ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd21c14 |
|---|---|
| Clone Library Name | barley_pub |
>SMC2_MOUSE (Q8CG48) Structural maintenance of chromosome 2-like 1 protein| (Chromosome-associated protein E) (XCAP-E homolog) (FGF-inducible protein 16) Length = 1191 Score = 34.3 bits (77), Expect = 0.33 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 8/78 (10%) Frame = -1 Query: 593 VKSGDADGYPKTEDELADEETLQRNLDRAIREEDYARAA------KIRDDLHVLHE--DT 438 V + + + LA EET ++ L ++ E+ A AA KI D LH L E + Sbjct: 309 VNTKSQSAFDLKKKNLASEETKRKELQNSMAEDSKALAAKEKEVKKITDGLHGLQEASNK 368 Query: 437 EASVLAANTRFYNAFKNG 384 +A LAA + +NA G Sbjct: 369 DAEALAAAQQHFNAVSAG 386
>SYC_STAES (Q8CTU1) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 466 Score = 32.3 bits (72), Expect = 1.3 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 8/71 (11%) Frame = -1 Query: 614 NRSRICHVKSGDADGYP---KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL--- 459 NR + + D G P K +EL DE E L + A + +D+ARA +IRD L Sbjct: 391 NRFKEVYSIFSDVLGVPLKSKETEELLDEDIEQLIEERNEARKNKDFARADEIRDMLKAR 450 Query: 458 HVLHEDTEASV 426 H++ EDT V Sbjct: 451 HIILEDTPQGV 461
>SYC_STAEQ (Q5HRM3) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 466 Score = 32.3 bits (72), Expect = 1.3 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 8/71 (11%) Frame = -1 Query: 614 NRSRICHVKSGDADGYP---KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL--- 459 NR + + D G P K +EL DE E L + A + +D+ARA +IRD L Sbjct: 391 NRFKEVYSIFSDVLGVPLKSKETEELLDEDIEQLIEERNEARKNKDFARADEIRDMLKAR 450 Query: 458 HVLHEDTEASV 426 H++ EDT V Sbjct: 451 HIILEDTPQGV 461
>GIDRP_HUMAN (Q7Z5L2) Growth inhibition and differentiation-related protein 88| (Putative mitochondrial space protein 32.1) Length = 792 Score = 32.3 bits (72), Expect = 1.3 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Frame = -1 Query: 581 DADGYPKTEDELADEETLQRNLDRAIREEDYARAAKIRDDLHVLHEDTEASVLAANTRFY 402 D D P T ++ E+ + + E + D+LHV HE + +VLA T Sbjct: 304 DTDSIPATMGHISLSESTNDTVSPVMIRE-CEKNDSTADELHVKHEPPDTAVLAHETHRD 362 Query: 401 NAFKN-GDFT 375 + FKN GD T Sbjct: 363 SGFKNVGDIT 372
>UVRC_TREPA (O83485) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 691 Score = 31.6 bits (70), Expect = 2.1 Identities = 13/36 (36%), Positives = 24/36 (66%) Frame = -1 Query: 530 LQRNLDRAIREEDYARAAKIRDDLHVLHEDTEASVL 423 L++ + RA+R+E + AA+IRDD+ + T S++ Sbjct: 210 LEKRMKRAVRQEAFEAAARIRDDIQAIRCITHKSLV 245
>SYS_PROMA (Q7VAZ8) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 425 Score = 31.2 bits (69), Expect = 2.8 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = -1 Query: 569 YPKTEDELADEETLQ-RNLDRAIREEDYARAAKIRDDLHVLHEDTEASVLAANTRFYNAF 393 Y + D + + LQ RN ++ E Y +I ++L +L DTE SV A +RF F Sbjct: 113 YSECPDGKDENDNLQIRNWGNPLKGEGYKEHWEIAEELGLL--DTEKSVRIAKSRFVTLF 170 Query: 392 KNG 384 +G Sbjct: 171 NHG 173
