ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd20n17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK069830.1| Oryza sativa (japonica cultivar-group) cDNA clon... 313 3e-82
2gb|AY105712.1| Zea mays PCO130616 mRNA sequence 303 3e-79
3gb|AY104566.1| Zea mays PCO130617 mRNA sequence 297 2e-77
4gb|BT016426.1| Zea mays clone Contig259 mRNA sequence 295 6e-77
5ref|XM_463066.1| Oryza sativa (japonica cultivar-group), mRNA 270 4e-69
6dbj|AK072342.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 9e-64
7dbj|AK072332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 9e-64
8dbj|AK067815.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 9e-64
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 139 9e-30
10dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic D... 139 9e-30
11dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic D... 139 9e-30
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 121 2e-24
13gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic ... 121 2e-24
14dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
15dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
16dbj|AP005782.3| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
17dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic D... 121 2e-24
18dbj|AK099813.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
19emb|AJ851434.1| Gallus gallus partial mRNA for hypothetical prot... 46 0.098
20ref|NM_105394.2| Arabidopsis thaliana unknown protein AT1G67250 ... 44 0.39
21gb|BT011933.1| Arabidopsis thaliana At1g67250 mRNA sequence 44 0.39
22gb|AY044313.1| Arabidopsis thaliana Unknown protein (F1N21.15) m... 44 0.39
23gb|AC092828.16| Homo sapiens 12 BAC RP11-282K24 (Roswell Park Ca... 44 0.39
24gb|BT003679.1| Arabidopsis thaliana At1g67250 mRNA, complete cds 44 0.39
25gb|AY086781.1| Arabidopsis thaliana clone 27632 mRNA, complete s... 44 0.39
26gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.39
27gb|AC002130.2|AC002130 Genomic sequence for Arabidopsis thaliana... 44 0.39
28dbj|AK117205.1| Arabidopsis thaliana At1g67250 mRNA for unknown ... 44 0.39
29dbj|AP006703.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 1.5
30gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 6.1
31gb|AC122941.3| Mus musculus BAC clone RP23-1E3 from chromosome 8... 40 6.1
32gb|AC135362.3| Mus musculus BAC clone RP23-286J13 from chromosom... 40 6.1
33gb|AC083890.4| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 6.1
34emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4,... 40 6.1
35dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
36dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
37dbj|AK119517.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
38dbj|AK100650.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
39dbj|AK100585.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
40dbj|AK064827.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
41dbj|AK061743.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
42dbj|AK061649.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
43gb|U07366.1|CAU07366 Candida albicans translation initiation fac... 40 6.1

>dbj|AK069830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030M09, full
           insert sequence
          Length = 778

 Score =  313 bits (158), Expect = 3e-82
 Identities = 272/310 (87%)
 Strand = Plus / Minus

                                                                       
Query: 134 aatcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccg 193
           |||||||||||||| ||||| |  |||||||| ||||  || |||||||||||||| |||
Sbjct: 494 aatcaattgaaactagggcaaacaggtccctttgacaaaccgaggcgaacctccattccg 435

                                                                       
Query: 194 tggtgcatgtccggtacgcgcaggctgtcagagtcttggggcaagttaaggtaatcttca 253
           ||||||||||| ||  | || | ||| ||||| ||||||||||||||||| |||||||||
Sbjct: 434 tggtgcatgtcgggagcacggaagctttcagaatcttggggcaagttaagataatcttca 375

                                                                       
Query: 254 aatccaaaatcatccaaggaacctgtcattgcctcatatcccagcatagatgatggcaat 313
           || ||||||||||| |||||||| |||| |||||||||||| ||||||||||| ||||||
Sbjct: 374 aacccaaaatcatctaaggaaccagtcagtgcctcatatcctagcatagatgacggcaat 315

                                                                       
Query: 314 gcacctgggggcctttggaacctggagaggatctgggcgtcgagatccttgcggatgttg 373
           ||||| ||||||||||||||| |||||||||| ||||| || ||||||||||||||||||
Sbjct: 314 gcaccagggggcctttggaacttggagaggatttgggcatcaagatccttgcggatgttg 255

                                                                       
Query: 374 aaggcggatccgtagatggcctcggtcccgaacttcttcttgtcgtcccagaacttggac 433
           |||||||||||||||||||| || |  |||||| ||||||||||  ||||||||||||  
Sbjct: 254 aaggcggatccgtagatggcttccgcgccgaacctcttcttgtccgcccagaacttggca 195

                     
Query: 434 tccttgtgga 443
           ||||||||||
Sbjct: 194 tccttgtgga 185



to top

>gb|AY105712.1| Zea mays PCO130616 mRNA sequence
          Length = 981

 Score =  303 bits (153), Expect = 3e-79
 Identities = 264/301 (87%)
 Strand = Plus / Minus

                                                                       
Query: 136 tcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccgtg 195
           |||| |||| || |||||||| |||||||||||||  ||||||||||||||||| |||||
Sbjct: 510 tcaactgaagctagggcagataggtcccttggacaaaccaaggcgaacctccattccgtg 451

                                                                       
Query: 196 gtgcatgtccggtacgcgcaggctgtcagagtcttggggcaagttaaggtaatcttcaaa 255
           ||||||||| |||   || |  |  ||||| ||||| |||| |||||| |||||||||||
Sbjct: 450 gtgcatgtcaggttgacggaaaccttcagaatcttgaggcatgttaagataatcttcaaa 391

