>EBNA3_EBV (P12977) Epstein-Barr nuclear antigen 3 (EBV nuclear antigen 3)|
           (EBNA-3) (EBNA-3A)
          Length = 812

 Score = 32.0 bits (71), Expect = 0.73
 Identities = 30/83 (36%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
 Frame = +3

Query: 150 GRWVP--WTGQGEPPSRGACPVRAGCQSLGAS*GNLQIQNHPRNLSLPHIPA*MMAMHL- 320
           G WVP  W  QG PPS+G   V+    +LG +   L   NHP    +P  PA +   HL 
Sbjct: 648 GPWVPEQWMFQGAPPSQGTDVVQHQLDALGYT---LHGLNHP---GVPVSPA-VNQYHLS 700

Query: 321 -GAFG-------TWRGSGRRDPC 365
             AFG       +  GS   +PC
Sbjct: 701 QAAFGLPIDEDESGEGSDTSEPC 723

>RNAS1_MYOGL (Q9WUS1) Ribonuclease pancreatic precursor (EC 3.1.27.5) (RNase 1)|
           (RNase A)
          Length = 156

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 215 CAYRTCTTGWRFALACPRDPSAPVSIDST 129
           CAYRT     R  +AC  DPS PV  D +
Sbjct: 123 CAYRTTQKVKRIVVACEGDPSVPVHYDGS 151

>ZEP2_HUMAN (P31629) Human immunodeficiency virus type I enhancer-binding protein|
            2 (HIV-EP2) (MHC-binding protein 2) (MBP-2)
          Length = 2446

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 267  DDFG-FEDYLNLPQDSDSLRVPDMHHGMEVRLGLSKGPICP 148
            D+FG   ++L +P  S SL VP  HH  E+R   S+   CP
Sbjct: 998  DEFGKHSEFLTVPAGSYSLSVPGHHHQKEMRRCSSEQMPCP 1038

>RNAS2_AOTTR (O18937) Nonsecretory ribonuclease precursor (EC 3.1.27.5)|
           (Ribonuclease US) (Eosinophil-derived neurotoxin) (RNase
           UpI-2) (Ribonuclease 2) (RNase 2)
          Length = 158

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
 Frame = -3

Query: 314 HCHHLCWDMRQ*QVPWMILDLKITLTCPKTLTACAYRTCTTGWRFALAC--------PRD 159
           +CHH      + QVP    +L    T P T+T C Y +      + +AC        P+ 
Sbjct: 97  NCHH-----SRVQVPLTYCNL----TGPPTITNCVYSSTQANMFYVVACDNRDQRDPPQY 147

Query: 158 PSAPVSIDST 129
           P  PV +D+T
Sbjct: 148 PVVPVHLDTT 157

>MTFA_PSEPK (Q88L23) Putative RNA 2'-O-ribose methyltransferase mtfA (EC|
           2.1.1.-)
          Length = 354

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = +1

Query: 67  QPSDWYRCWTGSTTYHKTN---TWVESIETGADGSLGQAKANLHPVVHVRYAQAVRVLGQ 237
           QP DW  C         T+   TW+       +G   +A  NL   +  RYA+  R+L +
Sbjct: 263 QPVDWMVCDIVEKPARTTSLIETWL------GEGLCREAVVNLKLPMKQRYAEVRRLLDR 316

Query: 238 VKVIFKSKIIQGTCHC 285
           ++  FK++ I+ +  C
Sbjct: 317 MEATFKARKIRVSIAC 332

>DPO3_MYCGE (P47277) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)|
          Length = 1451

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 444 IHKESKFWDDKKKFGTEAIYGSAFNIRKD 358
           IH   KF++  KK+  +AIYG  FN+  D
Sbjct: 370 IHIYPKFYEVAKKYDLKAIYGLEFNLTDD 398

>RNAS2_SAGOE (P47786) Nonsecretory ribonuclease precursor (EC 3.1.27.5)|
           (Ribonuclease US) (Eosinophil-derived neurotoxin) (RNase
           UpI-2) (Ribonuclease 2) (RNase 2)
          Length = 158

