

Query: 274 RYLEADDTDAVHELLHLLRIVSTRSH*RPTDIFQRDLHHHRAF---LLRVAQWEEAS 435
           +++  DD +       L  +   R+H R  DIF     HH+AF   L+   +W E S
Sbjct: 443 KHVYDDDGNINRHYYELAALTELRNHIRSGDIFVSGSRHHKAFDDYLIPYDEWNEVS 499

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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 30.8 bits (68), Expect = 2.5
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = -2

Query: 334 RS*EGAGAHGQHPCHRPPSTYRRAGSRRSLLRILWMPSIRGSPAPRTPNHPLQSPPRDQR 155
           RS   +    + P H  P    R+ SR    R    P  R SP  RTP   +  PPR +R
Sbjct: 281 RSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRR 340

Query: 154 N 152
           +
Sbjct: 341 S 341

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>CYB_THRSW (Q9B6F0) Cytochrome b|
          Length = 379

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           LL +L+ P I G P   TP +PL +PP
Sbjct: 240 LLLVLFFPDILGDPDNYTPANPLNTPP 266

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>VGLG_HHV2H (P13290) Glycoprotein G|
          Length = 699

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -2

Query: 289 RPPSTYRRAGSRRSLLRILWMPSIRGSPAPRTPNHPLQSPPRDQRNTAAP 140
           R P+  +   +R   +R    P I G  AP TP  P Q+P +D  +   P
Sbjct: 585 RTPNPNKPPPARPGPIRPTLPPGILGPLAPNTPRPPAQAPAKDMPSGPTP 634

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>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 20/61 (32%), Positives = 27/61 (44%)
 Frame = -2

Query: 334 RS*EGAGAHGQHPCHRPPSTYRRAGSRRSLLRILWMPSIRGSPAPRTPNHPLQSPPRDQR 155
           RS   + +  + P H  P    R+ SRR        P  R SP  RTP   +  PPR +R
Sbjct: 282 RSKSRSRSRSRSPSHSRPRRRHRSRSRRRP-----SPRRRPSPRRRTPPRRMPPPPRHRR 336

Query: 154 N 152
           +
Sbjct: 337 S 337

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>RF1_BDEBA (Q6MRK9) Peptide chain release factor 1 (RF-1)|
          Length = 357

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -3

Query: 387 MEIPLEDIRRPLMRTRANDPEKVQELMDSIRVIGLQVPIDV 265
           ++IP+ D+R   MR++ +  + V     ++RV+ L   IDV
Sbjct: 213 IKIPMSDVRIETMRSQGSGGQSVNRTESAVRVVHLPTGIDV 253

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>CYB_RHIUN (Q96071) Cytochrome b|
          Length = 379

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           L+ +L+ P I G P   TP +PL +PP
Sbjct: 240 LILVLFFPDILGDPDNYTPANPLSTPP 266

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>RL10_SYNEL (Q8DM26) 50S ribosomal protein L10|
          Length = 178

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 21/63 (33%), Positives = 27/63 (42%)
 Frame = -3

Query: 348 RTRANDPEKVQELMDSIRVIGLQVPIDVLEVDGVYYGFSGCHRYEAHQRLGLPTIRCKVR 169
           RT AN  E V EL + +R   + + ID       Y G S     +  QRL      CKV 
Sbjct: 6   RTLANKKEIVAELKERLRESQMALVID-------YQGLSDAEMKDLRQRLRKCNASCKVT 58

Query: 168 RGT 160
           + T
Sbjct: 59  KNT 61

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>PARB_XYLFA (Q9PB63) Probable chromosome partitioning protein parB|
          Length = 310

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -3

Query: 348 RTRANDPEKVQELMDSIRVIGLQVPIDVLEVD-GVYYGFSGCHRYEAHQRLGLPTIRCKV 172
           R   ++P K+ EL DSI+  G+  PI V E+D  ++   +G  R+ A Q  GL  +   V
Sbjct: 59  RREMSEP-KLAELADSIKAQGVIQPIIVRELDVDMFEIVAGERRWRASQLAGLTEVPVLV 117