>UVRC_STRCO (Q9Z512) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 728 Score = 31.2 bits (69), Expect = 2.8 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = -1 Query: 530 LQRNLDRAIREEDYARAAKIRDDLHVLHEDTEASVL 423 L+R + A E +Y RAA++RDD+ L + E S + Sbjct: 214 LERQMAEAAEEMEYERAARLRDDIGALKKAMEKSAV 249
>UVRC_MYCLE (Q9CCP1) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 647 Score = 31.2 bits (69), Expect = 2.8 Identities = 18/55 (32%), Positives = 25/55 (45%) Frame = -1 Query: 599 CHVKSGDADGYPKTEDELADEETLQRNLDRAIREEDYARAAKIRDDLHVLHEDTE 435 C SG D Y + L+R + A + D+ RAA++RDDL L E Sbjct: 200 CDFLSGKTDRYARD---------LERKMSAAAEQLDFERAARLRDDLFALKRAME 245
>SYC_STAAW (Q8NXY7) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 466 Score = 30.8 bits (68), Expect = 3.6 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = -1 Query: 563 KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL---HVLHEDTEASV 426 K DEL DE E L + A + +D+ARA +IRD L +++ EDT V Sbjct: 411 KNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGV 461
>SYC_STAAS (Q6GBV8) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 466 Score = 30.8 bits (68), Expect = 3.6 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = -1 Query: 563 KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL---HVLHEDTEASV 426 K DEL DE E L + A + +D+ARA +IRD L +++ EDT V Sbjct: 411 KNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGV 461
>SYC_STAAN (Q99W73) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 466 Score = 30.8 bits (68), Expect = 3.6 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = -1 Query: 563 KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL---HVLHEDTEASV 426 K DEL DE E L + A + +D+ARA +IRD L +++ EDT V Sbjct: 411 KNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGV 461
>SYC_STAAM (Q932G0) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 466 Score = 30.8 bits (68), Expect = 3.6 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = -1 Query: 563 KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL---HVLHEDTEASV 426 K DEL DE E L + A + +D+ARA +IRD L +++ EDT V Sbjct: 411 KNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGV 461
>SYC_STAAC (Q5HIE5) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 466 Score = 30.8 bits (68), Expect = 3.6 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = -1 Query: 563 KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL---HVLHEDTEASV 426 K DEL DE E L + A + +D+ARA +IRD L +++ EDT V Sbjct: 411 KNADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGV 461
>VE2_HPV21 (P50767) Regulatory protein E2| Length = 503 Score = 30.4 bits (67), Expect = 4.8 Identities = 13/43 (30%), Positives = 25/43 (58%) Frame = -2 Query: 640 GFKLQPPTSTDPEFAMLKVGMLMAIQKLKTS*LTKKPFSVIWT 512 G++ PP + A +GM++ +Q L+ S K+P+S++ T Sbjct: 55 GYQYVPPLAVSESRAKQAIGMMLQLQSLQKSEYAKEPWSLVDT 97
>SYC_STAAR (Q6GJD9) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 466 Score = 30.4 bits (67), Expect = 4.8 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 5/51 (9%) Frame = -1 Query: 563 KTEDELADE--ETLQRNLDRAIREEDYARAAKIRDDL---HVLHEDTEASV 426 K DEL DE E L + A + +D+ARA +IRD L +++ EDT V Sbjct: 411 KKADELLDEDVEKLIEERNEARKNKDFARADEIRDMLKSQNIILEDTPQGV 461