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
 Frame = -3

Query: 242 LTCPKTLTACAYRTCTTGWRFALAC----PRDPS----APVSIDST 129
           LT P+T++ C Y +      + +AC    PRDP      PV +D+T
Sbjct: 112 LTGPQTISNCVYSSTQANMFYVVACDNRDPRDPPQYPVVPVHLDTT 157

>SSH3_HUMAN (Q8TE77) Protein phosphatase Slingshot homolog 3 (EC 3.1.3.48) (EC|
           3.1.3.16) (SSH-3L) (hSSH-3L)
          Length = 659

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 439 QGVQVLGRQEEVRDRGHLRIRLQHPQGS-RRPDPLQVPKAPR 317
           QG Q   +QEE R   HL ++L  PQ   R    L+ P+ PR
Sbjct: 83  QGSQSPQKQEEQRQHLHLMVQLLRPQDDIRLAAQLEAPRPPR 124

>RPOA_NOCFA (Q5Z1K9) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 352

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = -2

Query: 417 DKKKFGTEAIYGSAFNIRKDLDAQILSRFQRPPGALPSSMLGYEAMTGSLDDFG 256
           D + FG ++I      ++  L A  LS    P    PSS++GY+A TG+  D G
Sbjct: 285 DIRNFGQKSID----EVKVKLHALGLSLKDSPASFDPSSVVGYDASTGTWSDSG 334

>RNAS4_MOUSE (Q9JJH1) Ribonuclease 4 precursor (EC 3.1.27.-) (RNase 4)|
          Length = 148

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 215 CAYRTCTTGWRFALACPRDPSAPVSID 135
           C YR  T+  R  +AC  DP  PV  D
Sbjct: 121 CRYRARTSTRRVVIACEGDPEVPVHFD 147

>SYD_LACPL (Q88VQ8) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 598

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = -2

Query: 354 DAQILSRFQRPPGALPSSMLGYEAMTGSLDDFGFEDYLNLPQDSDSLRVPDMHHGMEVRL 175
           DA+IL++ + PP  +              DD    D L L      LR P+M  G+++R 
Sbjct: 100 DAKILNKAKTPPFYIQ-------------DDINVSDELRLKYRYLDLRRPEMQRGLKIRN 146

Query: 174 GLSK 163
           G+++
Sbjct: 147 GITQ 150

>CLCN1_MOUSE (Q64347) Chloride channel protein, skeletal muscle (Chloride|
           channel protein 1) (ClC-1)
          Length = 994

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +1

Query: 103 TTYHKTNTWVESIETGADGSLGQAKANLHPVVHV 204
           +T    NTWV+ I  G   SLGQ+   LHP V+V
Sbjct: 425 STLFDNNTWVKHI--GDPQSLGQSAVWLHPQVNV 456

>ZEP2_RAT (Q00900) Human immunodeficiency virus type I enhancer-binding protein|
            2 homolog (DNA-binding protein AGIE-BP1) (Angiotensinogen
            gene-inducible enhancer-binding protein 1) (Myc
            intron-binding protein 1)
          Length = 2437

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 249  DYLNLPQDSDSLRVPDMHHGMEVRLGLSKGPICP 148
            ++L +P  S SL VP  HH  E+R   S+   CP
Sbjct: 1002 EFLTVPAGSYSLSVPGHHHQKEMRRCSSEQMPCP 1035

>ZEP2_MOUSE (Q3UHF7) Human immunodeficiency virus type I enhancer-binding protein|
            2 homolog (Myc intron-binding protein 1) (MIBP-1)
          Length = 2430

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 249  DYLNLPQDSDSLRVPDMHHGMEVRLGLSKGPICP 148
            ++L +P  S SL VP  HH  E+R   S+   CP
Sbjct: 997  EFLTVPAGSYSLSVPGHHHQKEMRRCSSEQMPCP 1030


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,788,313
Number of Sequences: 219361
Number of extensions: 1519074
Number of successful extensions: 4422
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4422
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)