                                                                       
Query: 256 tccaaaatcatccaaggaacctgtcattgcctcatatcccagcatagatgatggcaatgc 315
            ||||||||||| | ||||||||||| |||||||||||| |||| |||||||||||| ||
Sbjct: 390 accaaaatcatctagggaacctgtcagtgcctcatatccaagcagagatgatggcaaagc 331

                                                                       
Query: 316 acctgggggcctttggaacctggagaggatctgggcgtcgagatccttgcggatgttgaa 375
           ||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||
Sbjct: 330 accagggggcctttggaaccttgagaggatttgggcatcgagatccttgcggatgttcaa 271

                                                                       
Query: 376 ggcggatccgtagatggcctcggtcccgaacttcttcttgtcgtcccagaacttggactc 435
           ||||||||||||||||||||| ||||| ||||||||||||||  |||||||||||| |||
Sbjct: 270 ggcggatccgtagatggcctctgtcccaaacttcttcttgtccgcccagaacttggcctc 211

            
Query: 436 c 436
           |
Sbjct: 210 c 210



to top

>gb|AY104566.1| Zea mays PCO130617 mRNA sequence
          Length = 1029

 Score =  297 bits (150), Expect = 2e-77
 Identities = 264/302 (87%)
 Strand = Plus / Minus

                                                                       
Query: 136 tcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccgtg 195
           ||||||||| || || ||||| |||||||||||||  ||||||||||||||||| || ||
Sbjct: 777 tcaattgaagctaggacagataggtcccttggacaaaccaaggcgaacctccattccatg 718

                                                                       
Query: 196 gtgcatgtccggtacgcgcaggctgtcagagtcttggggcaagttaaggtaatcttcaaa 255
           ||||||||| |||   || |  |||||||| || || |||| |||||| |||||||||||
Sbjct: 717 gtgcatgtcaggttgacggaaactgtcagaatcatgaggcatgttaagataatcttcaaa 658

                                                                       
Query: 256 tccaaaatcatccaaggaacctgtcattgcctcatatcccagcatagatgatggcaatgc 315
           |||||||||||||| ||||||||||| |||||| ||||| |||| |||||| ||||| ||
Sbjct: 657 tccaaaatcatccagggaacctgtcagtgcctcgtatccaagcagagatgacggcaaagc 598

                                                                       
Query: 316 acctgggggcctttggaacctggagaggatctgggcgtcgagatccttgcggatgttgaa 375
           ||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||| 
Sbjct: 597 accagggggcctttggaacctggagaggatttgggcatcgagatccttgcggatgttgag 538

                                                                       
Query: 376 ggcggatccgtagatggcctcggtcccgaacttcttcttgtcgtcccagaacttggactc 435
           ||||||||| || ||||| || ||||||||||||||||||||  |||||||||||| |||
Sbjct: 537 ggcggatccatatatggcatctgtcccgaacttcttcttgtccgcccagaacttggtctc 478

             
Query: 436 ct 437
           ||
Sbjct: 477 ct 476



to top

>gb|BT016426.1| Zea mays clone Contig259 mRNA sequence
          Length = 643

 Score =  295 bits (149), Expect = 6e-77
 Identities = 263/301 (87%)
 Strand = Plus / Minus

                                                                       
Query: 136 tcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccgtg 195
           ||||||||| || || ||||| |||||||||||||  ||||||||||||||||| || ||
Sbjct: 488 tcaattgaagctaggacagataggtcccttggacaaaccaaggcgaacctccattccatg 429

                                                                       
Query: 196 gtgcatgtccggtacgcgcaggctgtcagagtcttggggcaagttaaggtaatcttcaaa 255
           ||||||||| |||   || |  |||||||| || || |||| |||||| |||||||||||
Sbjct: 428 gtgcatgtcaggttgacggaaactgtcagaatcatgaggcatgttaagataatcttcaaa 369

                                                                       
Query: 256 tccaaaatcatccaaggaacctgtcattgcctcatatcccagcatagatgatggcaatgc 315
           |||||||||||||| ||||||||||| |||||| ||||| |||| |||||| ||||| ||
Sbjct: 368 tccaaaatcatccagggaacctgtcagtgcctcgtatccaagcagagatgacggcaaagc 309

                                                                       
Query: 316 acctgggggcctttggaacctggagaggatctgggcgtcgagatccttgcggatgttgaa 375
           ||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||| 
Sbjct: 308 accagggggcctttggaacctggagaggatttgggcatcgagatccttgcggatgttgag 249

                                                                       
Query: 376 ggcggatccgtagatggcctcggtcccgaacttcttcttgtcgtcccagaacttggactc 435
           ||||||||| || ||||| || ||||||||||||||||||||  |||||||||||| |||
Sbjct: 248 ggcggatccatatatggcatctgtcccgaacttcttcttgtccgcccagaacttggtctc 189

            
Query: 436 c 436
           |
Sbjct: 188 c 188



to top

>ref|XM_463066.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 846

 Score =  270 bits (136), Expect = 4e-69
 Identities = 229/260 (88%)
 Strand = Plus / Minus