Query: 171 R 169
           R
Sbjct: 118 R 118

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>CYB_TRANA (P24965) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           LL +L+ P + G P   TP +PL +PP
Sbjct: 240 LLLVLFSPDLLGDPDNYTPANPLNTPP 266

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>CYB_SYLOB (Q6ELV9) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           LL +L+ P + G P   TP +PL +PP
Sbjct: 240 LLLVLFSPDLLGDPDNYTPANPLNTPP 266

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>CYB_SYLFL (O47415) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           LL +L+ P + G P   TP +PL +PP
Sbjct: 240 LLLVLFSPDLLGDPDNYTPANPLNTPP 266

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>CYB_SYLAU (Q6ELW2) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           LL +L+ P + G P   TP +PL +PP
Sbjct: 240 LLLVLFSPDLLGDPDNYTPANPLNTPP 266

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>CYB_SYLAQ (Q6ELV8) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           LL +L+ P + G P   TP +PL +PP
Sbjct: 240 LLLVLFSPDLLGDPDNYTPANPLNTPP 266

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>CYB_ROMDI (Q9G6G3) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           LL +L+ P + G P   TP +PL +PP
Sbjct: 240 LLLVLFSPDLLGDPDNYTPANPLNTPP 266

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>CYB_RAPSH (O99338) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           +L +L++P + G P   TP +PL +PP
Sbjct: 240 MLLVLFVPDLLGDPDNYTPANPLNTPP 266

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>CYB_PENFU (Q9B1X4) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           LL +L+ P + G P   TP +PL +PP
Sbjct: 240 LLLVLFSPDLLGDPDNYTPANPLSTPP 266

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>CYB_OREOR (Q9T9A6) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           LL +L+ P + G P   TP +PL +PP
Sbjct: 240 LLLVLFTPDLLGDPDNYTPANPLNTPP 266

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>CYB_MUNMU (Q9TDQ7) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           +L +L++P + G P   TP +PL +PP
Sbjct: 240 MLLVLFVPDLLGDPDNYTPANPLNTPP 266

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>CYB_LEPBR (Q959V6) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           LL +L+ P + G P   TP +PL +PP
Sbjct: 240 LLLVLFSPDLLGDPDNYTPANPLNTPP 266

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>CYB_LAMVI (Q36227) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           LL +L+ P + G P   TP +PL +PP
Sbjct: 240 LLLVLFSPDLLGDPDNYTPANPLNTPP 266

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>CYB_LAMPA (Q34916) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           LL +L+ P + G P   TP +PL +PP
Sbjct: 240 LLLVLFSPDLLGDPDNYTPANPLNTPP 266

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>CYB_LAMGU (Q34890) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           LL +L+ P + G P   TP +PL +PP
Sbjct: 240 LLLVLFSPDLLGDPDNYTPANPLNTPP 266

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>CYB_LAMGL (Q34891) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           LL +L+ P + G P   TP +PL +PP
Sbjct: 240 LLLVLFSPDLLGDPDNYTPANPLNTPP 266

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>CYB_BUNMO (Q6ELW6) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           LL +L+ P + G P   TP +PL +PP
Sbjct: 240 LLLVLFSPDLLGDPDNYTPANPLNTPP 266

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>CYB_BRAID (Q6ELW3) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           LL +L+ P + G P   TP +PL +PP
Sbjct: 240 LLLVLFSPDLLGDPDNYTPANPLNTPP 266

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>CYB_BASAS (Q85IN3) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 238 ILWMPSIRGSPAPRTPNHPLQSPP 167
           +L+MP + G P   TP +PL +PP
Sbjct: 243 VLFMPDLLGDPDNYTPANPLNTPP 266

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>CYB_ARCTR (Q9B9F9) Cytochrome b|
          Length = 379

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           LL +L+ P + G P   TP +PL +PP
Sbjct: 240 LLLVLFSPDLLGDPDNYTPANPLNTPP 266

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>AFF2_HUMAN (P51816) AF4/FMR2 family member 2 (Fragile X mental retardation 2|
            protein) (Protein FMR-2) (FMR2P) (Ox19 protein) (Fragile
            X E mental retardation syndrome protein)
          Length = 1311