>SYC_GEOKA (Q5L429) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 466 Score = 30.4 bits (67), Expect = 4.8 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 5/53 (9%) Frame = -1 Query: 581 DADGYPKTEDELADEE--TLQRNLDRAIREEDYARAAKIRDDL---HVLHEDT 438 D G +DEL DEE L + + A + D+A A +IRD+L +++ EDT Sbjct: 405 DVLGLTLKQDELLDEEIEALIQKRNEARKNRDFALADRIRDELRAKNIILEDT 457
>UVRC_MYCTU (P67426) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 646 Score = 30.0 bits (66), Expect = 6.2 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 3/102 (2%) Frame = -1 Query: 599 CHVKSGDADGYPKTEDELADEETLQRNLDRAIREEDYARAAKIRDDLHVLHE--DTEASV 426 C SG D + + L++ ++ A + D+ RAA++RDDL L + +A V Sbjct: 200 CDFLSGKTDRFARA---------LEQQMNAAAEQLDFERAARLRDDLSALKRAMEKQAVV 250 Query: 425 LAANT-RFYNAFKNGDFTAMNSIWAKGDYVYVVHPGAGRISG 303 L T AF + + A V V H GR+ G Sbjct: 251 LGDGTDADVVAFADDELEAA---------VQVFHVRGGRVRG 283
>UVRC_MYCBO (P67427) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 646 Score = 30.0 bits (66), Expect = 6.2 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 3/102 (2%) Frame = -1 Query: 599 CHVKSGDADGYPKTEDELADEETLQRNLDRAIREEDYARAAKIRDDLHVLHE--DTEASV 426 C SG D + + L++ ++ A + D+ RAA++RDDL L + +A V Sbjct: 200 CDFLSGKTDRFARA---------LEQQMNAAAEQLDFERAARLRDDLSALKRAMEKQAVV 250 Query: 425 LAANT-RFYNAFKNGDFTAMNSIWAKGDYVYVVHPGAGRISG 303 L T AF + + A V V H GR+ G Sbjct: 251 LGDGTDADVVAFADDELEAA---------VQVFHVRGGRVRG 283
>C12E1_DROME (Q9VGZ0) Probable cytochrome P450 12e1, mitochondrial precursor (EC| 1.14.-.-) (CYPXIIE1) Length = 514 Score = 30.0 bits (66), Expect = 6.2 Identities = 15/48 (31%), Positives = 24/48 (50%) Frame = -1 Query: 353 KGDYVYVVHPGAGRISGYDVVLQSWEMVCNADYEFPLNIELKNIEVHV 210 +G +Y + PG R +DVVL + +V D N ++ N+E V Sbjct: 373 EGIRMYPIGPGTLRRMPHDVVLSGYRVVAGTDVGIAANYQMANMEQFV 420
>IF2_DESDG (Q30WJ0) Translation initiation factor IF-2| Length = 984 Score = 30.0 bits (66), Expect = 6.2 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 9/107 (8%) Frame = -1 Query: 575 DGYPKTEDE---LADEETLQRNLD-RAI--REEDYARAAKIRDDLHVLHEDTEASVLAAN 414 +G P +E + DE+ +R + RAI RE D AR +K+ + + T+A N Sbjct: 725 EGVPVAGEEFICVKDEKVARRIAEQRAIKQRERDLARESKVTLETFLARRKTDAETQTLN 784 Query: 413 TRFYNAFKN--GDFT-AMNSIWAKGDYVYVVHPGAGRISGYDVVLQS 282 + G T A+ + + V ++H GAG I+ D++L S Sbjct: 785 LVLKADVQGSVGAITDALRKMQTEKVKVDIIHSGAGAITESDILLAS 831
>RNPH_TROWT (Q83FT1) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA| nucleotidyltransferase) Length = 247 Score = 30.0 bits (66), Expect = 6.2 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 7/118 (5%) Frame = -1 Query: 566 PKTEDELADEETLQRNLDRAIREED--YARAAKIRDDLHVLHEDT---EASVLAANTRFY 402 P++ E +D E+++ + E R+ + D + L E+T + VL A+ Sbjct: 77 PRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENTIILDCDVLQADGGTR 136 Query: 401 NAFKNGDFTAMNS--IWAKGDYVYVVHPGAGRISGYDVVLQSWEMVCNADYEFPLNIE 234 A G + A+ +WAK + HP +S V L ++ + DY N + Sbjct: 137 TAAITGSYIALYDALVWAKNQKILSKHPLTDSVSAVSVGLVGDQIFLDLDYSEDSNAQ 194