                                                                       
Query: 184 ctccatcccgtggtgcatgtccggtacgcgcaggctgtcagagtcttggggcaagttaag 243
           |||||| |||||||||||||| ||  |  | | ||||||||| |||||||||||||| ||
Sbjct: 378 ctccattccgtggtgcatgtctggagcatggaagctgtcagaatcttggggcaagttgag 319

                                                                       
Query: 244 gtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatcccagcataga 303
            ||||||||||| || ||||||||||||||||| ||||  ||||| ||||| ||||||||
Sbjct: 318 ataatcttcaaacccgaaatcatccaaggaaccagtcagcgcctcgtatcctagcataga 259

                                                                       
Query: 304 tgatggcaatgcacctgggggcctttggaacctggagaggatctgggcgtcgagatcctt 363
           ||||||||||||||| ||||||||||||||| |||||||||| ||||| |||||||||||
Sbjct: 258 tgatggcaatgcaccagggggcctttggaacttggagaggatttgggcatcgagatcctt 199

                                                                       
Query: 364 gcggatgttgaaggcggatccgtagatggcctcggtcccgaacttcttcttgtcgtccca 423
           |||||||||||| ||||||||||||||||| || | ||||||| ||||||| ||  ||||
Sbjct: 198 gcggatgttgaaagcggatccgtagatggcttccgccccgaacctcttcttatccgccca 139

                               
Query: 424 gaacttggactccttgtgga 443
           |||||||| |||||||||||
Sbjct: 138 gaacttggcctccttgtgga 119



to top

>dbj|AK072342.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052N08, full
           insert sequence
          Length = 3232

 Score =  252 bits (127), Expect = 9e-64
 Identities = 187/207 (90%)
 Strand = Plus / Minus

                                                                       
Query: 237 agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 296
           ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| |
Sbjct: 373 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 314

                                                                       
Query: 297 gcatagatgatggcaatgcacctgggggcctttggaacctggagaggatctgggcgtcga 356
           |||||||||| ||||||||||| ||||||||||||||| |||||||||| ||||| || |
Sbjct: 313 gcatagatgacggcaatgcaccagggggcctttggaacttggagaggatttgggcatcaa 254

                                                                       
Query: 357 gatccttgcggatgttgaaggcggatccgtagatggcctcggtcccgaacttcttcttgt 416
           ||||||||||||||||||||||||||||||||||||| || |  |||||| |||||||||
Sbjct: 253 gatccttgcggatgttgaaggcggatccgtagatggcttccgcgccgaacctcttcttgt 194

                                      
Query: 417 cgtcccagaacttggactccttgtgga 443
           |  |||||||||||| |||||||||||
Sbjct: 193 ccgcccagaacttggcctccttgtgga 167



to top

>dbj|AK072332.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038L20, full
           insert sequence
          Length = 4792

 Score =  252 bits (127), Expect = 9e-64
 Identities = 187/207 (90%)
 Strand = Plus / Minus

                                                                       
Query: 237 agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 296
           ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| |
Sbjct: 359 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 300

                                                                       
Query: 297 gcatagatgatggcaatgcacctgggggcctttggaacctggagaggatctgggcgtcga 356
           |||||||||| ||||||||||| ||||||||||||||| |||||||||| ||||| || |
Sbjct: 299 gcatagatgacggcaatgcaccagggggcctttggaacttggagaggatttgggcatcaa 240

                                                                       
Query: 357 gatccttgcggatgttgaaggcggatccgtagatggcctcggtcccgaacttcttcttgt 416
           ||||||||||||||||||||||||||||||||||||| || |  |||||| |||||||||
Sbjct: 239 gatccttgcggatgttgaaggcggatccgtagatggcttccgcgccgaacctcttcttgt 180

                                      
Query: 417 cgtcccagaacttggactccttgtgga 443
           |  |||||||||||| |||||||||||
Sbjct: 179 ccgcccagaacttggcctccttgtgga 153



to top

>dbj|AK067815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118P06, full
           insert sequence
          Length = 3020

 Score =  252 bits (127), Expect = 9e-64
 Identities = 187/207 (90%)
 Strand = Plus / Minus

                                                                       
Query: 237 agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 296
           ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| |
Sbjct: 358 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 299

                                                                       
Query: 297 gcatagatgatggcaatgcacctgggggcctttggaacctggagaggatctgggcgtcga 356
           |||||||||| ||||||||||| ||||||||||||||| |||||||||| ||||| || |
Sbjct: 298 gcatagatgacggcaatgcaccagggggcctttggaacttggagaggatttgggcatcaa 239

                                                                       
Query: 357 gatccttgcggatgttgaaggcggatccgtagatggcctcggtcccgaacttcttcttgt 416
           ||||||||||||||||||||||||||||||||||||| || |  |||||| |||||||||
Sbjct: 238 gatccttgcggatgttgaaggcggatccgtagatggcttccgcgccgaacctcttcttgt 179

                                      
Query: 417 cgtcccagaacttggactccttgtgga 443
           |  |||||||||||| |||||||||||
Sbjct: 178 ccgcccagaacttggcctccttgtgga 152



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  139 bits (70), Expect = 9e-30
 Identities = 94/102 (92%)
 Strand = Plus / Plus

                                                                            
Query: 237      agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 296
                ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| |
Sbjct: 34172866 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 34172925