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
 Frame = -2

Query: 298  PCHRPPSTYRRAGSRRSLLR---ILWMPSIRGSPAPRTPNHPLQSPPRDQRNTA---APY 137
            P H+PP+T     SRR+  R    L+ P +  SP P       + PPR +RN +    P+
Sbjct: 888  PPHKPPNTRENNSSRRANRRKEEKLFPPPL--SPLP-------EDPPR-RRNVSGNNGPF 937

Query: 136  AMNRWLAMNGQ 104
              ++ +AM GQ
Sbjct: 938  GQDKNIAMTGQ 948

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>AFF2_PONPY (Q7YQM1) AF4/FMR2 family member 2 (Fragile X mental retardation|
            protein 2 homolog) (Protein FMR-2)
          Length = 1272

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
 Frame = -2

Query: 298  PCHRPPSTYRRAGSRRSLLR---ILWMPSIRGSPAPRTPNHPLQSPPRDQRNTA---APY 137
            P H+PP+T     SRR+  R    L+ P +  SP P       + PPR +RN +    P+
Sbjct: 849  PPHKPPNTRENNSSRRANRRKEEKLFPPPL--SPLP-------EDPPR-RRNVSGNNGPF 898

Query: 136  AMNRWLAMNGQ 104
              ++ +AM GQ
Sbjct: 899  GQDKNIAMTGQ 909

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>AFF2_PANTR (Q7YQM2) AF4/FMR2 family member 2 (Fragile X mental retardation|
            protein 2 homolog) (Protein FMR-2)
          Length = 1272

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
 Frame = -2

Query: 298  PCHRPPSTYRRAGSRRSLLR---ILWMPSIRGSPAPRTPNHPLQSPPRDQRNTA---APY 137
            P H+PP+T     SRR+  R    L+ P +  SP P       + PPR +RN +    P+
Sbjct: 849  PPHKPPNTRENNSSRRANRRKEEKLFPPPL--SPLP-------EDPPR-RRNVSGNNGPF 898

Query: 136  AMNRWLAMNGQ 104
              ++ +AM GQ
Sbjct: 899  GQDKNIAMTGQ 909

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>PARB1_DEIRA (Q9RYD8) Probable chromosome 1 partitioning protein parB (Probable|
           chromosome I partitioning protein parB)
          Length = 288

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = -3

Query: 399 GPVVMEIPLEDIRRPLMRTR-ANDPEKVQELMDSIRVIGLQVPIDVLEVDGVYYGFSGCH 223
           G  V  + +E I +   + R   +PE + EL  SIR  G+  P+ V      +   +G  
Sbjct: 28  GTQVQTLKIERIAQAAYQPRQVFEPESLAELAQSIREKGVLQPLLVRPRGDAFEIVAGER 87

Query: 222 RYEAHQRLGLPTIRCKVR-RGTKETL 148
           R+ A Q  GL  +   +R  G +E L
Sbjct: 88  RWRASQLAGLTELPVMIRDLGDREAL 113

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>CYB_SYLTR (O47414) Cytochrome b (Fragment)|
          Length = 372

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           LL +L+ P + G P   TP +PL +PP
Sbjct: 233 LLLVLFSPDLLGDPDNYTPANPLNTPP 259

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>CYB_MYODA (Q957B5) Cytochrome b|
          Length = 379

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           LL +L+ P + G P   TP +PL +PP
Sbjct: 240 LLLVLFSPDMLGDPDNYTPANPLNTPP 266

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>CYB_EULCO (Q5VJ65) Cytochrome b|
          Length = 379

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 250 SLLRILWMPSIRGSPAPRTPNHPLQSPP 167
           +L+ +L+ P + G P   TP +PL +PP
Sbjct: 239 TLILVLFSPDLLGDPDNYTPANPLNTPP 266

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>GAG_HV2D2 (P15832) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 351 LAAYGYLPAGSPSPQGLSSPCRSMG-RGQLHHWKTRPRQRGRTARSCSSPGEQGRWERRC 527
           L A     A +P+P   ++  +  G RG +  W     ++G TAR C +P  QG W  +C
Sbjct: 358 LMAEALKEALTPAPIPFAAVQQKAGKRGTVTCWNCG--KQGHTARQCRAPRRQGCW--KC 413