>RNPH_TROW8 (Q83HF6) Ribonuclease PH (EC 2.7.7.56) (RNase PH) (tRNA| nucleotidyltransferase) Length = 247 Score = 30.0 bits (66), Expect = 6.2 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 7/118 (5%) Frame = -1 Query: 566 PKTEDELADEETLQRNLDRAIREED--YARAAKIRDDLHVLHEDT---EASVLAANTRFY 402 P++ E +D E+++ + E R+ + D + L E+T + VL A+ Sbjct: 77 PRSGTERSDRESVKGKISGRSHEISRLIGRSMRAILDRYALEENTIILDCDVLQADGGTR 136 Query: 401 NAFKNGDFTAMNS--IWAKGDYVYVVHPGAGRISGYDVVLQSWEMVCNADYEFPLNIE 234 A G + A+ +WAK + HP +S V L ++ + DY N + Sbjct: 137 TAAITGSYIALYDALVWAKNQKILSKHPLTDSVSAVSVGLVGDQIFLDLDYSEDSNAQ 194
>UVRC_MYCPA (Q741E5) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 647 Score = 30.0 bits (66), Expect = 6.2 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 3/102 (2%) Frame = -1 Query: 599 CHVKSGDADGYPKTEDELADEETLQRNLDRAIREEDYARAAKIRDDLHVLHE--DTEASV 426 C SG D + + L++ ++ A E D+ RAA++RDDL L + +A V Sbjct: 200 CDFLSGKTDRFARE---------LEQQMNAAAAELDFERAARLRDDLGALKRAMEKQAVV 250 Query: 425 LAANT-RFYNAFKNGDFTAMNSIWAKGDYVYVVHPGAGRISG 303 L T AF + + A V V H GR+ G Sbjct: 251 LGDGTDADVVAFADDELEAA---------VQVFHVRGGRVRG 283
>UVRC_COREF (Q8FT60) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 681 Score = 29.6 bits (65), Expect = 8.1 Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 3/121 (2%) Frame = -1 Query: 599 CHVKSGDADGYPKTEDELADEETLQRNLDRAIREEDYARAAKIRDDLHVLHE--DTEASV 426 C SG D K EL E + A E D+ RAA++RDDL +++ + +A V Sbjct: 200 CSFMSGHTD---KVTRELTAE------MMAASEELDFERAARLRDDLGAINKVMEKQAVV 250 Query: 425 LAANT-RFYNAFKNGDFTAMNSIWAKGDYVYVVHPGAGRISGYDVVLQSWEMVCNADYEF 249 L T AF + A V + H GRI G + W + D++ Sbjct: 251 LGDGTDADIIAFATDELEAA---------VQIFHVRGGRIRGQ----RGWVVEKTGDWDL 297 Query: 248 P 246 P Sbjct: 298 P 298
>GLND_ZYMMO (Q5NPH0) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 926 Score = 29.6 bits (65), Expect = 8.1 Identities = 18/60 (30%), Positives = 29/60 (48%) Frame = -1 Query: 548 LADEETLQRNLDRAIREEDYARAAKIRDDLHVLHEDTEASVLAANTRFYNAFKNGDFTAM 369 L QR+L A D+A A K + L +L+ T A + A +N++KN T++ Sbjct: 586 LMSHTAFQRDLADAKTITDFANAVKSPERLRLLYLLTVADISAVGPHIWNSWKNQLLTSL 645
>VE2_HPV09 (P36780) Regulatory protein E2| Length = 461 Score = 29.6 bits (65), Expect = 8.1 Identities = 14/52 (26%), Positives = 29/52 (55%) Frame = -2 Query: 640 GFKLQPPTSTDPEFAMLKVGMLMAIQKLKTS*LTKKPFSVIWTGLSGKKIMP 485 G++ PP +T + A +GM++ +Q L+ S ++P+++ T L + P Sbjct: 55 GYQPVPPLATSEQKAKDAIGMVLLLQSLQRSAYGQEPWTLAQTSLEAVRSPP 106 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,534,961 Number of Sequences: 219361 Number of extensions: 2356042 Number of successful extensions: 6901 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 6623 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6896 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