                                                          
Query: 297      gcatagatgatggcaatgcacctgggggcctttggaacctgg 338
                |||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 34172926 gcatagatgacggcaatgcaccagggggcctttggaacctgg 34172967



 Score =  139 bits (70), Expect = 9e-30
 Identities = 94/102 (92%)
 Strand = Plus / Plus

                                                                            
Query: 237      agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 296
                ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| |
Sbjct: 34143149 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 34143208

                                                          
Query: 297      gcatagatgatggcaatgcacctgggggcctttggaacctgg 338
                |||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 34143209 gcatagatgacggcaatgcaccagggggcctttggaacctgg 34143250



 Score =  139 bits (70), Expect = 9e-30
 Identities = 94/102 (92%)
 Strand = Plus / Plus

                                                                            
Query: 237      agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 296
                ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| |
Sbjct: 34118597 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 34118656

                                                          
Query: 297      gcatagatgatggcaatgcacctgggggcctttggaacctgg 338
                |||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 34118657 gcatagatgacggcaatgcaccagggggcctttggaacctgg 34118698



 Score =  139 bits (70), Expect = 9e-30
 Identities = 94/102 (92%)
 Strand = Plus / Plus

                                                                            
Query: 237      agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 296
                ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| |
Sbjct: 34095410 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 34095469

                                                          
Query: 297      gcatagatgatggcaatgcacctgggggcctttggaacctgg 338
                |||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 34095470 gcatagatgacggcaatgcaccagggggcctttggaacctgg 34095511



 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                            
Query: 336      tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 395
                |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 34173720 tggagaggatttgggcatcaagatccttgcggatgttgaaggcggatccgtagatggctt 34173779

                                                          
Query: 396      cggtcccgaacttcttcttgtcgtcccagaacttggactcct 437
                | |  |||||| ||||||||||  |||||||||||| |||||
Sbjct: 34173780 ccgcgccgaacctcttcttgtccgcccagaacttggcctcct 34173821



 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                            
Query: 336      tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 395
                |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 34144003 tggagaggatttgggcatcaagatccttgcggatgttgaaggcggatccgtagatggctt 34144062

                                                          
Query: 396      cggtcccgaacttcttcttgtcgtcccagaacttggactcct 437
                | |  |||||| ||||||||||  |||||||||||| |||||
Sbjct: 34144063 ccgcgccgaacctcttcttgtccgcccagaacttggcctcct 34144104



 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                            
Query: 336      tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 395
                |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 34119451 tggagaggatttgggcatcaagatccttgcggatgttgaaggcggatccgtagatggctt 34119510

                                                          
Query: 396      cggtcccgaacttcttcttgtcgtcccagaacttggactcct 437
                | |  |||||| ||||||||||  |||||||||||| |||||
Sbjct: 34119511 ccgcgccgaacctcttcttgtccgcccagaacttggcctcct 34119552



 Score =  111 bits (56), Expect = 2e-21
 Identities = 86/96 (89%)
 Strand = Plus / Plus

                                                                            
Query: 336      tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 395
                |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 34096277 tggagaggatttgggcatcaagatccttgcggatgttgaaggcggatccgtagatggctt 34096336

                                                    
Query: 396      cggtcccgaacttcttcttgtcgtcccagaacttgg 431
                | |  |||||| ||||||||||  ||||||||||||
Sbjct: 34096337 ccgcgccgaacctcttcttgtccgcccagaacttgg 34096372



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                            
Query: 134      aatcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccg 193
                |||||||||||||| ||||| |  |||||||| ||||  || |||||||||||||| |||
Sbjct: 34094615 aatcaattgaaactagggcaaacaggtccctttgacaaaccgaggcgaacctccattccg 34094674

                           
Query: 194      tggtgcatgtc 204
                |||||||||||
Sbjct: 34094675 tggtgcatgtc 34094685



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 397      ggtcccgaacttcttcttgt 416
                ||||||||||||||||||||
Sbjct: 27264326 ggtcccgaacttcttcttgt 27264307



to top

>dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0032L17
          Length = 165808

 Score =  139 bits (70), Expect = 9e-30
 Identities = 94/102 (92%)
 Strand = Plus / Plus

                                                                          
Query: 237    agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 296
              ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| |
Sbjct: 100380 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 100439

                                                        
Query: 297    gcatagatgatggcaatgcacctgggggcctttggaacctgg 338
              |||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 100440 gcatagatgacggcaatgcaccagggggcctttggaacctgg 100481



 Score =  139 bits (70), Expect = 9e-30
 Identities = 94/102 (92%)
 Strand = Plus / Plus

                                                                         
Query: 237   agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 296
             ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| |
Sbjct: 70663 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 70722

                                                       
Query: 297   gcatagatgatggcaatgcacctgggggcctttggaacctgg 338
             |||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 70723 gcatagatgacggcaatgcaccagggggcctttggaacctgg 70764



 Score =  139 bits (70), Expect = 9e-30
 Identities = 94/102 (92%)
 Strand = Plus / Plus

                                                                         
Query: 237   agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 296
             ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| |
Sbjct: 46111 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 46170

                                                       
Query: 297   gcatagatgatggcaatgcacctgggggcctttggaacctgg 338
             |||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 46171 gcatagatgacggcaatgcaccagggggcctttggaacctgg 46212