Query: 528 G 530
           G
Sbjct: 414 G 414

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>YG3A_YEAST (P53278) Hypothetical 92.7 kDa protein in ASN2-PHB1 intergenic|
           region
          Length = 816

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 281 KYLSTCWKSTESTTDSLDAIDTRLTSA*DSQPSAAKSA 168
           KYL  C K T+ T D  D  DT  +S+  +  S++ S+
Sbjct: 140 KYLKKCQKITDLTKDEKDDTDTTTSSSTSTSSSSSSSS 177

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>POL_HV2D2 (P15833) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1464

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 351 LAAYGYLPAGSPSPQGLSSPCRSMG-RGQLHHWKTRPRQRGRTARSCSSPGEQGRWERRC 527
           L A     A +P+P   ++  +  G RG +  W     ++G TAR C +P  QG W  +C
Sbjct: 358 LMAEALKEALTPAPIPFAAVQQKAGKRGTVTCWNCG--KQGHTARQCRAPRRQGCW--KC 413

Query: 528 G 530
           G
Sbjct: 414 G 414

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>PARB_XYLFT (Q87BY1) Probable chromosome partitioning protein parB|
          Length = 310

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -3

Query: 324 KVQELMDSIRVIGLQVPIDVLEVD-GVYYGFSGCHRYEAHQRLGLPTIRCKVR 169
           K+ EL DSI+  G+  PI V E+D  ++   +G  R+ A Q  GL  +   VR
Sbjct: 66  KLAELADSIKAQGVIQPIIVRELDVDMFEIVAGERRWRASQLAGLTEVPVIVR 118

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>CYB_PHEIN (Q9XNN3) Cytochrome b|
          Length = 380

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 LLRILWMPSIRGSPAPRTPNHPLQSPP 167
           ++ +L+ P I G P   TP +PL +PP
Sbjct: 240 MILVLFFPDILGDPDNYTPANPLNTPP 266

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>CD2_MOUSE (P08920) T-cell surface antigen CD2 precursor (T-cell surface|
           antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (Lymphocyte
           antigen Ly-37)
          Length = 344

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
 Frame = -2

Query: 535 PPPHRRSQ----RPCSPGE---EQERAVRPRCLGL-VFQWCSWPLPIERHGEERPCGDGD 380
           PPP    Q    RP  PG    E ++  RP   G  + Q    PLP  R   + PCG GD
Sbjct: 277 PPPGHHLQTPGHRPLPPGHRTREHQQKKRPPPSGTQIHQQKGPPLPRPRVQPKPPCGSGD 336

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>PIGQ_HUMAN (Q9BRB3) Phosphatidylinositol N-acetylglucosaminyltransferase|
           subunit Q (EC 2.4.1.198) (Phosphatidylinositol-glycan
           biosynthesis, class Q protein) (PIG-Q)
           (N-acetylglucosamyl transferase component GPI1)
          Length = 759

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -2

Query: 487 QERAVRPRCLGLVFQWCSWPLPIERH---GEERPCGDGDPAGRYP*AANA 347
           Q + VRP     V  W  W LP       G E PC D  P+ R+P A +A
Sbjct: 669 QVQRVRPPQQPQVEGWSPWGLPSGSALAVGVEGPCQDEPPSPRHPLAPSA 718

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>PDXS_METTH (O26762) Pyridoxal biosynthesis lyase pdxS (EC 4.-.-.-)|
          Length = 293

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
 Frame = -3

Query: 369 DIRRPLMRTRANDPEKVQELMDSIRV-------IGLQVPIDVLEVDGV 247
           DIR      R  DP KVQE+MD++ +       IG  V   VLE  GV
Sbjct: 50  DIRASGGVARMADPNKVQEIMDAVSIPVMAKVRIGHFVEAQVLEALGV 97


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,698,818
Number of Sequences: 219361
Number of extensions: 1726996
Number of successful extensions: 6643
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 6232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6624
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result