 Score =  139 bits (70), Expect = 9e-30
 Identities = 94/102 (92%)
 Strand = Plus / Plus

                                                                         
Query: 237   agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 296
             ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| |
Sbjct: 22924 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 22983

                                                       
Query: 297   gcatagatgatggcaatgcacctgggggcctttggaacctgg 338
             |||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 22984 gcatagatgacggcaatgcaccagggggcctttggaacctgg 23025



 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                          
Query: 336    tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 395
              |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 101234 tggagaggatttgggcatcaagatccttgcggatgttgaaggcggatccgtagatggctt 101293

                                                        
Query: 396    cggtcccgaacttcttcttgtcgtcccagaacttggactcct 437
              | |  |||||| ||||||||||  |||||||||||| |||||
Sbjct: 101294 ccgcgccgaacctcttcttgtccgcccagaacttggcctcct 101335



 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                         
Query: 336   tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 395
             |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 71517 tggagaggatttgggcatcaagatccttgcggatgttgaaggcggatccgtagatggctt 71576

                                                       
Query: 396   cggtcccgaacttcttcttgtcgtcccagaacttggactcct 437
             | |  |||||| ||||||||||  |||||||||||| |||||
Sbjct: 71577 ccgcgccgaacctcttcttgtccgcccagaacttggcctcct 71618



 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                         
Query: 336   tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 395
             |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 46965 tggagaggatttgggcatcaagatccttgcggatgttgaaggcggatccgtagatggctt 47024

                                                       
Query: 396   cggtcccgaacttcttcttgtcgtcccagaacttggactcct 437
             | |  |||||| ||||||||||  |||||||||||| |||||
Sbjct: 47025 ccgcgccgaacctcttcttgtccgcccagaacttggcctcct 47066



 Score =  111 bits (56), Expect = 2e-21
 Identities = 86/96 (89%)
 Strand = Plus / Plus

                                                                         
Query: 336   tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 395
             |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 23791 tggagaggatttgggcatcaagatccttgcggatgttgaaggcggatccgtagatggctt 23850

                                                 
Query: 396   cggtcccgaacttcttcttgtcgtcccagaacttgg 431
             | |  |||||| ||||||||||  ||||||||||||
Sbjct: 23851 ccgcgccgaacctcttcttgtccgcccagaacttgg 23886



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 62/71 (87%)
 Strand = Plus / Plus

                                                                         
Query: 134   aatcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccg 193
             |||||||||||||| ||||| |  |||||||| ||||  || |||||||||||||| |||
Sbjct: 22129 aatcaattgaaactagggcaaacaggtccctttgacaaaccgaggcgaacctccattccg 22188

                        
Query: 194   tggtgcatgtc 204
             |||||||||||
Sbjct: 22189 tggtgcatgtc 22199



to top

>dbj|AP005056.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0689B12
          Length = 154745

 Score =  139 bits (70), Expect = 9e-30
 Identities = 94/102 (92%)
 Strand = Plus / Plus

                                                                        
Query: 237  agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatccca 296
            ||||||| ||||||||||| ||||||||||| |||||||| |||| |||||||||||| |
Sbjct: 8139 agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatccta 8198

                                                      
Query: 297  gcatagatgatggcaatgcacctgggggcctttggaacctgg 338
            |||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 8199 gcatagatgacggcaatgcaccagggggcctttggaacctgg 8240



 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Plus

                                                                        
Query: 336  tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 395
            |||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 8993 tggagaggatttgggcatcaagatccttgcggatgttgaaggcggatccgtagatggctt 9052

                                                      
Query: 396  cggtcccgaacttcttcttgtcgtcccagaacttggactcct 437
            | |  |||||| ||||||||||  |||||||||||| |||||
Sbjct: 9053 ccgcgccgaacctcttcttgtccgcccagaacttggcctcct 9094



to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  121 bits (61), Expect = 2e-24
 Identities = 85/93 (91%)
 Strand = Plus / Minus

                                                                            
Query: 245      taatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatcccagcatagat 304
                ||||||||||| || ||||||||||||||||| ||||  ||||| ||||| |||||||||
Sbjct: 21300317 taatcttcaaacccgaaatcatccaaggaaccagtcagcgcctcgtatcctagcatagat 21300258

                                                 
Query: 305      gatggcaatgcacctgggggcctttggaacctg 337
                |||||||||||||| ||||||||||||||||||
Sbjct: 21300257 gatggcaatgcaccagggggcctttggaacctg 21300225



 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                            
Query: 336      tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 395
                |||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 21298449 tggagaggatttgggcatcgagatccttgcggatgttgaaagcggatccgtagatggctt 21298390

                                                          
Query: 396      cggtcccgaacttcttcttgtcgtcccagaacttggactcct 437
                | | ||||||| ||||||| ||  |||||||||||| |||||
Sbjct: 21298389 ccgccccgaacctcttcttatccgcccagaacttggcctcct 21298348



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                            
Query: 134      aatcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccg 193
                |||||||||||||| ||||| || |||||||| ||||  ||||||||||||||||| |||
Sbjct: 21301089 aatcaattgaaactagggcaaatcggtccctttgacaaaccaaggcgaacctccattccg 21301030

                           
Query: 194      tggtgcatgtc 204
                |||||||||||
Sbjct: 21301029 tggtgcatgtc 21301019



to top

>gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic sequence, complete
              sequence
          Length = 174910

 Score =  121 bits (61), Expect = 2e-24
 Identities = 85/93 (91%)
 Strand = Plus / Minus

                                                                          
Query: 245    taatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatcccagcatagat 304
              ||||||||||| || ||||||||||||||||| ||||  ||||| ||||| |||||||||
Sbjct: 156232 taatcttcaaacccgaaatcatccaaggaaccagtcagcgcctcgtatcctagcatagat 156173

                                               
Query: 305    gatggcaatgcacctgggggcctttggaacctg 337
              |||||||||||||| ||||||||||||||||||
Sbjct: 156172 gatggcaatgcaccagggggcctttggaacctg 156140



 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                          
Query: 336    tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 395
              |||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 154364 tggagaggatttgggcatcgagatccttgcggatgttgaaagcggatccgtagatggctt 154305

                                                        
Query: 396    cggtcccgaacttcttcttgtcgtcccagaacttggactcct 437
              | | ||||||| ||||||| ||  |||||||||||| |||||
Sbjct: 154304 ccgccccgaacctcttcttatccgcccagaacttggcctcct 154263



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                          
Query: 134    aatcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccg 193
              |||||||||||||| ||||| || |||||||| ||||  ||||||||||||||||| |||
Sbjct: 157004 aatcaattgaaactagggcaaatcggtccctttgacaaaccaaggcgaacctccattccg 156945

                         
Query: 194    tggtgcatgtc 204
              |||||||||||
Sbjct: 156944 tggtgcatgtc 156934



to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  121 bits (61), Expect = 2e-24
 Identities = 85/93 (91%)
 Strand = Plus / Minus

                                                                           
Query: 245     taatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatcccagcatagat 304
               ||||||||||| || ||||||||||||||||| ||||  ||||| ||||| |||||||||
Sbjct: 8584417 taatcttcaaacccgaaatcatccaaggaaccagtcagcgcctcgtatcctagcatagat 8584358

                                                
Query: 305     gatggcaatgcacctgggggcctttggaacctg 337
               |||||||||||||| ||||||||||||||||||
Sbjct: 8584357 gatggcaatgcaccagggggcctttggaacctg 8584325



 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                           
Query: 336     tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 395
               |||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 8582551 tggagaggatttgggcatcgagatccttgcggatgttgaaagcggatccgtagatggctt 8582492

                                                         
Query: 396     cggtcccgaacttcttcttgtcgtcccagaacttggactcct 437
               | | ||||||| ||||||| ||  |||||||||||| |||||
Sbjct: 8582491 ccgccccgaacctcttcttatccgcccagaacttggcctcct 8582450



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                           
Query: 134     aatcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccg 193
               |||||||||||||| ||||| || |||||||| ||||  |||||| |||||||||| |||
Sbjct: 8585191 aatcaattgaaactagggcaaatcggtccctttgacaaaccaaggagaacctccattccg 8585132

                          
Query: 194     tggtgcatgtc 204
               |||||||||||
Sbjct: 8585131 tggtgcatgtc 8585121



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  121 bits (61), Expect = 2e-24
 Identities = 85/93 (91%)
 Strand = Plus / Minus

                                                                            
Query: 245      taatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatcccagcatagat 304
                ||||||||||| || ||||||||||||||||| ||||  ||||| ||||| |||||||||
Sbjct: 21293346 taatcttcaaacccgaaatcatccaaggaaccagtcagcgcctcgtatcctagcatagat 21293287

                                                 
Query: 305      gatggcaatgcacctgggggcctttggaacctg 337
                |||||||||||||| ||||||||||||||||||
Sbjct: 21293286 gatggcaatgcaccagggggcctttggaacctg 21293254



 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                            
Query: 336      tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 395
                |||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 21291478 tggagaggatttgggcatcgagatccttgcggatgttgaaagcggatccgtagatggctt 21291419

                                                          
Query: 396      cggtcccgaacttcttcttgtcgtcccagaacttggactcct 437
                | | ||||||| ||||||| ||  |||||||||||| |||||
Sbjct: 21291418 ccgccccgaacctcttcttatccgcccagaacttggcctcct 21291377



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Minus

                                                                            
Query: 134      aatcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccg 193
                |||||||||||||| ||||| || |||||||| ||||  ||||||||||||||||| |||
Sbjct: 21294118 aatcaattgaaactagggcaaatcggtccctttgacaaaccaaggcgaacctccattccg 21294059

                           
Query: 194      tggtgcatgtc 204
                |||||||||||
Sbjct: 21294058 tggtgcatgtc 21294048



to top

>dbj|AP005782.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0079G12
          Length = 139796

 Score =  121 bits (61), Expect = 2e-24
 Identities = 85/93 (91%)
 Strand = Plus / Minus

                                                                          
Query: 245    taatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatcccagcatagat 304
              ||||||||||| || ||||||||||||||||| ||||  ||||| ||||| |||||||||
Sbjct: 105627 taatcttcaaacccgaaatcatccaaggaaccagtcagcgcctcgtatcctagcatagat 105568

                                               
Query: 305    gatggcaatgcacctgggggcctttggaacctg 337
              |||||||||||||| ||||||||||||||||||
Sbjct: 105567 gatggcaatgcaccagggggcctttggaacctg 105535



 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                          
Query: 336    tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 395
              |||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 103761 tggagaggatttgggcatcgagatccttgcggatgttgaaagcggatccgtagatggctt 103702

                                                        
Query: 396    cggtcccgaacttcttcttgtcgtcccagaacttggactcct 437
              | | ||||||| ||||||| ||  |||||||||||| |||||
Sbjct: 103701 ccgccccgaacctcttcttatccgcccagaacttggcctcct 103660



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                          
Query: 134    aatcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccg 193
              |||||||||||||| ||||| || |||||||| ||||  |||||| |||||||||| |||
Sbjct: 106401 aatcaattgaaactagggcaaatcggtccctttgacaaaccaaggagaacctccattccg 106342

                         
Query: 194    tggtgcatgtc 204
              |||||||||||
Sbjct: 106341 tggtgcatgtc 106331



to top

>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0057D11
          Length = 190790

 Score =  121 bits (61), Expect = 2e-24
 Identities = 85/93 (91%)
 Strand = Plus / Minus

                                                                         
Query: 245   taatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatcccagcatagat 304
             ||||||||||| || ||||||||||||||||| ||||  ||||| ||||| |||||||||
Sbjct: 14213 taatcttcaaacccgaaatcatccaaggaaccagtcagcgcctcgtatcctagcatagat 14154

                                              
Query: 305   gatggcaatgcacctgggggcctttggaacctg 337
             |||||||||||||| ||||||||||||||||||
Sbjct: 14153 gatggcaatgcaccagggggcctttggaacctg 14121



 Score =  115 bits (58), Expect = 1e-22
 Identities = 91/102 (89%)
 Strand = Plus / Minus

                                                                         
Query: 336   tggagaggatctgggcgtcgagatccttgcggatgttgaaggcggatccgtagatggcct 395
             |||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 12347 tggagaggatttgggcatcgagatccttgcggatgttgaaagcggatccgtagatggctt 12288

                                                       
Query: 396   cggtcccgaacttcttcttgtcgtcccagaacttggactcct 437
             | | ||||||| ||||||| ||  |||||||||||| |||||
Sbjct: 12287 ccgccccgaacctcttcttatccgcccagaacttggcctcct 12246



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                         
Query: 134   aatcaattgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccg 193
             |||||||||||||| ||||| || |||||||| ||||  |||||| |||||||||| |||
Sbjct: 14987 aatcaattgaaactagggcaaatcggtccctttgacaaaccaaggagaacctccattccg 14928

                        
Query: 194   tggtgcatgtc 204
             |||||||||||
Sbjct: 14927 tggtgcatgtc 14917



to top

>dbj|AK099813.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099K24, full
           insert sequence
          Length = 2648

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                     
Query: 237 agttaaggtaatcttcaaatccaaaatcatccaaggaacctgtcattgcctcatatcc 294
           ||||||| ||||||||||| ||||||||||| |||||||| |||| ||||||||||||
Sbjct: 61  agttaagataatcttcaaacccaaaatcatctaaggaaccagtcagtgcctcatatcc 4



to top

>emb|AJ851434.1| Gallus gallus partial mRNA for hypothetical protein, clone 2l15
          Length = 2918

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 245 taatcttcaaatccaaaatcatc 267
           |||||||||||||||||||||||
Sbjct: 279 taatcttcaaatccaaaatcatc 257



to top

>ref|NM_105394.2| Arabidopsis thaliana unknown protein AT1G67250 mRNA, complete cds
          Length = 677

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 141 tgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccgtggtg 198
           ||||||| ||| | || |||||||| || | |||||| ||||| ||||||||||||||
Sbjct: 506 tgaaacttgggtaaatcggtccctttgagatgccaagacgaacttccatcccgtggtg 449



to top

>gb|BT011933.1| Arabidopsis thaliana At1g67250 mRNA sequence
          Length = 423

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 141 tgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccgtggtg 198
           ||||||| ||| | || |||||||| || | |||||| ||||| ||||||||||||||
Sbjct: 418 tgaaacttgggtaaatcggtccctttgagatgccaagacgaacttccatcccgtggtg 361



to top

>gb|AY044313.1| Arabidopsis thaliana Unknown protein (F1N21.15) mRNA, complete cds
          Length = 474

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 141 tgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccgtggtg 198
           ||||||| ||| | || |||||||| || | |||||| ||||| ||||||||||||||
Sbjct: 421 tgaaacttgggtaaatcggtccctttgagatgccaagacgaacttccatcccgtggtg 364



to top

>gb|AC092828.16| Homo sapiens 12 BAC RP11-282K24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 127836

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 41     ttctcatgtttcacaaatccat 62
              ||||||||||||||||||||||
Sbjct: 101925 ttctcatgtttcacaaatccat 101904



to top

>gb|BT003679.1| Arabidopsis thaliana At1g67250 mRNA, complete cds
          Length = 426

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 141 tgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccgtggtg 198
           ||||||| ||| | || |||||||| || | |||||| ||||| ||||||||||||||
Sbjct: 421 tgaaacttgggtaaatcggtccctttgagatgccaagacgaacttccatcccgtggtg 364



to top

>gb|AY086781.1| Arabidopsis thaliana clone 27632 mRNA, complete sequence
          Length = 604

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 141 tgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccgtggtg 198
           ||||||| ||| | || |||||||| || | |||||| ||||| ||||||||||||||
Sbjct: 489 tgaaacttgggtaaatcggtcccttcgagatgccaagacgaacttccatcccgtggtg 432



to top

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 349     ggcgtcgagatccttgcggatg 370
               ||||||||||||||||||||||
Sbjct: 5003984 ggcgtcgagatccttgcggatg 5004005



to top

>gb|AC002130.2|AC002130 Genomic sequence for Arabidopsis thaliana BAC F1N21 from chromosome I,
             complete sequence
          Length = 114738

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                       
Query: 141   tgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccgtggtg 198
             ||||||| ||| | || |||||||| || | |||||| ||||| ||||||||||||||
Sbjct: 26684 tgaaacttgggtaaatcggtccctttgagatgccaagacgaacttccatcccgtggtg 26741



to top

>dbj|AK117205.1| Arabidopsis thaliana At1g67250 mRNA for unknown protein, complete
           cds, clone: RAFL16-75-L12
          Length = 583

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 141 tgaaactggggcagatgggtcccttggacaggccaaggcgaacctccatcccgtggtg 198
           ||||||| ||| | || |||||||| || | |||||| ||||| ||||||||||||||
Sbjct: 501 tgaaacttgggtaaatcggtccctttgagatgccaagacgaacttccatcccgtggtg 444



to top

>dbj|AP006703.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01O03, TM0588b,
             complete sequence
          Length = 45450

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 173   ccaaggcgaacctccatcccgtggtgcatgtcc 205
             ||||||||||| |||||||| || |||||||||
Sbjct: 33330 ccaaggcgaacttccatcccatgatgcatgtcc 33298



to top

>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 248     tcttcaaatccaaaatcatc 267
               ||||||||||||||||||||
Sbjct: 1149724 tcttcaaatccaaaatcatc 1149743



to top

>gb|AC122941.3| Mus musculus BAC clone RP23-1E3 from chromosome 8, complete sequence
          Length = 244220

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 247    atcttcaaatccaaaatcat 266
              ||||||||||||||||||||
Sbjct: 201817 atcttcaaatccaaaatcat 201798



to top

>gb|AC135362.3| Mus musculus BAC clone RP23-286J13 from chromosome 8, complete sequence
          Length = 173357

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   atcttcaaatccaaaatcat 266
             ||||||||||||||||||||
Sbjct: 51656 atcttcaaatccaaaatcat 51675



to top

>gb|AC083890.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-284P20, complete
             sequence
          Length = 203967

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 325   cctttggaacctggagagga 344
             ||||||||||||||||||||
Sbjct: 21772 cctttggaacctggagagga 21791



to top

>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11,
              complete sequence
          Length = 147806

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 357    gatccttgcggatgttgaag 376
              ||||||||||||||||||||
Sbjct: 113776 gatccttgcggatgttgaag 113795



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 357      gatccttgcggatgttgaag 376
                ||||||||||||||||||||
Sbjct: 28106551 gatccttgcggatgttgaag 28106570



to top

>dbj|AP005055.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0684A08
          Length = 137841

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 397    ggtcccgaacttcttcttgt 416
              ||||||||||||||||||||
Sbjct: 114997 ggtcccgaacttcttcttgt 114978



to top

>dbj|AK119517.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-C05, full
           insert sequence
          Length = 2055

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ggtcccgaacttcttcttgt 416
           ||||||||||||||||||||
Sbjct: 991 ggtcccgaacttcttcttgt 972



to top

>dbj|AK100650.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111D06, full
           insert sequence
          Length = 2089

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ggtcccgaacttcttcttgt 416
           ||||||||||||||||||||
Sbjct: 988 ggtcccgaacttcttcttgt 969



to top

>dbj|AK100585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106B08, full
            insert sequence
          Length = 2977

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 397  ggtcccgaacttcttcttgt 416
            ||||||||||||||||||||
Sbjct: 2049 ggtcccgaacttcttcttgt 2030



to top

>dbj|AK064827.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F07, full
           insert sequence
          Length = 1984

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ggtcccgaacttcttcttgt 416
           ||||||||||||||||||||
Sbjct: 987 ggtcccgaacttcttcttgt 968



to top

>dbj|AK061743.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-F02, full
           insert sequence
          Length = 1756

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ggtcccgaacttcttcttgt 416
           ||||||||||||||||||||
Sbjct: 991 ggtcccgaacttcttcttgt 972



to top

>dbj|AK061649.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C02, full
           insert sequence
          Length = 1697

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 397 ggtcccgaacttcttcttgt 416
           ||||||||||||||||||||
Sbjct: 614 ggtcccgaacttcttcttgt 595



to top

>gb|U07366.1|CAU07366 Candida albicans translation initiation factor eIF-5A (TIF51) gene,
            complete cds
          Length = 1993

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 120  taatacatgggtggaatcaa 139
            ||||||||||||||||||||
Sbjct: 986  taatacatgggtggaatcaa 1005


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,390,844
Number of Sequences: 3902068
Number of extensions: 3390844
Number of successful extensions: 59699
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59516
Number of HSP's gapped (non-prelim): 180
length of query: 451
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 429
effective length of database: 17,147,199,772
effective search space: 7356148702188
effective search space used: 7356148702188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top